Ggra1800.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1800.t1
Unique Name	Ggra1800.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	123

Homology

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BLAST of Ggra1800.t1 vs. uniprot
Match: A0A2V3IWJ9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWJ9_9FLOR)

HSP 1 Score: 195 bits (495), Expect = 2.080e-62
Identity = 93/119 (78.15%), Postives = 106/119 (89.08%), Query Frame = 0

Query:    1 MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQLTKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKLNQAVELPNVPKALDVVKSE 119
            MPPRIWMPNFPLVLRLK P R +P V+MPP G+EGTF T+E++LETV QLTKPEM RFL  VYGLDVKRINS+NVMG+RRN+ S+MPRRDKDFKRFYVKLNQ VELPN+PK+LD+VK E
Sbjct:    1 MPPRIWMPNFPLVLRLKAPPRVHPPVQMPPPGMEGTFHTSEIVLETVQQLTKPEMKRFLTAVYGLDVKRINSLNVMGNRRNESSQMPRRDKDFKRFYVKLNQPVELPNIPKSLDIVKRE 119

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BLAST of Ggra1800.t1 vs. uniprot
Match: R7QKX0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKX0_CHOCR)

HSP 1 Score: 146 bits (368), Expect = 4.490e-43
Identity = 71/114 (62.28%), Postives = 89/114 (78.07%), Query Frame = 0

Query:    1 MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQLTKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKLNQAVELPNVPKALD 114
            MPPRIWMPNFPL L+LK P + +  VKMP  G EGTFKT EL+ ETVPQ+TK E+ +FL+  YG+DV  ++S+ VMG R+N+ ++MP ++KDFKRFYVKL   VELPNVPK LD
Sbjct:    1 MPPRIWMPNFPLRLKLKAPPQAH--VKMPQPGTEGTFKTKELVFETVPQMTKLEIKQFLRAAYGIDVNNVHSLVVMGKRKNEHTRMPVQEKDFKRFYVKLKSDVELPNVPKPLD 112

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BLAST of Ggra1800.t1 vs. uniprot
Match: A0A1X6NQM5 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQM5_PORUM)

HSP 1 Score: 110 bits (276), Expect = 8.130e-29
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0

Query:    1 MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQLTKPEMSRFLKTVYGLDVKRINSVNVMGHRRN------DLSKMPRRDKDFKRFYVKLNQAVELPNVPK 111
            MPPRIWMPN  + L+L+       RV MP  G+EGTFKT  LI+ET PQ+TK E    L +VYG+DV +++S+N+MG R+       D     ++DKD KRFYVKL   VE+P  PK
Sbjct:    1 MPPRIWMPNVRMRLKLRPAPSESGRVAMPETGVEGTFKTNTLIVETPPQVTKVEARLMLSSVYGMDVDKLSSLNIMGGRQRIAFKPGDSRGAVKKDKDMKRFYVKLTSPVEVPTAPK 117

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BLAST of Ggra1800.t1 vs. uniprot
Match: A0A7J7IJ64 (54S ribosomal protein L23, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJ64_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 2.850e-18
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 0

Query:    1 MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQLTKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKLNQAVELPNVPK 111
            MPPR + PN  L LR +   R+   ++  P  +  TF+T  + L T+P +T+ E+ + L+ +YG+ V+R+N++NV G +R  L +  +RD D+K  YVKL + VELP  P+
Sbjct:    1 MPPRFYFPNLNLRLRFEPALRS--ELRELPRSVAETFRTRFVKLRTIPSMTRIEIKQILEKLYGVQVERVNTLNVYGKKRRYLGRYEKRDHDYKTAYVKLAEEVELPRDPR 109

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BLAST of Ggra1800.t1 vs. uniprot
Match: A0A5J4Z739 (50S ribosomal protein L23 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z739_PORPP)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-8
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 0

Query:    8 PNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQLTKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKLNQAVELPNVPK 111
            PN   + RL+ P   +P   +P D    TF T  LI E   +LTK E+  +L+ +Y LD+ ++N++   G       K   R+KD K+ YV L +AV LP+ P+
Sbjct:    3 PNLKCIFRLQPPPGIHPGSLLPND----TFVTDTLIFEVDRRLTKVEVKLYLEAMYNLDIVKVNTLVQYGKLSKRHGKW-HREKDVKKAYVFLREAVTLPSRPR 101

The following BLAST results are available for this feature:

BLAST of Ggra1800.t1 vs. uniprot

BLAST of Ggra1800.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A2V3IWJ9	2.080e-62	78.15	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QKX0	4.490e-43	62.28	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A1X6NQM5	8.130e-29	49.57	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]
A0A7J7IJ64	2.850e-18	38.74	54S ribosomal protein L23, mitochondrial n=1 Tax=C...	[more]
A0A5J4Z739	2.320e-8	35.58	50S ribosomal protein L23 n=1 Tax=Porphyridium pur...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 41..102 e-value: 9.7E-9 score: 35.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..121 e-value: 2.4E-13 score: 52.5
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 43..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:658824..659273 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1800.t1	Ggra1800.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000050_pilon 658824..659273 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1800.t1 ID=Ggra1800.t1|Name=Ggra1800.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=123bp
MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQL
TKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKL
NQAVELPNVPKALDVVKSEVEL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013025	Ribosomal_L25/23
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf