Ggra1800.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1800.t1
Unique NameGgra1800.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:658824..659273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN112CT
PFAMsRibosomal_L23
Max annot lvl2759|Eukaryota
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue2.96e-18
EggNOG OGsKOG4089@1|root,KOG4089@2759|Eukaryota
Descriptionmitochondrial translation
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1800Ggra1800Gracilaria gracilis GNS1m malegenetig00000050_pilon 658824..659273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1800.t1Ggra1800.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 658824..659273 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1800.t1.start1Ggra1800.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 658824..658826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1800.t1.CDS1Ggra1800.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 658824..658913 +
Ggra1800.t1.CDS2Ggra1800.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 658995..659273 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1800.t1.exon1Ggra1800.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 658824..658913 +
Ggra1800.t1.exon2Ggra1800.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 658995..659273 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1800.t1.intron1Ggra1800.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 658914..658994 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1800.t1.stop1Ggra1800.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 659271..659273 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1800.t1 ID=Ggra1800.t1|Name=Ggra1800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=123bp
MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQL
TKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKL
NQAVELPNVPKALDVVKSEVEL*
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spliced messenger RNA

>Ggra1800.t1 ID=Ggra1800.t1|Name=Ggra1800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp|location=Sequence derived from alignment at tig00000050_pilon:658824..659273+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCAAGAATCTGGATGCCAAACTTTCCGCTTGTTCTGCGGCTAAA
AGTTCCCTCGCGCACGTACCCTCGCGTGAAGATGCCTCCAGATGGTATTG
AGGGAACCTTCAAGACAACTGAGCTCATACTAGAAACAGTTCCGCAGCTC
ACGAAACCTGAAATGTCGCGATTCTTAAAGACTGTATACGGGCTTGATGT
GAAGCGCATTAATTCGGTGAACGTCATGGGACATAGGAGAAATGATCTTA
GTAAAATGCCACGCCGGGACAAGGATTTCAAGCGTTTCTACGTCAAATTG
AATCAGGCCGTTGAACTACCAAATGTGCCTAAAGCCCTTGATGTTGTCAA
GAGTGAAGTAGAACTATGA
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protein sequence of Ggra1800.t1

>Ggra1800.t1 ID=Ggra1800.t1|Name=Ggra1800.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=123bp
MPPRIWMPNFPLVLRLKVPSRTYPRVKMPPDGIEGTFKTTELILETVPQL
TKPEMSRFLKTVYGLDVKRINSVNVMGHRRNDLSKMPRRDKDFKRFYVKL
NQAVELPNVPKALDVVKSEVEL*
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mRNA from alignment at tig00000050_pilon:658824..659273+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1800.t1 ID=Ggra1800.t1|Name=Ggra1800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000050_pilon:658824..659273+ (Gracilaria gracilis GNS1m male)
ATGCCACCAAGAATCTGGATGCCAAACTTTCCGCTTGTTCTGCGGCTAAA
AGTTCCCTCGCGCACGTACCCTCGCGTGAAGATGCCTCCAGTAAGTGTCA
ATTCTTTCATGCAGCAAAAGAACGATGTAGAACCATCATAGTTGATCATG
CTAACCGACTCGTCTTTCTAGGATGGTATTGAGGGAACCTTCAAGACAAC
TGAGCTCATACTAGAAACAGTTCCGCAGCTCACGAAACCTGAAATGTCGC
GATTCTTAAAGACTGTATACGGGCTTGATGTGAAGCGCATTAATTCGGTG
AACGTCATGGGACATAGGAGAAATGATCTTAGTAAAATGCCACGCCGGGA
CAAGGATTTCAAGCGTTTCTACGTCAAATTGAATCAGGCCGTTGAACTAC
CAAATGTGCCTAAAGCCCTTGATGTTGTCAAGAGTGAAGTAGAACTATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:658824..659273+

>Ggra1800.t1 ID=Ggra1800.t1|Name=Ggra1800.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=369bp|location=Sequence derived from alignment at tig00000050_pilon:658824..659273+ (Gracilaria gracilis GNS1m male)
ATGCCACCAAGAATCTGGATGCCAAACTTTCCGCTTGTTCTGCGGCTAAA
AGTTCCCTCGCGCACGTACCCTCGCGTGAAGATGCCTCCAGATGGTATTG
AGGGAACCTTCAAGACAACTGAGCTCATACTAGAAACAGTTCCGCAGCTC
ACGAAACCTGAAATGTCGCGATTCTTAAAGACTGTATACGGGCTTGATGT
GAAGCGCATTAATTCGGTGAACGTCATGGGACATAGGAGAAATGATCTTA
GTAAAATGCCACGCCGGGACAAGGATTTCAAGCGTTTCTACGTCAAATTG
AATCAGGCCGTTGAACTACCAAATGTGCCTAAAGCCCTTGATGTTGTCAA
GAGTGAAGTAGAACTATGA
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