Ggra1853.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1853.t1
Unique NameGgra1853.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:946626..948381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1853Ggra1853Gracilaria gracilis GNS1m malegenetig00000050_pilon 946626..948381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1853.t1Ggra1853.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 946626..948381 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1853.t1.start1Ggra1853.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 946626..946628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1853.t1.CDS1Ggra1853.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 946626..947469 +
Ggra1853.t1.CDS2Ggra1853.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 947552..947638 +
Ggra1853.t1.CDS3Ggra1853.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 947780..948381 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1853.t1.exon1Ggra1853.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 946626..947469 +
Ggra1853.t1.exon2Ggra1853.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 947552..947638 +
Ggra1853.t1.exon3Ggra1853.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 947780..948381 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1853.t1.intron1Ggra1853.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 947470..947551 +
Ggra1853.t1.intron2Ggra1853.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 947639..947779 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1853.t1.stop1Ggra1853.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 948379..948381 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1853.t1 ID=Ggra1853.t1|Name=Ggra1853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MAHSPLRPESDRRSHQPLVVESTTVSEGGRFKHDSAPPAAPMGKRASAEA
RRRAKHDRDVKKEPNMLPVRPDAPNGIASAAPLPVPANAVHAPRAENGVT
RATSPKKVLDRKRGRDDDGHCDSALATSSLSLNELDDYRNECIKLEKLRH
ARVYEADKRRLYHENVILTMYQMEVDAILDEFEQGKRAAMLKMLSDNAEK
IRQVEELRCGICKDDMVGGWQRKHEMALRGRGVVDEEVDDGRPARRKRTR
SNSVKVNVELDDHQVSDDLAEMRGEKRQREEVMYSCLLPTAVLHASQFAA
RTPHEGGTEKGLLASLASASAAINAVADCNAVNSWVALLSRLAILDSRAN
GISPRRGRGNGDGVRGVVCDSKLSAVRNTPRGMGCWSHASDDDTLSRDEV
GDGDEDRENERVDGVCGGETVCGECGCGRAGGRLGGREGEGEREAAELDE
EMDGMMTGEEGGVVDGDEGALGDGDEGAFDDEDEGALGMLAKMWPARGLR
RRQLQQSDSV*
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spliced messenger RNA

>Ggra1853.t1 ID=Ggra1853.t1|Name=Ggra1853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000050_pilon:946626..948381+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACAGTCCGCTTCGCCCCGAGTCCGACCGCCGTTCGCACCAGCC
GCTCGTCGTCGAGAGCACCACCGTCTCCGAAGGCGGCCGCTTCAAGCACG
ACAGCGCACCGCCTGCTGCACCCATGGGAAAGAGGGCGTCTGCCGAGGCG
CGGCGACGCGCCAAGCACGACAGGGACGTCAAGAAGGAGCCTAACATGCT
TCCCGTGCGTCCGGACGCGCCGAACGGCATCGCTTCTGCTGCGCCGCTGC
CGGTGCCCGCGAATGCCGTGCATGCGCCGCGCGCGGAGAATGGCGTCACG
CGCGCTACGTCGCCGAAGAAGGTGCTGGATAGAAAGCGCGGTAGGGACGA
TGACGGGCATTGTGATAGTGCGCTGGCCACCAGTTCGCTTTCGTTGAATG
AGCTGGATGACTACCGGAACGAGTGCATCAAGTTGGAAAAGCTGCGACAT
GCCAGAGTGTACGAGGCCGACAAGCGACGTTTGTACCACGAGAACGTGAT
TTTGACAATGTACCAAATGGAAGTGGATGCCATCCTGGATGAATTCGAGC
AGGGCAAGCGCGCCGCTATGCTCAAAATGCTGTCGGATAACGCAGAGAAG
ATACGTCAAGTGGAAGAACTTCGCTGCGGAATCTGCAAGGATGACATGGT
TGGTGGCTGGCAACGGAAGCACGAGATGGCTCTGAGAGGGCGCGGCGTCG
TTGACGAAGAAGTAGACGATGGCCGACCTGCACGCCGCAAACGAACGAGG
TCCAACAGCGTCAAGGTCAACGTTGAGCTGGATGACCATCAAGTCAGCGA
CGATCTAGCAGAGATGAGGGGTGAAAAACGACAACGGGAAGAAGTTATGT
ACAGTTGCTTGCTCCCCACCGCCGTTCTCCATGCGTCACAATTCGCAGCT
CGCACTCCGCATGAAGGCGGCACCGAAAAGGGGCTCTTGGCAAGTCTGGC
GTCGGCATCTGCCGCCATCAACGCCGTCGCCGATTGCAACGCAGTCAACT
CATGGGTCGCCTTATTGAGCCGACTGGCGATATTAGACAGCCGCGCTAAC
GGGATATCGCCGCGTCGCGGACGCGGTAACGGCGACGGCGTAAGAGGCGT
GGTCTGCGATAGCAAGCTATCCGCGGTAAGAAACACGCCTCGCGGAATGG
GCTGTTGGTCACACGCGTCCGACGACGACACACTCAGCCGCGACGAAGTG
GGAGACGGCGACGAAGACCGTGAAAACGAGCGAGTGGACGGCGTCTGCGG
CGGCGAAACGGTCTGCGGCGAGTGCGGCTGCGGGCGTGCGGGTGGGCGCT
TGGGCGGACGAGAGGGAGAAGGTGAACGAGAAGCGGCTGAGCTGGACGAG
GAGATGGATGGAATGATGACGGGCGAGGAAGGCGGGGTTGTTGACGGAGA
TGAGGGCGCGCTTGGTGACGGAGATGAGGGCGCGTTTGATGACGAAGATG
AGGGCGCGCTTGGCATGTTGGCGAAGATGTGGCCCGCGAGAGGACTGCGC
AGGCGGCAACTTCAGCAGAGCGATTCGGTGTGA
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protein sequence of Ggra1853.t1

>Ggra1853.t1 ID=Ggra1853.t1|Name=Ggra1853.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MAHSPLRPESDRRSHQPLVVESTTVSEGGRFKHDSAPPAAPMGKRASAEA
RRRAKHDRDVKKEPNMLPVRPDAPNGIASAAPLPVPANAVHAPRAENGVT
RATSPKKVLDRKRGRDDDGHCDSALATSSLSLNELDDYRNECIKLEKLRH
ARVYEADKRRLYHENVILTMYQMEVDAILDEFEQGKRAAMLKMLSDNAEK
IRQVEELRCGICKDDMVGGWQRKHEMALRGRGVVDEEVDDGRPARRKRTR
SNSVKVNVELDDHQVSDDLAEMRGEKRQREEVMYSCLLPTAVLHASQFAA
RTPHEGGTEKGLLASLASASAAINAVADCNAVNSWVALLSRLAILDSRAN
GISPRRGRGNGDGVRGVVCDSKLSAVRNTPRGMGCWSHASDDDTLSRDEV
GDGDEDRENERVDGVCGGETVCGECGCGRAGGRLGGREGEGEREAAELDE
EMDGMMTGEEGGVVDGDEGALGDGDEGAFDDEDEGALGMLAKMWPARGLR
RRQLQQSDSV*
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mRNA from alignment at tig00000050_pilon:946626..948381+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1853.t1 ID=Ggra1853.t1|Name=Ggra1853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1756bp|location=Sequence derived from alignment at tig00000050_pilon:946626..948381+ (Gracilaria gracilis GNS1m male)
ATGGCGCACAGTCCGCTTCGCCCCGAGTCCGACCGCCGTTCGCACCAGCC
GCTCGTCGTCGAGAGCACCACCGTCTCCGAAGGCGGCCGCTTCAAGCACG
ACAGCGCACCGCCTGCTGCACCCATGGGAAAGAGGGCGTCTGCCGAGGCG
CGGCGACGCGCCAAGCACGACAGGGACGTCAAGAAGGAGCCTAACATGCT
TCCCGTGCGTCCGGACGCGCCGAACGGCATCGCTTCTGCTGCGCCGCTGC
CGGTGCCCGCGAATGCCGTGCATGCGCCGCGCGCGGAGAATGGCGTCACG
CGCGCTACGTCGCCGAAGAAGGTGCTGGATAGAAAGCGCGGTAGGGACGA
TGACGGGCATTGTGATAGTGCGCTGGCCACCAGTTCGCTTTCGTTGAATG
AGCTGGATGACTACCGGAACGAGTGCATCAAGTTGGAAAAGCTGCGACAT
GCCAGAGTGTACGAGGCCGACAAGCGACGTTTGTACCACGAGAACGTGAT
TTTGACAATGTACCAAATGGAAGTGGATGCCATCCTGGATGAATTCGAGC
AGGGCAAGCGCGCCGCTATGCTCAAAATGCTGTCGGATAACGCAGAGAAG
ATACGTCAAGTGGAAGAACTTCGCTGCGGAATCTGCAAGGATGACATGGT
TGGTGGCTGGCAACGGAAGCACGAGATGGCTCTGAGAGGGCGCGGCGTCG
TTGACGAAGAAGTAGACGATGGCCGACCTGCACGCCGCAAACGAACGAGG
TCCAACAGCGTCAAGGTCAACGTTGAGCTGGATGACCATCAAGTCAGCGA
CGATCTAGCAGAGATGAGGGGTGAAAAACGACAACGGGAAGAAGGTAATG
AGCGCGAGCGACGTTCTAAGAAACGAAAGTGAGTGCCATTTACATTGCCT
AACGTTTGTTTTACACGTGATAAAAGTTATGTACAGTTGCTTGCTCCCCA
CCGCCGTTCTCCATGCGTCACAATTCGCAGCTCGCACTCCGCATGAAGGC
GGCACCGAAAAGGGTCAAGATTCATTCTTGTGAGCTTGTTGTGCGTGTGC
GATGGATTCGTCCCTCAATTCATGCGCCCTTCTCAAGCACAGTCTGGACA
CATGATCCAGCGTAATGCGTAATCGGCATAATGAAGCCATATCCTTCTTG
GAAGGGCTCTTGGCAAGTCTGGCGTCGGCATCTGCCGCCATCAACGCCGT
CGCCGATTGCAACGCAGTCAACTCATGGGTCGCCTTATTGAGCCGACTGG
CGATATTAGACAGCCGCGCTAACGGGATATCGCCGCGTCGCGGACGCGGT
AACGGCGACGGCGTAAGAGGCGTGGTCTGCGATAGCAAGCTATCCGCGGT
AAGAAACACGCCTCGCGGAATGGGCTGTTGGTCACACGCGTCCGACGACG
ACACACTCAGCCGCGACGAAGTGGGAGACGGCGACGAAGACCGTGAAAAC
GAGCGAGTGGACGGCGTCTGCGGCGGCGAAACGGTCTGCGGCGAGTGCGG
CTGCGGGCGTGCGGGTGGGCGCTTGGGCGGACGAGAGGGAGAAGGTGAAC
GAGAAGCGGCTGAGCTGGACGAGGAGATGGATGGAATGATGACGGGCGAG
GAAGGCGGGGTTGTTGACGGAGATGAGGGCGCGCTTGGTGACGGAGATGA
GGGCGCGTTTGATGACGAAGATGAGGGCGCGCTTGGCATGTTGGCGAAGA
TGTGGCCCGCGAGAGGACTGCGCAGGCGGCAACTTCAGCAGAGCGATTCG
GTGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:946626..948381+

>Ggra1853.t1 ID=Ggra1853.t1|Name=Ggra1853.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000050_pilon:946626..948381+ (Gracilaria gracilis GNS1m male)
ATGGCGCACAGTCCGCTTCGCCCCGAGTCCGACCGCCGTTCGCACCAGCC
GCTCGTCGTCGAGAGCACCACCGTCTCCGAAGGCGGCCGCTTCAAGCACG
ACAGCGCACCGCCTGCTGCACCCATGGGAAAGAGGGCGTCTGCCGAGGCG
CGGCGACGCGCCAAGCACGACAGGGACGTCAAGAAGGAGCCTAACATGCT
TCCCGTGCGTCCGGACGCGCCGAACGGCATCGCTTCTGCTGCGCCGCTGC
CGGTGCCCGCGAATGCCGTGCATGCGCCGCGCGCGGAGAATGGCGTCACG
CGCGCTACGTCGCCGAAGAAGGTGCTGGATAGAAAGCGCGGTAGGGACGA
TGACGGGCATTGTGATAGTGCGCTGGCCACCAGTTCGCTTTCGTTGAATG
AGCTGGATGACTACCGGAACGAGTGCATCAAGTTGGAAAAGCTGCGACAT
GCCAGAGTGTACGAGGCCGACAAGCGACGTTTGTACCACGAGAACGTGAT
TTTGACAATGTACCAAATGGAAGTGGATGCCATCCTGGATGAATTCGAGC
AGGGCAAGCGCGCCGCTATGCTCAAAATGCTGTCGGATAACGCAGAGAAG
ATACGTCAAGTGGAAGAACTTCGCTGCGGAATCTGCAAGGATGACATGGT
TGGTGGCTGGCAACGGAAGCACGAGATGGCTCTGAGAGGGCGCGGCGTCG
TTGACGAAGAAGTAGACGATGGCCGACCTGCACGCCGCAAACGAACGAGG
TCCAACAGCGTCAAGGTCAACGTTGAGCTGGATGACCATCAAGTCAGCGA
CGATCTAGCAGAGATGAGGGGTGAAAAACGACAACGGGAAGAAGTTATGT
ACAGTTGCTTGCTCCCCACCGCCGTTCTCCATGCGTCACAATTCGCAGCT
CGCACTCCGCATGAAGGCGGCACCGAAAAGGGGCTCTTGGCAAGTCTGGC
GTCGGCATCTGCCGCCATCAACGCCGTCGCCGATTGCAACGCAGTCAACT
CATGGGTCGCCTTATTGAGCCGACTGGCGATATTAGACAGCCGCGCTAAC
GGGATATCGCCGCGTCGCGGACGCGGTAACGGCGACGGCGTAAGAGGCGT
GGTCTGCGATAGCAAGCTATCCGCGGTAAGAAACACGCCTCGCGGAATGG
GCTGTTGGTCACACGCGTCCGACGACGACACACTCAGCCGCGACGAAGTG
GGAGACGGCGACGAAGACCGTGAAAACGAGCGAGTGGACGGCGTCTGCGG
CGGCGAAACGGTCTGCGGCGAGTGCGGCTGCGGGCGTGCGGGTGGGCGCT
TGGGCGGACGAGAGGGAGAAGGTGAACGAGAAGCGGCTGAGCTGGACGAG
GAGATGGATGGAATGATGACGGGCGAGGAAGGCGGGGTTGTTGACGGAGA
TGAGGGCGCGCTTGGTGACGGAGATGAGGGCGCGTTTGATGACGAAGATG
AGGGCGCGCTTGGCATGTTGGCGAAGATGTGGCCCGCGAGAGGACTGCGC
AGGCGGCAACTTCAGCAGAGCGATTCGGTGTGA
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