Ggra1799.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1799.t1
Unique Name	Ggra1799.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:656012..657739 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703131.1
PFAMs	p450
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07427,ko:K07428,ko:K12795
KEGG Pathway	ko04621,ko04626,ko04726,map04621,map04626,map04726
Evalue	8.79e-105
EggNOG OGs	COG2124@1\|root,KOG0157@2759\|Eukaryota
EC	1.14.14.1
Description	iron ion binding
COG category	Q
BRITE	ko00000,ko00001,ko00199,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1799	Ggra1799	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 656012..657739 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1799.t1.start1	Ggra1799.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 656012..656014 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1799.t1.CDS1	Ggra1799.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 656012..657739 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1799.t1.exon1	Ggra1799.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 656012..657739 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1799.t1.stop1	Ggra1799.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 657737..657739 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1799.t1	Ggra1799.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 656012..657739 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:656012..657739+
coding sequence from alignment at tig00000050_pilon:656012..657739+

mRNA sequence

>Ggra1799.t1 ID=Ggra1799.t1|Name=Ggra1799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp
MARNTCGESSWYTSTSDLLSSISEGITPTLHYLQRTVEYVIPPLNPPAPT
PPSPSNITVVIGIAAASAVGAGVYSCAKLYRRRRLYSHFETKQSAPGPTP
LPIVGNVLQLRSQYYETLYRYVDHPISIFWVMNDPFIVVNEEQALRRVLG
GANGLYTKPRYFGYRSKAVSKAVQFEKNLVARESIQYEPNGDVSRAALEA
MIVSSFGTIKTSMVDLLHQLELASFDESGALPTVEGDTVRPVRRSIVGLN
LNLLFGVTGDRGHEIDHHHVSETISSAGNEFARRMVNPFKVLVDLPSNLK
FMWDVGSLISLGRRLCGILDDTVKSSMDCPLGLDNTAKPSIDCPSQQRCK
MNASGASWVHAWIGKVGTIGKLGKVVGLLMASTQTVPLAAVWMLHLVAND
EKVKTMLRKELKDLGVHTIRDLGYEHLDKMKMADAVVKETLRLYPPFPLI
QRQARLDDVLADISVSSGSIVYVVPWLVHRNPKYWANAHEFKPERFLEGS
SSHGDAPSDWLYLPFGRGSRMCAGSKLALTELKILLCHTICSYEWESRRE
IILRDSRFPELGMNPKGIRMSFRRR*

spliced messenger RNA

>Ggra1799.t1 ID=Ggra1799.t1|Name=Ggra1799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000050_pilon:656012..657739+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCAACACATGTGGCGAATCATCGTGGTATACATCAACCTCCGA
TCTTCTGTCTTCAATATCCGAAGGAATCACCCCGACTCTACACTACCTGC
AACGTACCGTTGAATATGTCATTCCACCCCTCAACCCCCCCGCCCCAACA
CCGCCGTCCCCTTCGAATATAACGGTAGTAATCGGTATTGCCGCAGCATC
AGCTGTAGGCGCTGGTGTATACTCCTGTGCGAAGCTCTATCGAAGAAGAC
GTCTTTACTCACATTTTGAAACCAAGCAATCAGCACCGGGACCCACTCCG
CTGCCCATTGTGGGAAATGTTTTGCAACTACGATCCCAGTACTACGAAAC
CTTGTATCGTTATGTCGACCACCCAATCAGTATATTTTGGGTCATGAATG
ATCCCTTCATCGTCGTCAACGAAGAACAAGCCTTACGACGTGTGTTGGGA
GGCGCCAATGGTCTTTATACAAAACCCAGGTATTTTGGATACCGCTCCAA
AGCAGTCAGTAAAGCTGTACAGTTTGAAAAGAATCTGGTGGCGAGGGAAT
CCATTCAGTATGAACCGAATGGCGATGTTTCTCGAGCTGCCTTGGAAGCC
ATGATTGTCTCGTCGTTTGGTACTATCAAAACCTCCATGGTTGATCTCTT
GCATCAACTCGAGCTTGCTTCATTTGACGAATCTGGTGCCTTACCCACTG
TCGAGGGTGACACTGTCCGCCCCGTTCGTCGCTCTATTGTTGGACTCAAT
TTGAATCTCTTGTTCGGCGTTACCGGAGACCGCGGACATGAAATCGATCA
TCACCATGTTTCAGAAACCATTTCGTCCGCTGGAAACGAATTTGCGAGGC
GAATGGTCAACCCCTTCAAAGTGCTTGTCGACCTACCGAGCAATCTCAAG
TTCATGTGGGATGTAGGTAGTCTGATATCTCTCGGTAGAAGATTATGTGG
TATCTTGGACGATACCGTCAAGTCTTCCATGGACTGCCCATTAGGGTTGG
ACAATACTGCCAAGCCTTCCATTGACTGCCCATCACAGCAGCGTTGCAAA
ATGAATGCTTCTGGAGCAAGCTGGGTACATGCGTGGATCGGAAAGGTAGG
AACTATTGGCAAGCTTGGGAAAGTCGTTGGTTTGCTGATGGCTTCAACAC
AGACCGTACCCCTCGCTGCTGTGTGGATGCTTCATCTAGTGGCAAATGAT
GAGAAGGTGAAGACGATGTTGAGAAAGGAGCTGAAGGATCTTGGCGTTCA
TACTATCAGGGACTTGGGATACGAACATCTTGACAAAATGAAGATGGCGG
ATGCGGTGGTCAAGGAAACGCTACGCTTATATCCGCCGTTCCCTCTCATT
CAGAGGCAGGCGCGTCTCGACGACGTGCTCGCCGATATCAGCGTTTCATC
CGGTTCTATTGTCTATGTCGTACCATGGCTCGTTCATAGGAATCCAAAGT
ACTGGGCGAATGCTCACGAGTTCAAACCTGAAAGGTTTCTGGAGGGAAGC
AGTTCGCATGGAGATGCACCAAGCGATTGGTTATATCTTCCATTTGGTCG
AGGGTCAAGAATGTGCGCTGGTTCTAAACTTGCGCTTACAGAACTCAAGA
TCCTTCTTTGCCACACCATTTGCTCGTATGAATGGGAAAGTAGACGAGAA
ATTATTCTTCGAGATAGCAGGTTCCCAGAGTTGGGCATGAACCCGAAGGG
AATACGAATGTCGTTCCGAAGGAGGTGA

protein sequence of Ggra1799.t1

>Ggra1799.t1 ID=Ggra1799.t1|Name=Ggra1799.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=576bp
MARNTCGESSWYTSTSDLLSSISEGITPTLHYLQRTVEYVIPPLNPPAPT
PPSPSNITVVIGIAAASAVGAGVYSCAKLYRRRRLYSHFETKQSAPGPTP
LPIVGNVLQLRSQYYETLYRYVDHPISIFWVMNDPFIVVNEEQALRRVLG
GANGLYTKPRYFGYRSKAVSKAVQFEKNLVARESIQYEPNGDVSRAALEA
MIVSSFGTIKTSMVDLLHQLELASFDESGALPTVEGDTVRPVRRSIVGLN
LNLLFGVTGDRGHEIDHHHVSETISSAGNEFARRMVNPFKVLVDLPSNLK
FMWDVGSLISLGRRLCGILDDTVKSSMDCPLGLDNTAKPSIDCPSQQRCK
MNASGASWVHAWIGKVGTIGKLGKVVGLLMASTQTVPLAAVWMLHLVAND
EKVKTMLRKELKDLGVHTIRDLGYEHLDKMKMADAVVKETLRLYPPFPLI
QRQARLDDVLADISVSSGSIVYVVPWLVHRNPKYWANAHEFKPERFLEGS
SSHGDAPSDWLYLPFGRGSRMCAGSKLALTELKILLCHTICSYEWESRRE
IILRDSRFPELGMNPKGIRMSFRRR*

mRNA from alignment at tig00000050_pilon:656012..657739+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1799.t1 ID=Ggra1799.t1|Name=Ggra1799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000050_pilon:656012..657739+ (Gracilaria gracilis GNS1m male)
ATGGCACGCAACACATGTGGCGAATCATCGTGGTATACATCAACCTCCGA
TCTTCTGTCTTCAATATCCGAAGGAATCACCCCGACTCTACACTACCTGC
AACGTACCGTTGAATATGTCATTCCACCCCTCAACCCCCCCGCCCCAACA
CCGCCGTCCCCTTCGAATATAACGGTAGTAATCGGTATTGCCGCAGCATC
AGCTGTAGGCGCTGGTGTATACTCCTGTGCGAAGCTCTATCGAAGAAGAC
GTCTTTACTCACATTTTGAAACCAAGCAATCAGCACCGGGACCCACTCCG
CTGCCCATTGTGGGAAATGTTTTGCAACTACGATCCCAGTACTACGAAAC
CTTGTATCGTTATGTCGACCACCCAATCAGTATATTTTGGGTCATGAATG
ATCCCTTCATCGTCGTCAACGAAGAACAAGCCTTACGACGTGTGTTGGGA
GGCGCCAATGGTCTTTATACAAAACCCAGGTATTTTGGATACCGCTCCAA
AGCAGTCAGTAAAGCTGTACAGTTTGAAAAGAATCTGGTGGCGAGGGAAT
CCATTCAGTATGAACCGAATGGCGATGTTTCTCGAGCTGCCTTGGAAGCC
ATGATTGTCTCGTCGTTTGGTACTATCAAAACCTCCATGGTTGATCTCTT
GCATCAACTCGAGCTTGCTTCATTTGACGAATCTGGTGCCTTACCCACTG
TCGAGGGTGACACTGTCCGCCCCGTTCGTCGCTCTATTGTTGGACTCAAT
TTGAATCTCTTGTTCGGCGTTACCGGAGACCGCGGACATGAAATCGATCA
TCACCATGTTTCAGAAACCATTTCGTCCGCTGGAAACGAATTTGCGAGGC
GAATGGTCAACCCCTTCAAAGTGCTTGTCGACCTACCGAGCAATCTCAAG
TTCATGTGGGATGTAGGTAGTCTGATATCTCTCGGTAGAAGATTATGTGG
TATCTTGGACGATACCGTCAAGTCTTCCATGGACTGCCCATTAGGGTTGG
ACAATACTGCCAAGCCTTCCATTGACTGCCCATCACAGCAGCGTTGCAAA
ATGAATGCTTCTGGAGCAAGCTGGGTACATGCGTGGATCGGAAAGGTAGG
AACTATTGGCAAGCTTGGGAAAGTCGTTGGTTTGCTGATGGCTTCAACAC
AGACCGTACCCCTCGCTGCTGTGTGGATGCTTCATCTAGTGGCAAATGAT
GAGAAGGTGAAGACGATGTTGAGAAAGGAGCTGAAGGATCTTGGCGTTCA
TACTATCAGGGACTTGGGATACGAACATCTTGACAAAATGAAGATGGCGG
ATGCGGTGGTCAAGGAAACGCTACGCTTATATCCGCCGTTCCCTCTCATT
CAGAGGCAGGCGCGTCTCGACGACGTGCTCGCCGATATCAGCGTTTCATC
CGGTTCTATTGTCTATGTCGTACCATGGCTCGTTCATAGGAATCCAAAGT
ACTGGGCGAATGCTCACGAGTTCAAACCTGAAAGGTTTCTGGAGGGAAGC
AGTTCGCATGGAGATGCACCAAGCGATTGGTTATATCTTCCATTTGGTCG
AGGGTCAAGAATGTGCGCTGGTTCTAAACTTGCGCTTACAGAACTCAAGA
TCCTTCTTTGCCACACCATTTGCTCGTATGAATGGGAAAGTAGACGAGAA
ATTATTCTTCGAGATAGCAGGTTCCCAGAGTTGGGCATGAACCCGAAGGG
AATACGAATGTCGTTCCGAAGGAGGTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:656012..657739+

>Ggra1799.t1 ID=Ggra1799.t1|Name=Ggra1799.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1728bp|location=Sequence derived from alignment at tig00000050_pilon:656012..657739+ (Gracilaria gracilis GNS1m male)
ATGGCACGCAACACATGTGGCGAATCATCGTGGTATACATCAACCTCCGA
TCTTCTGTCTTCAATATCCGAAGGAATCACCCCGACTCTACACTACCTGC
AACGTACCGTTGAATATGTCATTCCACCCCTCAACCCCCCCGCCCCAACA
CCGCCGTCCCCTTCGAATATAACGGTAGTAATCGGTATTGCCGCAGCATC
AGCTGTAGGCGCTGGTGTATACTCCTGTGCGAAGCTCTATCGAAGAAGAC
GTCTTTACTCACATTTTGAAACCAAGCAATCAGCACCGGGACCCACTCCG
CTGCCCATTGTGGGAAATGTTTTGCAACTACGATCCCAGTACTACGAAAC
CTTGTATCGTTATGTCGACCACCCAATCAGTATATTTTGGGTCATGAATG
ATCCCTTCATCGTCGTCAACGAAGAACAAGCCTTACGACGTGTGTTGGGA
GGCGCCAATGGTCTTTATACAAAACCCAGGTATTTTGGATACCGCTCCAA
AGCAGTCAGTAAAGCTGTACAGTTTGAAAAGAATCTGGTGGCGAGGGAAT
CCATTCAGTATGAACCGAATGGCGATGTTTCTCGAGCTGCCTTGGAAGCC
ATGATTGTCTCGTCGTTTGGTACTATCAAAACCTCCATGGTTGATCTCTT
GCATCAACTCGAGCTTGCTTCATTTGACGAATCTGGTGCCTTACCCACTG
TCGAGGGTGACACTGTCCGCCCCGTTCGTCGCTCTATTGTTGGACTCAAT
TTGAATCTCTTGTTCGGCGTTACCGGAGACCGCGGACATGAAATCGATCA
TCACCATGTTTCAGAAACCATTTCGTCCGCTGGAAACGAATTTGCGAGGC
GAATGGTCAACCCCTTCAAAGTGCTTGTCGACCTACCGAGCAATCTCAAG
TTCATGTGGGATGTAGGTAGTCTGATATCTCTCGGTAGAAGATTATGTGG
TATCTTGGACGATACCGTCAAGTCTTCCATGGACTGCCCATTAGGGTTGG
ACAATACTGCCAAGCCTTCCATTGACTGCCCATCACAGCAGCGTTGCAAA
ATGAATGCTTCTGGAGCAAGCTGGGTACATGCGTGGATCGGAAAGGTAGG
AACTATTGGCAAGCTTGGGAAAGTCGTTGGTTTGCTGATGGCTTCAACAC
AGACCGTACCCCTCGCTGCTGTGTGGATGCTTCATCTAGTGGCAAATGAT
GAGAAGGTGAAGACGATGTTGAGAAAGGAGCTGAAGGATCTTGGCGTTCA
TACTATCAGGGACTTGGGATACGAACATCTTGACAAAATGAAGATGGCGG
ATGCGGTGGTCAAGGAAACGCTACGCTTATATCCGCCGTTCCCTCTCATT
CAGAGGCAGGCGCGTCTCGACGACGTGCTCGCCGATATCAGCGTTTCATC
CGGTTCTATTGTCTATGTCGTACCATGGCTCGTTCATAGGAATCCAAAGT
ACTGGGCGAATGCTCACGAGTTCAAACCTGAAAGGTTTCTGGAGGGAAGC
AGTTCGCATGGAGATGCACCAAGCGATTGGTTATATCTTCCATTTGGTCG
AGGGTCAAGAATGTGCGCTGGTTCTAAACTTGCGCTTACAGAACTCAAGA
TCCTTCTTTGCCACACCATTTGCTCGTATGAATGGGAAAGTAGACGAGAA
ATTATTCTTCGAGATAGCAGGTTCCCAGAGTTGGGCATGAACCCGAAGGG
AATACGAATGTCGTTCCGAAGGAGGTGA