Ggra1765.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1765.t1
Unique NameGgra1765.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:571222..572615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FH09
Preferred nameHRT2
PFAMsDUF89
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0097237,GO:0098754,GO:1990748
Evalue1.06e-124
EggNOG OGsKOG3870@1|root,KOG3870@2759|Eukaryota
EC3.1.3.11
Descriptionprotein carboxyl O-methyltransferase activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1765Ggra1765Gracilaria gracilis GNS1m malegenetig00000050_pilon 571222..572615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1765.t1Ggra1765.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 571222..572615 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1765.t1.start1Ggra1765.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 571222..571224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1765.t1.CDS1Ggra1765.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 571222..571550 +
Ggra1765.t1.CDS2Ggra1765.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 571628..572615 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1765.t1.exon1Ggra1765.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 571222..571550 +
Ggra1765.t1.exon2Ggra1765.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 571628..572615 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1765.t1.intron1Ggra1765.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 571551..571627 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1765.t1.stop1Ggra1765.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 572613..572615 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1765.t1 ID=Ggra1765.t1|Name=Ggra1765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MIEAKAPRAPLPPVLTSDTPGTWAYDTMSRRVRTDILARVFRENVFSPSV
LQRLKQLDHELSQALRTPLTFVQNDGGPDVSVWNELILKPVVEKRLTWLS
APWAIAEFYLYRRLMTAIDYFRSPVDPFQLQKDLGLTSAVESISMLAVRI
NDVLSVPPLGLADPVHLSHFQSFVLTSLWGNRMDLSLWPVGGADQATVNA
TGGHTHTAQSFSTVLEAGQKMILSNHITPLVGYVSKLAPTRFDIIVDNAG
FELFCDLCLADFLVQTRMATVVHIQLKAHPTFVSDAMAKDVRATISFLQA
MRTAQNAPTPSSVLGDRWASHLSSRRWVLTEQFFWVQPQPMWEMPPPVHE
DLSTSALTFVKGDANYRRLLGDRDWPLDTPFHDILCYFPSPVCALRTLKA
ELGCGMSKQQTERAAREDDKWLVAGKYGVVQFCDTRLV*
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spliced messenger RNA

>Ggra1765.t1 ID=Ggra1765.t1|Name=Ggra1765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000050_pilon:571222..572615+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGAAGCGAAAGCGCCCCGCGCGCCGCTGCCGCCCGTGTTGACTTC
TGACACGCCCGGAACATGGGCGTACGACACCATGTCGCGCCGCGTGCGCA
CCGACATTCTGGCGCGCGTCTTCCGCGAGAACGTCTTCTCGCCGTCCGTG
CTACAGCGCCTCAAGCAGCTGGACCATGAGCTCAGCCAAGCGCTGCGCAC
CCCGCTCACCTTCGTGCAGAACGACGGCGGCCCGGACGTGTCCGTCTGGA
ACGAGCTCATTCTCAAGCCCGTCGTCGAGAAGCGTCTCACCTGGCTCTCT
GCCCCGTGGGCGATTGCCGAGTTCTACCTATATCGTCGACTCATGACTGC
TATCGATTACTTCCGTTCGCCAGTCGACCCTTTTCAGTTGCAGAAGGACC
TGGGCCTCACCTCTGCCGTCGAGTCCATCTCCATGTTGGCCGTGCGTATC
AATGATGTGCTCTCCGTCCCTCCGCTCGGGCTCGCTGACCCTGTGCACCT
CAGTCATTTTCAGAGCTTCGTGCTCACATCTTTGTGGGGAAACCGCATGG
ATCTCAGCCTTTGGCCTGTGGGAGGCGCTGATCAAGCCACGGTAAACGCT
ACCGGTGGGCACACACATACAGCTCAGTCCTTTTCCACCGTGCTTGAAGC
CGGTCAGAAGATGATCCTCTCCAACCACATCACTCCGCTCGTTGGCTATG
TGTCAAAATTGGCTCCAACACGTTTTGATATCATCGTCGACAATGCTGGC
TTTGAGCTGTTTTGTGACCTGTGTTTAGCTGACTTTCTTGTACAAACCCG
CATGGCCACGGTTGTTCACATTCAACTCAAGGCCCATCCCACCTTTGTCA
GCGATGCAATGGCGAAGGATGTGAGGGCTACTATATCATTCTTGCAGGCC
ATGCGTACGGCACAAAACGCACCCACCCCGTCTAGCGTTTTGGGCGATCG
ATGGGCGTCTCATCTCTCCAGTCGCCGTTGGGTCTTGACTGAACAGTTCT
TCTGGGTGCAGCCTCAACCAATGTGGGAAATGCCACCTCCCGTACACGAA
GATCTGTCGACCTCCGCGTTAACGTTTGTCAAGGGAGATGCCAATTATCG
CCGACTGCTTGGGGATAGAGACTGGCCCCTTGACACTCCTTTTCACGATA
TCCTATGCTACTTCCCGTCTCCTGTGTGCGCGTTGCGCACGCTCAAAGCG
GAGCTTGGATGTGGAATGAGCAAACAACAGACGGAGCGTGCGGCCCGTGA
AGATGACAAATGGCTTGTTGCTGGTAAATACGGAGTCGTGCAGTTTTGCG
ATACACGACTAGTCTAG
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protein sequence of Ggra1765.t1

>Ggra1765.t1 ID=Ggra1765.t1|Name=Ggra1765.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MIEAKAPRAPLPPVLTSDTPGTWAYDTMSRRVRTDILARVFRENVFSPSV
LQRLKQLDHELSQALRTPLTFVQNDGGPDVSVWNELILKPVVEKRLTWLS
APWAIAEFYLYRRLMTAIDYFRSPVDPFQLQKDLGLTSAVESISMLAVRI
NDVLSVPPLGLADPVHLSHFQSFVLTSLWGNRMDLSLWPVGGADQATVNA
TGGHTHTAQSFSTVLEAGQKMILSNHITPLVGYVSKLAPTRFDIIVDNAG
FELFCDLCLADFLVQTRMATVVHIQLKAHPTFVSDAMAKDVRATISFLQA
MRTAQNAPTPSSVLGDRWASHLSSRRWVLTEQFFWVQPQPMWEMPPPVHE
DLSTSALTFVKGDANYRRLLGDRDWPLDTPFHDILCYFPSPVCALRTLKA
ELGCGMSKQQTERAAREDDKWLVAGKYGVVQFCDTRLV*
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mRNA from alignment at tig00000050_pilon:571222..572615+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1765.t1 ID=Ggra1765.t1|Name=Ggra1765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1394bp|location=Sequence derived from alignment at tig00000050_pilon:571222..572615+ (Gracilaria gracilis GNS1m male)
ATGATTGAAGCGAAAGCGCCCCGCGCGCCGCTGCCGCCCGTGTTGACTTC
TGACACGCCCGGAACATGGGCGTACGACACCATGTCGCGCCGCGTGCGCA
CCGACATTCTGGCGCGCGTCTTCCGCGAGAACGTCTTCTCGCCGTCCGTG
CTACAGCGCCTCAAGCAGCTGGACCATGAGCTCAGCCAAGCGCTGCGCAC
CCCGCTCACCTTCGTGCAGAACGACGGCGGCCCGGACGTGTCCGTCTGGA
ACGAGCTCATTCTCAAGCCCGTCGTCGAGAAGCGTCTCACCTGGCTCTCT
GCCCCGTGGGCGATTGCCGAGTTCTACCTGTGAGTCGTGCCCCCACCCGC
GCTTGCGTTCTGCCCCGTGCCCCAGTGCCGATCCGTTTGCTGACTCTTGT
ACGTAGATATCGTCGACTCATGACTGCTATCGATTACTTCCGTTCGCCAG
TCGACCCTTTTCAGTTGCAGAAGGACCTGGGCCTCACCTCTGCCGTCGAG
TCCATCTCCATGTTGGCCGTGCGTATCAATGATGTGCTCTCCGTCCCTCC
GCTCGGGCTCGCTGACCCTGTGCACCTCAGTCATTTTCAGAGCTTCGTGC
TCACATCTTTGTGGGGAAACCGCATGGATCTCAGCCTTTGGCCTGTGGGA
GGCGCTGATCAAGCCACGGTAAACGCTACCGGTGGGCACACACATACAGC
TCAGTCCTTTTCCACCGTGCTTGAAGCCGGTCAGAAGATGATCCTCTCCA
ACCACATCACTCCGCTCGTTGGCTATGTGTCAAAATTGGCTCCAACACGT
TTTGATATCATCGTCGACAATGCTGGCTTTGAGCTGTTTTGTGACCTGTG
TTTAGCTGACTTTCTTGTACAAACCCGCATGGCCACGGTTGTTCACATTC
AACTCAAGGCCCATCCCACCTTTGTCAGCGATGCAATGGCGAAGGATGTG
AGGGCTACTATATCATTCTTGCAGGCCATGCGTACGGCACAAAACGCACC
CACCCCGTCTAGCGTTTTGGGCGATCGATGGGCGTCTCATCTCTCCAGTC
GCCGTTGGGTCTTGACTGAACAGTTCTTCTGGGTGCAGCCTCAACCAATG
TGGGAAATGCCACCTCCCGTACACGAAGATCTGTCGACCTCCGCGTTAAC
GTTTGTCAAGGGAGATGCCAATTATCGCCGACTGCTTGGGGATAGAGACT
GGCCCCTTGACACTCCTTTTCACGATATCCTATGCTACTTCCCGTCTCCT
GTGTGCGCGTTGCGCACGCTCAAAGCGGAGCTTGGATGTGGAATGAGCAA
ACAACAGACGGAGCGTGCGGCCCGTGAAGATGACAAATGGCTTGTTGCTG
GTAAATACGGAGTCGTGCAGTTTTGCGATACACGACTAGTCTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:571222..572615+

>Ggra1765.t1 ID=Ggra1765.t1|Name=Ggra1765.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000050_pilon:571222..572615+ (Gracilaria gracilis GNS1m male)
ATGATTGAAGCGAAAGCGCCCCGCGCGCCGCTGCCGCCCGTGTTGACTTC
TGACACGCCCGGAACATGGGCGTACGACACCATGTCGCGCCGCGTGCGCA
CCGACATTCTGGCGCGCGTCTTCCGCGAGAACGTCTTCTCGCCGTCCGTG
CTACAGCGCCTCAAGCAGCTGGACCATGAGCTCAGCCAAGCGCTGCGCAC
CCCGCTCACCTTCGTGCAGAACGACGGCGGCCCGGACGTGTCCGTCTGGA
ACGAGCTCATTCTCAAGCCCGTCGTCGAGAAGCGTCTCACCTGGCTCTCT
GCCCCGTGGGCGATTGCCGAGTTCTACCTATATCGTCGACTCATGACTGC
TATCGATTACTTCCGTTCGCCAGTCGACCCTTTTCAGTTGCAGAAGGACC
TGGGCCTCACCTCTGCCGTCGAGTCCATCTCCATGTTGGCCGTGCGTATC
AATGATGTGCTCTCCGTCCCTCCGCTCGGGCTCGCTGACCCTGTGCACCT
CAGTCATTTTCAGAGCTTCGTGCTCACATCTTTGTGGGGAAACCGCATGG
ATCTCAGCCTTTGGCCTGTGGGAGGCGCTGATCAAGCCACGGTAAACGCT
ACCGGTGGGCACACACATACAGCTCAGTCCTTTTCCACCGTGCTTGAAGC
CGGTCAGAAGATGATCCTCTCCAACCACATCACTCCGCTCGTTGGCTATG
TGTCAAAATTGGCTCCAACACGTTTTGATATCATCGTCGACAATGCTGGC
TTTGAGCTGTTTTGTGACCTGTGTTTAGCTGACTTTCTTGTACAAACCCG
CATGGCCACGGTTGTTCACATTCAACTCAAGGCCCATCCCACCTTTGTCA
GCGATGCAATGGCGAAGGATGTGAGGGCTACTATATCATTCTTGCAGGCC
ATGCGTACGGCACAAAACGCACCCACCCCGTCTAGCGTTTTGGGCGATCG
ATGGGCGTCTCATCTCTCCAGTCGCCGTTGGGTCTTGACTGAACAGTTCT
TCTGGGTGCAGCCTCAACCAATGTGGGAAATGCCACCTCCCGTACACGAA
GATCTGTCGACCTCCGCGTTAACGTTTGTCAAGGGAGATGCCAATTATCG
CCGACTGCTTGGGGATAGAGACTGGCCCCTTGACACTCCTTTTCACGATA
TCCTATGCTACTTCCCGTCTCCTGTGTGCGCGTTGCGCACGCTCAAAGCG
GAGCTTGGATGTGGAATGAGCAAACAACAGACGGAGCGTGCGGCCCGTGA
AGATGACAAATGGCTTGTTGCTGGTAAATACGGAGTCGTGCAGTTTTGCG
ATACACGACTAGTCTAG
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