Ggra1776.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1776.t1
Unique NameGgra1776.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Homology
BLAST of Ggra1776.t1 vs. uniprot
Match: A0A2V3IJ49 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ49_9FLOR)

HSP 1 Score: 262 bits (669), Expect = 1.850e-84
Identity = 114/163 (69.94%), Postives = 138/163 (84.66%), Query Frame = 0
Query:  186 RTGTQYDWIYKTRPDVAFGSRISVPDELEGRFLYTNQHIPGASVHAHPWLRKKFKENAGVLGPPIGDHVMAASRKVANIAFRAYSAFEDCDLYELPSGTVNAEVGLTYWLARNNVHYKTLPWFWMLVRDKEGPECERVMYIKGDTEQLLEKCNRYRESGHIPE 348
            R+G  YDWIYKTRPD+AFGSR+SVPDEL+  +LYTNQHIPG S HAH WLR+KF E A +LG P+GD VM ASRKVA  AF+A  AF DC+LY+LP+GT+NAEVGLTYWL RN++ Y+TL WFW+LVRD EGPECER++YIKG+T+ L+EKC +Y+ SGHIPE
Sbjct:    2 RSGFTYDWIYKTRPDIAFGSRLSVPDELDDSYLYTNQHIPGTSTHAHRWLRQKFGEKAKILGSPVGDQVMVASRKVAQKAFQASRAFADCNLYDLPNGTLNAEVGLTYWLVRNDIQYRTLAWFWILVRDFEGPECERLLYIKGETQDLMEKCMKYKRSGHIPE 164          
BLAST of Ggra1776.t1 vs. uniprot
Match: A0A7S4A1A7 (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1A7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.890e-7
Identity = 66/261 (25.29%), Postives = 102/261 (39.08%), Query Frame = 0
Query:   70 QRIAVCVAGHLRSFHKPSVHISIKRNVIDTLRNAGCF-VDVFFHVGKRDVPRKGRKKAATYISAHVL----RYFRPVKTSFYNNNHPDCSHRPCRNASGEVCPYSLIRLGQCLDLIEEYENRTGTQYDWIYKTRPDVAFGSRISVPDELEGRFLYTNQHIPGASVHAHPWLRKKFKENAGVLGPPIGDHVMAASRKVANIAFRAYSAF---EDCDLYELPS-GTVNAEVGLTYWLARNNVHYKTLPWF-WMLVRDKEGPEC 320
            Q+ AVC AG+     +P V    K  ++D L   GC  VD FF++   +  ++     A   S   +    R F PV  +    +    S     +A        L +   C  L+E  E     +YDW+ +TRPD+A+ + +     L    +Y +QH          W              P+GD    A  K+A   FRA  A      CD  ++   G + AE  L   LA   +  +    F ++  R +EG +C
Sbjct:   29 QQCAVCFAGNAVGLMQPQVRRFAKERMVDAL---GCAAVDSFFYLTLDNTQQRDDLLPAPNASIEAVHAAAREFNPVSVTMRVRDDSLGSDEDDAHAQ-------LSKAAACYALVEASELAARKRYDWVVRTRPDLAWVAAVPPVKSLYEDRVYVSQHS---------W--------------PVGDAFFVAPGKLAREVFRAVDALGQDSHCDASQVEKIGHLAAESALHRHLASRKIPTQLYDGFAFVAARWREGGDC 256          
The following BLAST results are available for this feature:
BLAST of Ggra1776.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJ491.850e-8469.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S4A1A77.890e-725.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..359
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:596631..597710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1776.t1Ggra1776.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 596631..597710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1776.t1 ID=Ggra1776.t1|Name=Ggra1776.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MVLYSNRQRNVPFAKQFFLAMTLFLPPCLFIHENEHLWISKLSHSSQLPS
LQDATILVKGFSAPSTNSQQRIAVCVAGHLRSFHKPSVHISIKRNVIDTL
RNAGCFVDVFFHVGKRDVPRKGRKKAATYISAHVLRYFRPVKTSFYNNNH
PDCSHRPCRNASGEVCPYSLIRLGQCLDLIEEYENRTGTQYDWIYKTRPD
VAFGSRISVPDELEGRFLYTNQHIPGASVHAHPWLRKKFKENAGVLGPPI
GDHVMAASRKVANIAFRAYSAFEDCDLYELPSGTVNAEVGLTYWLARNNV
HYKTLPWFWMLVRDKEGPECERVMYIKGDTEQLLEKCNRYRESGHIPEQM
QSYRLLTNM*
back to top