Ggra1776.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1776.t1
Unique Name	Ggra1776.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:596631..597710 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004343034.1
PFAMs	Exostosin,NAM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20870
Evalue	5.58e-05
EggNOG OGs	KOG1021@1\|root,KOG1021@2759\|Eukaryota
Description	macromolecule glycosylation
COG category	S
CAZy	GT47
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1776	Ggra1776	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 596631..597710 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1776.t1.start1	Ggra1776.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 596631..596633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1776.t1.CDS1	Ggra1776.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 596631..597710 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1776.t1.exon1	Ggra1776.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 596631..597710 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1776.t1.stop1	Ggra1776.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 597708..597710 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1776.t1	Ggra1776.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 596631..597710 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:596631..597710+
coding sequence from alignment at tig00000050_pilon:596631..597710+

mRNA sequence

>Ggra1776.t1 ID=Ggra1776.t1|Name=Ggra1776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MVLYSNRQRNVPFAKQFFLAMTLFLPPCLFIHENEHLWISKLSHSSQLPS
LQDATILVKGFSAPSTNSQQRIAVCVAGHLRSFHKPSVHISIKRNVIDTL
RNAGCFVDVFFHVGKRDVPRKGRKKAATYISAHVLRYFRPVKTSFYNNNH
PDCSHRPCRNASGEVCPYSLIRLGQCLDLIEEYENRTGTQYDWIYKTRPD
VAFGSRISVPDELEGRFLYTNQHIPGASVHAHPWLRKKFKENAGVLGPPI
GDHVMAASRKVANIAFRAYSAFEDCDLYELPSGTVNAEVGLTYWLARNNV
HYKTLPWFWMLVRDKEGPECERVMYIKGDTEQLLEKCNRYRESGHIPEQM
QSYRLLTNM*

spliced messenger RNA

>Ggra1776.t1 ID=Ggra1776.t1|Name=Ggra1776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000050_pilon:596631..597710+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACTATATTCCAATCGACAACGGAATGTCCCGTTCGCAAAACAGTT
CTTCTTAGCTATGACTCTTTTCCTTCCCCCGTGTCTATTCATTCATGAAA
ACGAGCACTTATGGATATCTAAGCTTTCACATTCTTCACAACTTCCCAGC
CTTCAAGATGCGACAATTCTAGTGAAAGGGTTTTCTGCTCCATCAACAAA
TTCCCAGCAGAGGATTGCGGTTTGCGTGGCTGGCCACTTACGAAGTTTTC
ACAAGCCTTCCGTGCATATATCTATCAAGCGGAACGTGATTGATACCCTA
CGCAATGCCGGGTGCTTCGTTGATGTTTTCTTCCACGTAGGAAAACGAGA
TGTTCCCAGGAAGGGTAGGAAAAAGGCGGCTACCTATATTTCTGCCCATG
TTTTACGTTACTTCCGCCCGGTGAAGACATCGTTCTACAATAATAATCAT
CCAGATTGCTCCCATAGACCGTGTCGGAACGCAAGTGGAGAAGTGTGTCC
GTACTCTTTGATTCGCTTAGGACAATGCTTAGATCTCATCGAGGAATACG
AAAACCGAACAGGAACCCAATATGACTGGATCTATAAGACCCGGCCGGAT
GTAGCGTTTGGTTCGCGGATATCTGTTCCGGACGAGTTAGAAGGCCGTTT
TCTTTATACAAACCAACACATTCCTGGAGCCTCGGTACACGCTCATCCGT
GGTTGCGAAAGAAGTTCAAGGAAAATGCCGGTGTGCTTGGTCCACCTATC
GGTGATCATGTCATGGCTGCGTCAAGAAAAGTTGCCAACATAGCATTTAG
GGCTTATTCTGCTTTCGAAGATTGTGACCTTTATGAACTACCGTCGGGGA
CGGTCAACGCAGAAGTGGGCTTAACATACTGGCTTGCGCGCAACAACGTC
CATTATAAGACGCTCCCATGGTTTTGGATGCTCGTTCGAGACAAAGAAGG
TCCTGAATGTGAACGTGTGATGTATATAAAGGGTGATACAGAACAGCTCT
TGGAAAAATGCAATAGGTACCGAGAAAGCGGTCATATTCCGGAACAGATG
CAGAGTTACCGACTGCTCACGAATATGTAG

protein sequence of Ggra1776.t1

>Ggra1776.t1 ID=Ggra1776.t1|Name=Ggra1776.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MVLYSNRQRNVPFAKQFFLAMTLFLPPCLFIHENEHLWISKLSHSSQLPS
LQDATILVKGFSAPSTNSQQRIAVCVAGHLRSFHKPSVHISIKRNVIDTL
RNAGCFVDVFFHVGKRDVPRKGRKKAATYISAHVLRYFRPVKTSFYNNNH
PDCSHRPCRNASGEVCPYSLIRLGQCLDLIEEYENRTGTQYDWIYKTRPD
VAFGSRISVPDELEGRFLYTNQHIPGASVHAHPWLRKKFKENAGVLGPPI
GDHVMAASRKVANIAFRAYSAFEDCDLYELPSGTVNAEVGLTYWLARNNV
HYKTLPWFWMLVRDKEGPECERVMYIKGDTEQLLEKCNRYRESGHIPEQM
QSYRLLTNM*

mRNA from alignment at tig00000050_pilon:596631..597710+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1776.t1 ID=Ggra1776.t1|Name=Ggra1776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000050_pilon:596631..597710+ (Gracilaria gracilis GNS1m male)
ATGGTACTATATTCCAATCGACAACGGAATGTCCCGTTCGCAAAACAGTT
CTTCTTAGCTATGACTCTTTTCCTTCCCCCGTGTCTATTCATTCATGAAA
ACGAGCACTTATGGATATCTAAGCTTTCACATTCTTCACAACTTCCCAGC
CTTCAAGATGCGACAATTCTAGTGAAAGGGTTTTCTGCTCCATCAACAAA
TTCCCAGCAGAGGATTGCGGTTTGCGTGGCTGGCCACTTACGAAGTTTTC
ACAAGCCTTCCGTGCATATATCTATCAAGCGGAACGTGATTGATACCCTA
CGCAATGCCGGGTGCTTCGTTGATGTTTTCTTCCACGTAGGAAAACGAGA
TGTTCCCAGGAAGGGTAGGAAAAAGGCGGCTACCTATATTTCTGCCCATG
TTTTACGTTACTTCCGCCCGGTGAAGACATCGTTCTACAATAATAATCAT
CCAGATTGCTCCCATAGACCGTGTCGGAACGCAAGTGGAGAAGTGTGTCC
GTACTCTTTGATTCGCTTAGGACAATGCTTAGATCTCATCGAGGAATACG
AAAACCGAACAGGAACCCAATATGACTGGATCTATAAGACCCGGCCGGAT
GTAGCGTTTGGTTCGCGGATATCTGTTCCGGACGAGTTAGAAGGCCGTTT
TCTTTATACAAACCAACACATTCCTGGAGCCTCGGTACACGCTCATCCGT
GGTTGCGAAAGAAGTTCAAGGAAAATGCCGGTGTGCTTGGTCCACCTATC
GGTGATCATGTCATGGCTGCGTCAAGAAAAGTTGCCAACATAGCATTTAG
GGCTTATTCTGCTTTCGAAGATTGTGACCTTTATGAACTACCGTCGGGGA
CGGTCAACGCAGAAGTGGGCTTAACATACTGGCTTGCGCGCAACAACGTC
CATTATAAGACGCTCCCATGGTTTTGGATGCTCGTTCGAGACAAAGAAGG
TCCTGAATGTGAACGTGTGATGTATATAAAGGGTGATACAGAACAGCTCT
TGGAAAAATGCAATAGGTACCGAGAAAGCGGTCATATTCCGGAACAGATG
CAGAGTTACCGACTGCTCACGAATATGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:596631..597710+

>Ggra1776.t1 ID=Ggra1776.t1|Name=Ggra1776.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000050_pilon:596631..597710+ (Gracilaria gracilis GNS1m male)
ATGGTACTATATTCCAATCGACAACGGAATGTCCCGTTCGCAAAACAGTT
CTTCTTAGCTATGACTCTTTTCCTTCCCCCGTGTCTATTCATTCATGAAA
ACGAGCACTTATGGATATCTAAGCTTTCACATTCTTCACAACTTCCCAGC
CTTCAAGATGCGACAATTCTAGTGAAAGGGTTTTCTGCTCCATCAACAAA
TTCCCAGCAGAGGATTGCGGTTTGCGTGGCTGGCCACTTACGAAGTTTTC
ACAAGCCTTCCGTGCATATATCTATCAAGCGGAACGTGATTGATACCCTA
CGCAATGCCGGGTGCTTCGTTGATGTTTTCTTCCACGTAGGAAAACGAGA
TGTTCCCAGGAAGGGTAGGAAAAAGGCGGCTACCTATATTTCTGCCCATG
TTTTACGTTACTTCCGCCCGGTGAAGACATCGTTCTACAATAATAATCAT
CCAGATTGCTCCCATAGACCGTGTCGGAACGCAAGTGGAGAAGTGTGTCC
GTACTCTTTGATTCGCTTAGGACAATGCTTAGATCTCATCGAGGAATACG
AAAACCGAACAGGAACCCAATATGACTGGATCTATAAGACCCGGCCGGAT
GTAGCGTTTGGTTCGCGGATATCTGTTCCGGACGAGTTAGAAGGCCGTTT
TCTTTATACAAACCAACACATTCCTGGAGCCTCGGTACACGCTCATCCGT
GGTTGCGAAAGAAGTTCAAGGAAAATGCCGGTGTGCTTGGTCCACCTATC
GGTGATCATGTCATGGCTGCGTCAAGAAAAGTTGCCAACATAGCATTTAG
GGCTTATTCTGCTTTCGAAGATTGTGACCTTTATGAACTACCGTCGGGGA
CGGTCAACGCAGAAGTGGGCTTAACATACTGGCTTGCGCGCAACAACGTC
CATTATAAGACGCTCCCATGGTTTTGGATGCTCGTTCGAGACAAAGAAGG
TCCTGAATGTGAACGTGTGATGTATATAAAGGGTGATACAGAACAGCTCT
TGGAAAAATGCAATAGGTACCGAGAAAGCGGTCATATTCCGGAACAGATG
CAGAGTTACCGACTGCTCACGAATATGTAG