Ggra1849.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1849.t1
Unique NameGgra1849.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:900641..901975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1849Ggra1849Gracilaria gracilis GNS1m malegenetig00000050_pilon 900641..901975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1849.t1Ggra1849.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 900641..901975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1849.t1.start1Ggra1849.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 900641..900643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1849.t1.CDS1Ggra1849.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 900641..900750 +
Ggra1849.t1.CDS2Ggra1849.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 901096..901975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1849.t1.exon1Ggra1849.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 900641..900750 +
Ggra1849.t1.exon2Ggra1849.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 901096..901975 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1849.t1.intron1Ggra1849.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 900751..901095 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1849.t1.stop1Ggra1849.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 901973..901975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1849.t1 ID=Ggra1849.t1|Name=Ggra1849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
MEKGVPGDKGICMIRSWKEMGSRAAEEVGSKSVFMRRRGASGSASPDGGT
RDATGKKEEVGDKVCMGEKEGSGDGEGGGGDGGGGGGGDGGPERRFAAEM
EERLRRIGVDLKEHLDDWLSEMVGEMGGVVLSVSEIRVPTDLISTIRKRM
KLAGMGTERHVSGMVACVGRELVTLRRENMGLRGHVEVLEAQVGQVEKAC
ELLLEVKKLVRGGGVGREAGREKGSPVTPGSRGGGGCVRWRSGEGDGGEV
GGSRLRKRRKGGVMVDEDGKVCVPWQPPGGAPLVGFGSAAAAVRTAERIL
EEQEEKRLGGVGSRFGARMVYENGESVRL*
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spliced messenger RNA

>Ggra1849.t1 ID=Ggra1849.t1|Name=Ggra1849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000050_pilon:900641..901975+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggaaaaaggtgttccaggggataaggggatttgtatgattcggtcatg
gaaagaaatgggcagcagggctgcagaggaggtagggtcgaagagtgtgt
ttatgagaagacgaggagctagtggctctgcttcaccggacggaggtacc
agagacgccaccgggaagaaggaggaggttggggacaaggtttgcatggg
ggagaaggagggaagtggggatggagagggaggtgggggcgatgggggtg
gagggggtggaggggatggcggaccggagaggaggtttgccgcggagatg
gaggagcggttgagaaggattggagtggatctgaaggagcatttggacga
ctggctttctgagatggttggtgagatgggaggggttgtgctgagtgtgt
cggagattagggtgccaacggatttgatttcgacgattcggaaaaggatg
aagttggctggaatggggactgaaaggcatgtgagtgggatggtagcgtg
cgttgggagggagctggtgacgctgagaagggagaatatggggctgaggg
gacatgtggaggtgttggaggcgcaagtgggacaggtggagaaggcgtgc
gaattgttgttggaggtgaagaaactggtgaggggaggaggcgttgggag
ggaggcgggaagagagaaagggtcaccggtgacgcctggctcccgtggtg
ggggtgggtgcgtgaggtggaggagcggagaaggggatggaggggaggtt
gggggaagtcggctgaggaagaggcgaaagggtggggtgatggtggacga
ggatgggaaggtgtgtgtgccgtggcagccgccgggtggagcgccactag
ttgggtttggtagtgcggcagcggctgttcgaacggcggagcgcatactg
gaggagcaagaggagaagaggctgggaggggttggaagccggtttggggc
taggatggtgtacgagaatggagagagtgttcggttgtag
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protein sequence of Ggra1849.t1

>Ggra1849.t1 ID=Ggra1849.t1|Name=Ggra1849.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MEKGVPGDKGICMIRSWKEMGSRAAEEVGSKSVFMRRRGASGSASPDGGT
RDATGKKEEVGDKVCMGEKEGSGDGEGGGGDGGGGGGGDGGPERRFAAEM
EERLRRIGVDLKEHLDDWLSEMVGEMGGVVLSVSEIRVPTDLISTIRKRM
KLAGMGTERHVSGMVACVGRELVTLRRENMGLRGHVEVLEAQVGQVEKAC
ELLLEVKKLVRGGGVGREAGREKGSPVTPGSRGGGGCVRWRSGEGDGGEV
GGSRLRKRRKGGVMVDEDGKVCVPWQPPGGAPLVGFGSAAAAVRTAERIL
EEQEEKRLGGVGSRFGARMVYENGESVRL*
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mRNA from alignment at tig00000050_pilon:900641..901975+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1849.t1 ID=Ggra1849.t1|Name=Ggra1849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000050_pilon:900641..901975+ (Gracilaria gracilis GNS1m male)
atggaaaaaggtgttccaggggataaggggatttgtatgattcggtcatg
gaaagaaatgggcagcagggctgcagaggaggtagggtcgaagagtgtgt
ttatgagaaggtatgcagtgaaatctagcatagaaagtaagagtttatgg
taccgttgatacttgagaggtggtgcatcatgggtttcattgggatatgg
catggaccgaggtcgggaaaatgtggagatttctaggaaaaaaatggaaa
ttgtgtggaatggcgggaaataggagtggatgtgaatggggtataaaaag
ttgtgccgcgcaactgggtgtgtggccgacagtgccatgggtgtgcggag
tgggggagagtgctgcaactgttgggttcatctcgcttgttcttatctat
cttcgttatcgtgaaccgccgtttatttctgcgatgtcgaatgggtacgt
cgaagacgaggagctagtggctctgcttcaccggacggaggtaccagaga
cgccaccgggaagaaggaggaggttggggacaaggtttgcatgggggaga
aggagggaagtggggatggagagggaggtgggggcgatgggggtggaggg
ggtggaggggatggcggaccggagaggaggtttgccgcggagatggagga
gcggttgagaaggattggagtggatctgaaggagcatttggacgactggc
tttctgagatggttggtgagatgggaggggttgtgctgagtgtgtcggag
attagggtgccaacggatttgatttcgacgattcggaaaaggatgaagtt
ggctggaatggggactgaaaggcatgtgagtgggatggtagcgtgcgttg
ggagggagctggtgacgctgagaagggagaatatggggctgaggggacat
gtggaggtgttggaggcgcaagtgggacaggtggagaaggcgtgcgaatt
gttgttggaggtgaagaaactggtgaggggaggaggcgttgggagggagg
cgggaagagagaaagggtcaccggtgacgcctggctcccgtggtgggggt
gggtgcgtgaggtggaggagcggagaaggggatggaggggaggttggggg
aagtcggctgaggaagaggcgaaagggtggggtgatggtggacgaggatg
ggaaggtgtgtgtgccgtggcagccgccgggtggagcgccactagttggg
tttggtagtgcggcagcggctgttcgaacggcggagcgcatactggagga
gcaagaggagaagaggctgggaggggttggaagccggtttggggctagga
tggtgtacgagaatggagagagtgttcggttgtag
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Coding sequence (CDS) from alignment at tig00000050_pilon:900641..901975+

>Ggra1849.t1 ID=Ggra1849.t1|Name=Ggra1849.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000050_pilon:900641..901975+ (Gracilaria gracilis GNS1m male)
atggaaaaaggtgttccaggggataaggggatttgtatgattcggtcatg
gaaagaaatgggcagcagggctgcagaggaggtagggtcgaagagtgtgt
ttatgagaagacgaggagctagtggctctgcttcaccggacggaggtacc
agagacgccaccgggaagaaggaggaggttggggacaaggtttgcatggg
ggagaaggagggaagtggggatggagagggaggtgggggcgatgggggtg
gagggggtggaggggatggcggaccggagaggaggtttgccgcggagatg
gaggagcggttgagaaggattggagtggatctgaaggagcatttggacga
ctggctttctgagatggttggtgagatgggaggggttgtgctgagtgtgt
cggagattagggtgccaacggatttgatttcgacgattcggaaaaggatg
aagttggctggaatggggactgaaaggcatgtgagtgggatggtagcgtg
cgttgggagggagctggtgacgctgagaagggagaatatggggctgaggg
gacatgtggaggtgttggaggcgcaagtgggacaggtggagaaggcgtgc
gaattgttgttggaggtgaagaaactggtgaggggaggaggcgttgggag
ggaggcgggaagagagaaagggtcaccggtgacgcctggctcccgtggtg
ggggtgggtgcgtgaggtggaggagcggagaaggggatggaggggaggtt
gggggaagtcggctgaggaagaggcgaaagggtggggtgatggtggacga
ggatgggaaggtgtgtgtgccgtggcagccgccgggtggagcgccactag
ttgggtttggtagtgcggcagcggctgttcgaacggcggagcgcatactg
gaggagcaagaggagaagaggctgggaggggttggaagccggtttggggc
taggatggtgtacgagaatggagagagtgttcggttgtag
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