Ggra1862.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1862.t1
Unique NameGgra1862.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:974693..975108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707914.1
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0000096,GO:0000097,GO:0000103,GO:0000302,GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009636,GO:0009987,GO:0010035,GO:0015035,GO:0015036,GO:0016053,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019379,GO:0019419,GO:0019725,GO:0019752,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043094,GO:0043102,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046394,GO:0046677,GO:0047134,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071265,GO:0071267,GO:0071704,GO:0072593,GO:0080134,GO:0080135,GO:0097237,GO:0098754,GO:0098869,GO:1900407,GO:1900409,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902882,GO:1902884,GO:1990355,GO:1990748
Evalue7.48e-25
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota
Descriptioncell redox homeostasis
COG categoryCO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1862Ggra1862Gracilaria gracilis GNS1m malegenetig00000050_pilon 974693..975108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1Ggra1862.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 974693..975108 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1.stop1Ggra1862.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 974693..974695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1.CDS1Ggra1862.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 974693..974942 -
Ggra1862.t1.CDS2Ggra1862.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 975023..975108 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1.exon1Ggra1862.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 974693..974942 -
Ggra1862.t1.exon2Ggra1862.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 975023..975108 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1.intron1Ggra1862.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 974943..975022 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1.start1Ggra1862.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 975106..975108 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1862.t1 ID=Ggra1862.t1|Name=Ggra1862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=112bp
MVQEIVEATEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTS
HPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQL
RKTVNELLEKL*
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spliced messenger RNA

>Ggra1862.t1 ID=Ggra1862.t1|Name=Ggra1862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00000050_pilon:974693..975108- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCAAGAAATCGTCGAAGCGACTGAATTCGAAAGCGCTACCAAGGA
AGCTGCGATCGTGGTTGTTGACTTCTACGCCGTTTGGTGTGGCCCGTGCA
GATTTATATCTCCAATCATAGAAGACATGGAATCTGAGTTGAAGACGTCG
CACCCCGGTAAGACGCTGTTCTACAAGGTGGACGTTGACAAGAATGTCGA
ACTGTCCGAGAAAATGGGTATCACAGCCATGCCCTCATTCCAAGTCTACT
TCAATGGAGAACTGCATCATACAGTAATCGGCGCAAACCACGAGCAACTT
CGCAAAACTGTCAATGAGCTTCTGGAGAAATTGTAG
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protein sequence of Ggra1862.t1

>Ggra1862.t1 ID=Ggra1862.t1|Name=Ggra1862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MVQEIVEATEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTS
HPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQL
RKTVNELLEKL*
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mRNA from alignment at tig00000050_pilon:974693..975108-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1862.t1 ID=Ggra1862.t1|Name=Ggra1862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp|location=Sequence derived from alignment at tig00000050_pilon:974693..975108- (Gracilaria gracilis GNS1m male)
ATGGTTCAAGAAATCGTCGAAGCGACTGAATTCGAAAGCGCTACCAAGGA
AGCTGCGATCGTGGTTGTTGACTTCTACGCCGTTTGGTAAGTTTCTCACT
GCTGTTCAGTTCAATCCATATCGTCTGCTTGGTACTGTTCGATTCTTACT
CTTTTTTTTTCATCAGGTGTGGCCCGTGCAGATTTATATCTCCAATCATA
GAAGACATGGAATCTGAGTTGAAGACGTCGCACCCCGGTAAGACGCTGTT
CTACAAGGTGGACGTTGACAAGAATGTCGAACTGTCCGAGAAAATGGGTA
TCACAGCCATGCCCTCATTCCAAGTCTACTTCAATGGAGAACTGCATCAT
ACAGTAATCGGCGCAAACCACGAGCAACTTCGCAAAACTGTCAATGAGCT
TCTGGAGAAATTGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:974693..975108-

>Ggra1862.t1 ID=Ggra1862.t1|Name=Ggra1862.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00000050_pilon:974693..975108- (Gracilaria gracilis GNS1m male)
ATGGTTCAAGAAATCGTCGAAGCGACTGAATTCGAAAGCGCTACCAAGGA
AGCTGCGATCGTGGTTGTTGACTTCTACGCCGTTTGGTGTGGCCCGTGCA
GATTTATATCTCCAATCATAGAAGACATGGAATCTGAGTTGAAGACGTCG
CACCCCGGTAAGACGCTGTTCTACAAGGTGGACGTTGACAAGAATGTCGA
ACTGTCCGAGAAAATGGGTATCACAGCCATGCCCTCATTCCAAGTCTACT
TCAATGGAGAACTGCATCATACAGTAATCGGCGCAAACCACGAGCAACTT
CGCAAAACTGTCAATGAGCTTCTGGAGAAATTGTAG
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