Ggra1798.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1798.t1
Unique NameGgra1798.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Homology
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A2V3IZF7 (60S ribosomal protein L9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZF7_9FLOR)

HSP 1 Score: 358 bits (919), Expect = 7.260e-125
Identity = 171/187 (91.44%), Postives = 182/187 (97.33%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKPSMDVRRVEDGRIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQE 187
            MKAVLSTEY+ VPDDVKV LK+RKVTVTGPRGTL R VKPSMDVRR+EDGRIRVDVWHGSRK+TAKINT+CSMIENMILGV+VGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRV MKGDVVCYRS+D+KDEL+VEGSDIELVSQCAAMVHHVCLVK+KDIRKFLDGIYVSHKGHIVQ+
Sbjct:    1 MKAVLSTEYVKVPDDVKVTLKARKVTVTGPRGTLQRTVKPSMDVRRIEDGRIRVDVWHGSRKETAKINTICSMIENMILGVTVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVQMKGDVVCYRSSDVKDELVVEGSDIELVSQCAAMVHHVCLVKRKDIRKFLDGIYVSHKGHIVQD 187          
BLAST of Ggra1798.t1 vs. uniprot
Match: R7QJN3 (60S ribosomal protein L9 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJN3_CHOCR)

HSP 1 Score: 343 bits (880), Expect = 6.410e-119
Identity = 165/186 (88.71%), Postives = 176/186 (94.62%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKPSMDVRRVEDGRIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQ 186
            MK+VLSTEYIDVP+ V+V LK+RKVTVTGPRGTL R VKP MDVRRVEDG+IRVDVWHGSRK+TAKINT+CSMIENMI G +VGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKR+RRV M GDVVCYRSTDIKDEL+VEGSDIELVSQCAAMVHHVCLVK+KDIRKFLDGIYVS KGHIVQ
Sbjct:    1 MKSVLSTEYIDVPEGVEVTLKARKVTVTGPRGTLERTVKPCMDVRRVEDGKIRVDVWHGSRKETAKINTICSMIENMITGTTVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRIRRVKMDGDVVCYRSTDIKDELVVEGSDIELVSQCAAMVHHVCLVKRKDIRKFLDGIYVSDKGHIVQ 186          
BLAST of Ggra1798.t1 vs. uniprot
Match: 60S ribosomal protein L9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13F0 (60S ribosomal protein L9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13F0)

HSP 1 Score: 298 bits (762), Expect = 6.600e-101
Identity = 140/186 (75.27%), Postives = 164/186 (88.17%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDGRIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIV 185
            M+ +LST Y++VP  V+V +K+R   VTGPRGTL R ++    D+R+VEDG++RVD+WHG+RKD AKINTVCS++ NMI+GV+ GFRYKLRFVYAHFPINVTC+DDKKS E+RNFLGEKRVR+V M GDVVCYRS D+KDELIVEGSD+E VSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIV
Sbjct:    1 MRTILSTAYVNVPAGVEVTIKARNFVVTGPRGTLTRLLRHIHADIRQVEDGKLRVDIWHGNRKDVAKINTVCSILRNMIIGVTRGFRYKLRFVYAHFPINVTCSDDKKSVEVRNFLGEKRVRKVTMTGDVVCYRSDDVKDELIVEGSDVEQVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIV 186          
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A7S3AAJ5 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAJ5_9RHOD)

HSP 1 Score: 233 bits (595), Expect = 1.680e-75
Identity = 119/189 (62.96%), Postives = 148/189 (78.31%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDG-RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQE 187
            MK VLST ++ +P+ V V +KSR+V VTGPRG+L R ++  ++ VR+VE G +IRVD+WHG RK  A +NT+ S I+N+I GV+ G+RYK+RFVYAHFPINV  ADDK+S EI NFLGEKRVR+V M  DV C R T  KDEL +EG+D++LVSQ AA+VH  CLVK KDIRKFLDGIYVS KGHI +E
Sbjct:    1 MKTVLSTGFLPLPEGVTVEVKSRRVEVTGPRGSLSRDMRHMNLQVRKVEGGEKIRVDIWHGKRKHVAAMNTILSTIQNLITGVTKGYRYKMRFVYAHFPINVNVADDKQSVEINNFLGEKRVRKVAMLKDVTCMR-TSTKDELALEGNDLQLVSQSAALVHQSCLVKNKDIRKFLDGIYVSEKGHIGEE 188          
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A1X6NR24 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NR24_PORUM)

HSP 1 Score: 231 bits (590), Expect = 1.030e-74
Identity = 114/186 (61.29%), Postives = 146/186 (78.49%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDG-RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHI 184
            M+++LS  Y+ VP+ V   +++RK+ V GPRGTL R V+  +M++ +V+DG R+R+DVWHG RK  A+INT  SMIEN+I GV+VG+RYKLRFVYAHFPIN +  +D K+ E+RNFLGEKRVRRV M   V CYRS  +KDELIVEG+D++ VSQ AA VH  CLV+ KDIRKFLDG+YVS KG+I
Sbjct:    1 MRSILSQAYVTVPEGVTCDVQARKIRVKGPRGTLSRVVRHLNMEMVKVDDGKRVRIDVWHGHRKQLAQINTAKSMIENLITGVTVGYRYKLRFVYAHFPINGSVTEDNKAVELRNFLGEKRVRRVEMLDGVTCYRSEKVKDELIVEGNDLDNVSQSAASVHQSCLVRHKDIRKFLDGVYVSEKGNI 186          
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A7S1THX5 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THX5_9RHOD)

HSP 1 Score: 228 bits (582), Expect = 1.880e-73
Identity = 115/190 (60.53%), Postives = 145/190 (76.32%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDG-----RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHI 184
            MK +L TE++D+PD V + +K+R V VTGPRGTL R ++   +++ RV DG     ++RVD+W G RK  A IN++CS + N+I GV+ G+++K+RFVYAHFPINVT ADD+K+ EIRNFLGEKRVR+VNM   V CYRS   KDELIVEG+D+  VSQ AA VH  CLVK+KDIR FLDGIYVS KGHI
Sbjct:    1 MKKILVTEFVDIPDGVSLEVKTRVVKVTGPRGTLTRNLQHLQLELSRVTDGETGANKLRVDLWGGRRKQIACINSLCSAVNNLITGVTKGYQFKMRFVYAHFPINVTVADDEKAVEIRNFLGEKRVRKVNMLDGVRCYRSETTKDELIVEGNDLNNVSQSAASVHQSCLVKEKDIRMFLDGIYVSEKGHI 190          
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A5J4YHJ6 (60S ribosomal protein L9-2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHJ6_PORPP)

HSP 1 Score: 223 bits (569), Expect = 1.460e-71
Identity = 112/187 (59.89%), Postives = 142/187 (75.94%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKPS-MDVRRVEDGRIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQ 186
            MK VL+TEYI +P  V+V + +R+V V GPRG L R ++ + +D+ R E+  +RVD+WH   K  A +N++CS I NMI+GV+ GF+YK+RFVYAHFPINV+  +   S EIRNFLGEKRVR V M   V CYRS DIKDEL++EG+DI +VSQ AA+VH  CLVKKKDIRKFLDGIYVS +G+I Q
Sbjct:    1 MKLVLTTEYITIPKGVEVKVNARQVAVKGPRGELSRDLRHAQVDISRPEENELRVDMWHAPSKVKAGMNSICSAIRNMIVGVTQGFQYKMRFVYAHFPINVS-VEGTNSVEIRNFLGEKRVRVVQMLDGVTCYRSDDIKDELVIEGNDINMVSQSAALVHQSCLVKKKDIRKFLDGIYVSARGNITQ 186          
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A388KVG3 (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KVG3_CHABU)

HSP 1 Score: 213 bits (542), Expect = 1.910e-67
Identity = 104/189 (55.03%), Postives = 141/189 (74.60%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDG-RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQE 187
            M+ + S++ +++P+ VK+ +K++KV VTGPRGTL+R  K  ++D+  +EDG R+RVD W G+RK  A I T C+ I N+  GV  G+RYK+RFVYAHFPIN    DD  S EIRNFLGEK+VR+V+M   V   RS  +KDE++V+GSD+ELVS+  A+++ VC VK+KDIRKFLDGIYVS KG I +E
Sbjct:    1 MRLIRSSQTLEIPEGVKLEIKAKKVRVTGPRGTLYRDFKHLNLDLAIIEDGKRLRVDAWFGNRKTIASIRTCCTHINNLFTGVLKGYRYKMRFVYAHFPINAVIGDDSTSIEIRNFLGEKKVRKVSMLPGVTITRSEKVKDEIVVDGSDVELVSRSCALINQVCHVKEKDIRKFLDGIYVSEKGTIAEE 189          
BLAST of Ggra1798.t1 vs. uniprot
Match: A0A176WLA8 (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WLA8_MARPO)

HSP 1 Score: 213 bits (542), Expect = 2.100e-67
Identity = 106/191 (55.50%), Postives = 141/191 (73.82%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDG---RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQE 187
            MK +LS++ +D+P DVK  +K++++ V GPRG L R  K  ++D + ++DG   +++VD W GSRK TA I T  S I N+I GV+ G+RYK+RFVYAHFPIN + +++K S EIRNFLGEK+VRRV M  DV   RS  +KDEL++EG+DIELVS+  A+++  C VKKKDIRKFLDGIYVS KG I  E
Sbjct:    1 MKVILSSQTMDIPKDVKFEIKAKQIRVKGPRGVLTRDFKHLNLDFQMIQDGEDKKLKVDAWFGSRKTTAAIRTAVSHINNLITGVTKGYRYKMRFVYAHFPINASISNEKDSIEIRNFLGEKKVRRVEMLDDVTVTRSEKVKDELVLEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGSIADE 191          
BLAST of Ggra1798.t1 vs. uniprot
Match: 60S ribosomal protein L9 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A54D7 (60S ribosomal protein L9 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A54D7)

HSP 1 Score: 213 bits (541), Expect = 2.710e-67
Identity = 106/186 (56.99%), Postives = 137/186 (73.66%), Query Frame = 0
Query:    1 MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKP-SMDVRRVEDGRIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINVTCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIELVSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIV 185
            MK  L+++ +++PDDV+V LKSR VTV GPRGTL R  +   +++ +V   +IRVDVW  SRK+ A + T+ S IENMI GV  GFRYK+R VYAHFPIN+T  +D K  EIRNFLGEK +RRV M+  V CY S  +KDE+ ++G+D+ELVS  AA++H   LVK+KDIRKFLDGIYVS K  +V
Sbjct:    1 MKTTLASQTVEIPDDVQVFLKSRVVTVKGPRGTLKRNFRHLRLELTKVGKNKIRVDVWFASRKELACVKTIVSHIENMIKGVIYGFRYKMRSVYAHFPINITIQEDGKLVEIRNFLGEKIIRRVRMRDGVSCYNSPGVKDEITLDGNDLELVSNSAALIHQSTLVKRKDIRKFLDGIYVSEKTTVV 186          
The following BLAST results are available for this feature:
BLAST of Ggra1798.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZF77.260e-12591.4460S ribosomal protein L9 n=1 Tax=Gracilariopsis ch... [more]
R7QJN36.410e-11988.7160S ribosomal protein L9 n=1 Tax=Chondrus crispus ... [more]
60S ribosomal protein L9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13F06.600e-10175.2760S ribosomal protein L9-like n=1 Tax=Mercenaria m... [more]
A0A7S3AAJ51.680e-7562.96Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NR241.030e-7461.29Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1THX51.880e-7360.53Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A5J4YHJ61.460e-7159.8960S ribosomal protein L9-2 n=1 Tax=Porphyridium pu... [more]
A0A388KVG31.910e-6755.03Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A176WLA82.100e-6755.50Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
60S ribosomal protein L9 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A54D72.710e-6756.9960S ribosomal protein L9 n=1 Tax=Exaiptasia diapha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 97..175
e-value: 1.7E-7
score: 31.8
coord: 12..84
e-value: 2.4E-15
score: 57.0
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 1..84
e-value: 2.5E-24
score: 87.6
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 85..188
e-value: 7.8E-43
score: 146.7
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 2..84
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 85..181
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 1..184
e-value: 2.2E-30
score: 103.4
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..186
NoneNo IPR availablePANTHERPTHR11655:SF1660S RIBOSOMAL PROTEIN L9-RELATEDcoord: 1..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:654404..655296 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1Ggra1798.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 654404..655296 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1798.t1 ID=Ggra1798.t1|Name=Ggra1798.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKPSMDVRRVEDG
RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINV
TCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIEL
VSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQEVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020040Ribosomal_L6_a/b-dom
IPR036789Ribosomal_L6_a/b-dom_sf
IPR000702Ribosomal_L6