Ggra1798.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1798.t1
Unique NameGgra1798.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:654404..655296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA21281
Preferred nameRPL9
PFAMsRibosomal_L6
Max annot lvl2759|Eukaryota
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003002,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007389,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009719,GO:0009892,GO:0009941,GO:0009955,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904
Evalue2.5e-68
EggNOG OGsCOG0097@1|root,KOG3255@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1798Ggra1798Gracilaria gracilis GNS1m malegenetig00000050_pilon 654404..655296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1Ggra1798.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 654404..655296 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1.stop1Ggra1798.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 654404..654406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1.CDS1Ggra1798.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 654404..654927 -
Ggra1798.t1.CDS2Ggra1798.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 655251..655296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1.exon1Ggra1798.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 654404..654927 -
Ggra1798.t1.exon2Ggra1798.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 655251..655296 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1.intron1Ggra1798.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 654928..655250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1798.t1.start1Ggra1798.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 655294..655296 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1798.t1 ID=Ggra1798.t1|Name=Ggra1798.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKPSMDVRRVEDG
RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINV
TCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIEL
VSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQEVV*
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spliced messenger RNA

>Ggra1798.t1 ID=Ggra1798.t1|Name=Ggra1798.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000050_pilon:654404..655296- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCTGTACTCTCTACCGAGTATATCGATGTTCCTGATGACGTAAA
AGTGGTGTTGAAATCGCGCAAGGTGACTGTCACAGGCCCGCGCGGAACGC
TTCACCGAGCAGTCAAGCCATCCATGGACGTACGTCGTGTTGAAGATGGT
AGAATTCGCGTTGATGTGTGGCACGGATCACGCAAGGATACCGCCAAGAT
CAACACCGTCTGTTCAATGATTGAGAACATGATTCTTGGTGTTTCCGTCG
GATTCCGTTACAAGCTTCGATTTGTGTATGCTCATTTCCCCATCAACGTT
ACATGTGCTGATGATAAGAAATCATGCGAGATTAGAAACTTTTTGGGAGA
GAAGCGTGTTCGTCGTGTTAACATGAAGGGAGATGTTGTTTGCTACAGAT
CGACTGATATTAAGGATGAGCTGATTGTTGAGGGCTCTGACATTGAACTC
GTGTCCCAATGTGCGGCCATGGTTCATCACGTATGCCTCGTGAAGAAGAA
GGATATCCGCAAGTTCCTTGATGGCATTTACGTGTCTCACAAGGGTCACA
TTGTTCAAGAAGTTGTTTAA
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protein sequence of Ggra1798.t1

>Ggra1798.t1 ID=Ggra1798.t1|Name=Ggra1798.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MKAVLSTEYIDVPDDVKVVLKSRKVTVTGPRGTLHRAVKPSMDVRRVEDG
RIRVDVWHGSRKDTAKINTVCSMIENMILGVSVGFRYKLRFVYAHFPINV
TCADDKKSCEIRNFLGEKRVRRVNMKGDVVCYRSTDIKDELIVEGSDIEL
VSQCAAMVHHVCLVKKKDIRKFLDGIYVSHKGHIVQEVV*
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mRNA from alignment at tig00000050_pilon:654404..655296-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1798.t1 ID=Ggra1798.t1|Name=Ggra1798.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=893bp|location=Sequence derived from alignment at tig00000050_pilon:654404..655296- (Gracilaria gracilis GNS1m male)
ATGAAGGCTGTACTCTCTACCGAGTATATCGATGTTCCTGATGACGGTAA
GTTCTCAAATCTTTTTCATCACGCGTATATCGCTTGTGCGATCCATCTTC
CGCTCGGGTCATATCCACATTTGCACCAAAATGTGTTGCGACGGGAGTTT
TGAGGGGCGACGACAAACAGTTTAATTCGTACTATGCCGCGATTCTGTGG
CGGAGCCTGAGGGATCCCATCTACATGCGAGTCGTATCCAGTGCGATGAA
GTGCTTCGGATCGATCAAGCTGCGATGCCATTTCATTGTTGAGCGCACTA
TGTCCCAAATCACATACGATCATGGCATTTAACTGACGTCTTGCTCCTCA
ATTGCGTTAACGAACACAGTAAAAGTGGTGTTGAAATCGCGCAAGGTGAC
TGTCACAGGCCCGCGCGGAACGCTTCACCGAGCAGTCAAGCCATCCATGG
ACGTACGTCGTGTTGAAGATGGTAGAATTCGCGTTGATGTGTGGCACGGA
TCACGCAAGGATACCGCCAAGATCAACACCGTCTGTTCAATGATTGAGAA
CATGATTCTTGGTGTTTCCGTCGGATTCCGTTACAAGCTTCGATTTGTGT
ATGCTCATTTCCCCATCAACGTTACATGTGCTGATGATAAGAAATCATGC
GAGATTAGAAACTTTTTGGGAGAGAAGCGTGTTCGTCGTGTTAACATGAA
GGGAGATGTTGTTTGCTACAGATCGACTGATATTAAGGATGAGCTGATTG
TTGAGGGCTCTGACATTGAACTCGTGTCCCAATGTGCGGCCATGGTTCAT
CACGTATGCCTCGTGAAGAAGAAGGATATCCGCAAGTTCCTTGATGGCAT
TTACGTGTCTCACAAGGGTCACATTGTTCAAGAAGTTGTTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:654404..655296-

>Ggra1798.t1 ID=Ggra1798.t1|Name=Ggra1798.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000050_pilon:654404..655296- (Gracilaria gracilis GNS1m male)
ATGAAGGCTGTACTCTCTACCGAGTATATCGATGTTCCTGATGACGTAAA
AGTGGTGTTGAAATCGCGCAAGGTGACTGTCACAGGCCCGCGCGGAACGC
TTCACCGAGCAGTCAAGCCATCCATGGACGTACGTCGTGTTGAAGATGGT
AGAATTCGCGTTGATGTGTGGCACGGATCACGCAAGGATACCGCCAAGAT
CAACACCGTCTGTTCAATGATTGAGAACATGATTCTTGGTGTTTCCGTCG
GATTCCGTTACAAGCTTCGATTTGTGTATGCTCATTTCCCCATCAACGTT
ACATGTGCTGATGATAAGAAATCATGCGAGATTAGAAACTTTTTGGGAGA
GAAGCGTGTTCGTCGTGTTAACATGAAGGGAGATGTTGTTTGCTACAGAT
CGACTGATATTAAGGATGAGCTGATTGTTGAGGGCTCTGACATTGAACTC
GTGTCCCAATGTGCGGCCATGGTTCATCACGTATGCCTCGTGAAGAAGAA
GGATATCCGCAAGTTCCTTGATGGCATTTACGTGTCTCACAAGGGTCACA
TTGTTCAAGAAGTTGTTTAA
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