Ggra1859.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1859.t1
Unique NameGgra1859.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:966977..968179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005651123.1
PFAMsPA,zf-RING_2
Max annot lvl33090|Viridiplantae
KEGG koko:K15692
GOsGO:0000139,GO:0000209,GO:0000322,GO:0000325,GO:0000326,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0031090,GO:0031984,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:1901564
Evalue7.54e-10
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,37QFZ@33090|Viridiplantae
EC2.3.2.27
DescriptionReceptor homology region, transmembrane domain- and RING domain-containing protein
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1859Ggra1859Gracilaria gracilis GNS1m malegenetig00000050_pilon 966977..968179 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1859.t1.start1Ggra1859.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 966977..966979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1859.t1.CDS1Ggra1859.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 966977..968179 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1859.t1.exon1Ggra1859.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 966977..968179 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1859.t1.stop1Ggra1859.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 968177..968179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1859.t1Ggra1859.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 966977..968179 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1859.t1 ID=Ggra1859.t1|Name=Ggra1859.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MNSTSQLSLTPPRVEPTTDRRGERDARNAPPPLFQAFANARASSSAARAR
RVPQYVALATLAVVFVCALYFAIANWRGIDRQTNADSRWRPFTCNVTEDV
QATPLEGSESRYRVFADVQFRSDEDERRAFYGRRSTSFTKNDAEKIKNDL
NEQREKNNNTLPCFLRDNVMDPSEISLAEITSSSSVYLAWAGTFMAAVIG
VILITVCSSSAGSSMGVSALTPMALASPPVAKSVHLTERQAERICARFSD
RVPRSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQW
LWKGKGLCPLCKWDARKFIAAEKQAGLDGEWDSATTTAASSAVADGSAPL
SQSSLALAPSQSPPPPPPPPAVAAVAQTQNVSHVSIDVDQLPDGNGGARR
*
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spliced messenger RNA

>Ggra1859.t1 ID=Ggra1859.t1|Name=Ggra1859.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000050_pilon:966977..968179+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCACATCGCAACTTTCTCTCACCCCCCCGCGCGTCGAGCCCAC
AACCGACCGCCGTGGTGAGCGCGACGCGCGCAATGCCCCACCACCGCTAT
TCCAAGCGTTTGCGAAcgcgcgcgcgtcgtcctctgccgcgcgcgcgcgc
cgcgtgccgcAGTACGTAGCGCTGGCCACGCTGGCGGTCGTCTTCGTGTG
CGCCTTGTACTTTGCCATTGCCAATTGGCGCGGGATAGACCGTCAAACCA
ACGCCGACTCCCGCTGGCGACCGTTCACTTGCAACGTCACGGAAGACGTG
CAGGCCACGCCTTTGGAAGGCAGTGAATCGCGCTACCGTGTGTTTGCCGA
CGTGCAGTTCCGCAGTGACGAAGACGAACGCAGGGCGTTTTACGGCCGCA
GAAGCACCAGCTTCACCAAGAATGATGCGGAGAAAATCAAGAACGACCTC
AATGAACAGCGCGAGAAGAACAATAACACCCTACCGTGCTTCCTGCGAGA
CAACGTGATGGACCCATCGGAGATCTCGCTGGCGGAAATTACATCGTCGT
CGTCCGTGTACCTGGCATGGGCCGGCACGTTCATGGCCGCCGTCATCGGT
GTCATCCTCATCACGGTTTGTTCCAGCTCCGCAGGCTCCTCCATGGGCGT
TTCCGCGCTCACGCCCATGGCACTGGCATCACCGCCAGTGGCCAAGAGCG
TACACCTCACCGAACGGCAAGCAGAGCGCATCTGCGCTCGCTTCAGCGAC
CGCGTCCCCCGCAGCGCGGTGCACGACTGGACGTGCGCCATCTGTCTGGA
GGAGGACGAAGACGGCGAGAACGCGCCCTCGCACGACATGCTGCACACCA
CCGTACTGCCGTGCGGGCACCGCTTTCATGGCGCGTGCATCAAGCAGTGG
CTGTGGAAGGGCAAGGGACTGTGCCCGCTCTGCAAGTGGGACGCGCGAAA
GTTCATCGCCGCGGAGAAGCAGGCCGGCTTGGACGGCGAGTGGGACAGCG
CCACCACCACGGCTGCGTCGTCGGCTGTGGCGGACGGCAGCGcgccgctg
tcgcagagcagcctggcgctggcgccgtcgcagtcacctccgccgccgcc
accgccaccggcgGTGGCCGCTGTTGCACAGACGCAGAACGTGAGCCATG
TTTCTATCGACGTTGACCAGCTGCCGGACGGCAACGGCGGCGCGCGGCGG
TGA
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protein sequence of Ggra1859.t1

>Ggra1859.t1 ID=Ggra1859.t1|Name=Ggra1859.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MNSTSQLSLTPPRVEPTTDRRGERDARNAPPPLFQAFANARASSSAARAR
RVPQYVALATLAVVFVCALYFAIANWRGIDRQTNADSRWRPFTCNVTEDV
QATPLEGSESRYRVFADVQFRSDEDERRAFYGRRSTSFTKNDAEKIKNDL
NEQREKNNNTLPCFLRDNVMDPSEISLAEITSSSSVYLAWAGTFMAAVIG
VILITVCSSSAGSSMGVSALTPMALASPPVAKSVHLTERQAERICARFSD
RVPRSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQW
LWKGKGLCPLCKWDARKFIAAEKQAGLDGEWDSATTTAASSAVADGSAPL
SQSSLALAPSQSPPPPPPPPAVAAVAQTQNVSHVSIDVDQLPDGNGGARR
*
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mRNA from alignment at tig00000050_pilon:966977..968179+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1859.t1 ID=Ggra1859.t1|Name=Ggra1859.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000050_pilon:966977..968179+ (Gracilaria gracilis GNS1m male)
ATGAACTCCACATCGCAACTTTCTCTCACCCCCCCGCGCGTCGAGCCCAC
AACCGACCGCCGTGGTGAGCGCGACGCGCGCAATGCCCCACCACCGCTAT
TCCAAGCGTTTGCGAAcgcgcgcgcgtcgtcctctgccgcgcgcgcgcgc
cgcgtgccgcAGTACGTAGCGCTGGCCACGCTGGCGGTCGTCTTCGTGTG
CGCCTTGTACTTTGCCATTGCCAATTGGCGCGGGATAGACCGTCAAACCA
ACGCCGACTCCCGCTGGCGACCGTTCACTTGCAACGTCACGGAAGACGTG
CAGGCCACGCCTTTGGAAGGCAGTGAATCGCGCTACCGTGTGTTTGCCGA
CGTGCAGTTCCGCAGTGACGAAGACGAACGCAGGGCGTTTTACGGCCGCA
GAAGCACCAGCTTCACCAAGAATGATGCGGAGAAAATCAAGAACGACCTC
AATGAACAGCGCGAGAAGAACAATAACACCCTACCGTGCTTCCTGCGAGA
CAACGTGATGGACCCATCGGAGATCTCGCTGGCGGAAATTACATCGTCGT
CGTCCGTGTACCTGGCATGGGCCGGCACGTTCATGGCCGCCGTCATCGGT
GTCATCCTCATCACGGTTTGTTCCAGCTCCGCAGGCTCCTCCATGGGCGT
TTCCGCGCTCACGCCCATGGCACTGGCATCACCGCCAGTGGCCAAGAGCG
TACACCTCACCGAACGGCAAGCAGAGCGCATCTGCGCTCGCTTCAGCGAC
CGCGTCCCCCGCAGCGCGGTGCACGACTGGACGTGCGCCATCTGTCTGGA
GGAGGACGAAGACGGCGAGAACGCGCCCTCGCACGACATGCTGCACACCA
CCGTACTGCCGTGCGGGCACCGCTTTCATGGCGCGTGCATCAAGCAGTGG
CTGTGGAAGGGCAAGGGACTGTGCCCGCTCTGCAAGTGGGACGCGCGAAA
GTTCATCGCCGCGGAGAAGCAGGCCGGCTTGGACGGCGAGTGGGACAGCG
CCACCACCACGGCTGCGTCGTCGGCTGTGGCGGACGGCAGCGcgccgctg
tcgcagagcagcctggcgctggcgccgtcgcagtcacctccgccgccgcc
accgccaccggcgGTGGCCGCTGTTGCACAGACGCAGAACGTGAGCCATG
TTTCTATCGACGTTGACCAGCTGCCGGACGGCAACGGCGGCGCGCGGCGG
TGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:966977..968179+

>Ggra1859.t1 ID=Ggra1859.t1|Name=Ggra1859.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000050_pilon:966977..968179+ (Gracilaria gracilis GNS1m male)
ATGAACTCCACATCGCAACTTTCTCTCACCCCCCCGCGCGTCGAGCCCAC
AACCGACCGCCGTGGTGAGCGCGACGCGCGCAATGCCCCACCACCGCTAT
TCCAAGCGTTTGCGAAcgcgcgcgcgtcgtcctctgccgcgcgcgcgcgc
cgcgtgccgcAGTACGTAGCGCTGGCCACGCTGGCGGTCGTCTTCGTGTG
CGCCTTGTACTTTGCCATTGCCAATTGGCGCGGGATAGACCGTCAAACCA
ACGCCGACTCCCGCTGGCGACCGTTCACTTGCAACGTCACGGAAGACGTG
CAGGCCACGCCTTTGGAAGGCAGTGAATCGCGCTACCGTGTGTTTGCCGA
CGTGCAGTTCCGCAGTGACGAAGACGAACGCAGGGCGTTTTACGGCCGCA
GAAGCACCAGCTTCACCAAGAATGATGCGGAGAAAATCAAGAACGACCTC
AATGAACAGCGCGAGAAGAACAATAACACCCTACCGTGCTTCCTGCGAGA
CAACGTGATGGACCCATCGGAGATCTCGCTGGCGGAAATTACATCGTCGT
CGTCCGTGTACCTGGCATGGGCCGGCACGTTCATGGCCGCCGTCATCGGT
GTCATCCTCATCACGGTTTGTTCCAGCTCCGCAGGCTCCTCCATGGGCGT
TTCCGCGCTCACGCCCATGGCACTGGCATCACCGCCAGTGGCCAAGAGCG
TACACCTCACCGAACGGCAAGCAGAGCGCATCTGCGCTCGCTTCAGCGAC
CGCGTCCCCCGCAGCGCGGTGCACGACTGGACGTGCGCCATCTGTCTGGA
GGAGGACGAAGACGGCGAGAACGCGCCCTCGCACGACATGCTGCACACCA
CCGTACTGCCGTGCGGGCACCGCTTTCATGGCGCGTGCATCAAGCAGTGG
CTGTGGAAGGGCAAGGGACTGTGCCCGCTCTGCAAGTGGGACGCGCGAAA
GTTCATCGCCGCGGAGAAGCAGGCCGGCTTGGACGGCGAGTGGGACAGCG
CCACCACCACGGCTGCGTCGTCGGCTGTGGCGGACGGCAGCGcgccgctg
tcgcagagcagcctggcgctggcgccgtcgcagtcacctccgccgccgcc
accgccaccggcgGTGGCCGCTGTTGCACAGACGCAGAACGTGAGCCATG
TTTCTATCGACGTTGACCAGCTGCCGGACGGCAACGGCGGCGCGCGGCGG
TGA
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