Ggra1859.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1859.t1
Unique NameGgra1859.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Homology
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A2V3ISL3 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL3_9FLOR)

HSP 1 Score: 251 bits (641), Expect = 4.530e-76
Identity = 153/356 (42.98%), Postives = 207/356 (58.15%), Query Frame = 0
Query:   50 RRVPQYVALATLAVVFVCALYFAIANWRGIDRQTNADSRWRPFTCNVTEDVQATPLEGSESRYRVFADVQFRSDEDE-RRAFYGRRSTSF---TKNDAEKIKNDLNEQREKNNNTLPCFLRDNVMDPSEISLAEITSSSSVYLAWAGTFMAAVIGVILITVCSSSAGSSMGVSALTPMALASPPVAKSVHLTERQAERICARFSDRV-PRSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDARKFIAAEKQAGLDGEWDSA--TTTAASSAVADGSAPLSQSSLALXXXXXXXXXXXXXXXXXXAQTQNVSHVSIDVDQLPDGNGGA 398
            R  P Y+ALATL V+F+C+LYFAI NWRGI+R     + W+   C V   VQ          +RVF +V       +  +A+YG   +     ++ +A+K  N LNEQ  +    L C++ D   D  ++SL  IT+S+SVYLAW GTF+AAV+GV++ITV S+S    +GVS L    + +PPVAKSVHLTERQA RIC +F+  +  +S   DWTC+ICL++D       S D++ T VLPC HRFH  CIK+WLWKGKG CPLCKWDARKFI  EK+A  +    +A  TT AA+ +   GS+ +      L                    +Q+VSH++ID   L   + GA
Sbjct:   47 RSCPHYIALATLVVIFICSLYFAITNWRGIERDAATPNVWKKRKCTVKSKVQTERKRPLSEFHRVFVNVTVSGRVSKVTKAYYGPSESKLPDLSEEEAQKRANQLNEQI-RIGTELNCWVADADSDNPKVSLTAITTSASVYLAWTGTFLAAVVGVVIITVFSNSTHGPLGVSYLREPLVMAPPVAKSVHLTERQALRICNKFAQDIRAQSCDADWTCSICLDDDY------STDLIKTVVLPCDHRFHTLCIKRWLWKGKGECPLCKWDARKFIDKEKKADRERFASAAEFTTEAATDSSTYGSSGMLHE---LGTQRNPPAAAQPSSNGGANASQDVSHITIDTVMLETASNGA 392          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A7S3CAZ3 (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CAZ3_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.280e-9
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 0
Query:  240 QAERICARFSDRVPRSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDARKFIAAEKQAG 326
            + ER+C   S+          TCAICL+E E+G+            LPCGHRFH  CI +WL +   +CPLCK+D  + +   ++ G
Sbjct:   51 EGERVCGDSSNE---------TCAICLDEYEEGDGLRE--------LPCGHRFHVDCIDEWLTRVNSVCPLCKYDVGRHVRKSREGG 120          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A5B8N0M7 (RING-type domain-containing protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0M7_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-8
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 0
Query:  261 TCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDARKFI 319
            TCAIC+EE EDG+            LPCGHRFH +CI +WL K   +CPLCK+D  K +
Sbjct:  302 TCAICIEEYEDGDRLRE--------LPCGHRFHISCIDEWLTKVNSVCPLCKFDIGKHV 352          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A7J8LGQ1 (RING-type domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8LGQ1_9ROSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.860e-8
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 0
Query:  254 RSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWD-ARKFIAAE 322
            RS++   TCAICLE+  DGE           VLPC H FH +C++ WL K    CP+CK D   KF  +E
Sbjct:   14 RSSIAGETCAICLEDYNDGELLK--------VLPCQHDFHSSCVESWLTKWGTFCPVCKLDMTTKFAFSE 75          
BLAST of Ggra1859.t1 vs. uniprot
Match: E3 ubiquitin-protein ligase RNF13-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91DC3D (E3 ubiquitin-protein ligase RNF13-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91DC3D)

HSP 1 Score: 65.1 bits (157), Expect = 9.040e-8
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0
Query:  243 RICARFSDRVP----RSAVHDW-TCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDARKFIAAEKQAGLDGEWDSATT 336
            R+  R  D +P      AVH + TCAICL++ EDGE           +LPC H +H  C+  WL + + +CP+CK   R  +A + +AG   + D+A T
Sbjct:  209 RLPKRVLDALPVVKFDKAVHTYDTCAICLDDYEDGEQL--------RILPCNHAYHTKCVDPWLTRSRRVCPVCKQRVR--LAGDPEAGAGSDSDTANT 297          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A6A4VGQ5 (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VGQ5_AMPAM)

HSP 1 Score: 65.1 bits (157), Expect = 1.140e-7
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0
Query:  243 RICARFSDRVP----RSAVHDW-TCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDARKFIAAEKQAGLDGEWDSATT 336
            R+  R  D +P      AVH + TCAICL++ EDGE           +LPC H +H  C+  WL + + +CP+CK   R  +A + +AG   + D+A T
Sbjct:  209 RLPKRVLDALPVVKFDKAVHTYDTCAICLDDYEDGEQL--------RILPCNHAYHTKCVDPWLTRSRRVCPVCKQRVR--LAGDPEAGAGSDSDTANT 297          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A5D2LKW5 (RING-type domain-containing protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A5D2LKW5_GOSTO)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-7
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 0
Query:  254 RSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWD-ARKFIAAEKQAG 326
            RS++   TCAICLE+  DGE           VLPC H FH +C++ WL K    CP+CK D   KF  +E + G
Sbjct:  142 RSSIAGETCAICLEDYNDGELLK--------VLPCQHDFHSSCVESWLTKWGTFCPVCKLDMTTKFAFSEIKRG 207          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A5D2VIB6 (RING-type domain-containing protein n=1 Tax=Gossypium mustelinum TaxID=34275 RepID=A0A5D2VIB6_GOSMU)

HSP 1 Score: 61.2 bits (147), Expect = 3.200e-7
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 0
Query:  254 RSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWD-ARKFIAAEKQAG 326
            RS++   TCAICLE+  DGE           VLPC H FH +C++ WL K    CP+CK D   KF  +E + G
Sbjct:  147 RSSIAGETCAICLEDYNDGELLK--------VLPCQHDFHSSCVESWLTKWGTFCPVCKLDMTTKFAFSEIKRG 212          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A150H1R6 (RING-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H1R6_GONPE)

HSP 1 Score: 63.5 bits (153), Expect = 3.200e-7
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 0
Query:  261 TCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDARKFIAAEKQ 324
            TCAICLE  E+GE           VLPC HRFH +CI QWL  G+  CPLCK DA + +   +Q
Sbjct:  342 TCAICLENYEEGEKI--------RVLPCAHRFHMSCIDQWL-GGRRFCPLCKHDAAQPLPLPEQ 396          
BLAST of Ggra1859.t1 vs. uniprot
Match: A0A059LSD0 (RING-type domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LSD0_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 3.990e-7
Identity = 31/56 (55.36%), Postives = 33/56 (58.93%), Query Frame = 0
Query:  261 TCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQWLWKGKGLCPLCKWDAR 316
            TC +CL+   DG      D L   VLPC HRFH ACI QWL     LCPLCK DAR
Sbjct:  349 TCVVCLDNYRDG------DALR--VLPCAHRFHAACIDQWLTSRPPLCPLCKADAR 396          
The following BLAST results are available for this feature:
BLAST of Ggra1859.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISL34.530e-7642.98RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A7S3CAZ31.280e-936.78Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A5B8N0M71.390e-850.85RING-type domain-containing protein n=3 Tax=Chloro... [more]
A0A7J8LGQ13.860e-844.29RING-type domain-containing protein n=2 Tax=Gossyp... [more]
E3 ubiquitin-protein ligase RNF13-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91DC3D9.040e-836.36E3 ubiquitin-protein ligase RNF13-like n=2 Tax=Amp... [more]
A0A6A4VGQ51.140e-736.36E3 ubiquitin-protein ligase RNF13 n=1 Tax=Amphibal... [more]
A0A5D2LKW52.980e-743.24RING-type domain-containing protein n=3 Tax=Gossyp... [more]
A0A5D2VIB63.200e-743.24RING-type domain-containing protein n=1 Tax=Gossyp... [more]
A0A150H1R63.200e-750.00RING-type domain-containing protein n=1 Tax=Gonium... [more]
A0A059LSD03.990e-755.36RING-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 140..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..400
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..358
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..373
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 119..315
NoneNo IPR availablePANTHERPTHR22765:SF332ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 119..315
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 207..400
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..73
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 74..186
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 187..206
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 261..312
e-value: 6.41722E-15
score: 66.5565
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 256..315
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 262..311
e-value: 4.3E-10
score: 49.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 261..312
e-value: 2.0E-9
score: 37.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 262..312
score: 12.371254
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 249..326
e-value: 4.0E-14
score: 53.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:966977..968179 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1859.t1Ggra1859.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 966977..968179 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1859.t1 ID=Ggra1859.t1|Name=Ggra1859.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MNSTSQLSLTPPRVEPTTDRRGERDARNAPPPLFQAFANARASSSAARAR
RVPQYVALATLAVVFVCALYFAIANWRGIDRQTNADSRWRPFTCNVTEDV
QATPLEGSESRYRVFADVQFRSDEDERRAFYGRRSTSFTKNDAEKIKNDL
NEQREKNNNTLPCFLRDNVMDPSEISLAEITSSSSVYLAWAGTFMAAVIG
VILITVCSSSAGSSMGVSALTPMALASPPVAKSVHLTERQAERICARFSD
RVPRSAVHDWTCAICLEEDEDGENAPSHDMLHTTVLPCGHRFHGACIKQW
LWKGKGLCPLCKWDARKFIAAEKQAGLDGEWDSATTTAASSAVADGSAPL
SQSSLALAPSQSPPPPPPPPAVAAVAQTQNVSHVSIDVDQLPDGNGGARR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD