Ggra1863.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1863.t1
Unique NameGgra1863.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:977708..978275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123320.KB889673_gene3660
Max annot lvl201174|Actinobacteria
Evalue2.71e-06
EggNOG OGsCOG1520@1|root,COG1520@2|Bacteria,2IP7S@201174|Actinobacteria
DescriptionPart of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1863Ggra1863Gracilaria gracilis GNS1m malegenetig00000050_pilon 977708..978275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1863.t1Ggra1863.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 977708..978275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1863.t1.stop1Ggra1863.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 977708..977710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1863.t1.CDS1Ggra1863.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 977708..977970 -
Ggra1863.t1.CDS2Ggra1863.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 978080..978275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1863.t1.exon1Ggra1863.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 977708..977970 -
Ggra1863.t1.exon2Ggra1863.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 978080..978275 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1863.t1.intron1Ggra1863.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 977971..978079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1863.t1.start1Ggra1863.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 978273..978275 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1863.t1 ID=Ggra1863.t1|Name=Ggra1863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=153bp
MILSRGLENGYSKAEFHKDLREFIEPQLATIPNLRVVNPVDIASSKAKNP
EHDEEFTKAKKAHGGESNEWSAKGEVYWCTAASSDEESKKVEYQSKTFNV
DKGNTKQFPDNAYIFNGYVDTALTWEVECWEEDNERVRDKMDSLLSDISD
AY*
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spliced messenger RNA

>Ggra1863.t1 ID=Ggra1863.t1|Name=Ggra1863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00000050_pilon:977708..978275- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACTGAGTCGCGGTCTTGAAAACGGTTACTCGAAGGCCGAATTTCA
CAAAGACCTCCGTGAATTCATCGAGCCACAACTGGCTACAATTCCCAACC
TCCGCGTAGTTAACCCGGTCGACATCGCATCCAGCAAAGCGAAAAACCCT
GAGCATGACGAGGAGTTCACCAAGGCAAAGAAGGCACATGGCGGAGAGTC
GAATGAATGGAGTGCCAAGGGCGAAGTGTACTGGTGCACTGCCGCGTCTA
GCGATGAAGAGTCGAAGAAGGTGGAATATCAATCCAAGACGTTCAATGTG
GACAAGGGAAATACAAAACAGTTTCCTGATAACGCGTACATCTTTAACGG
ATATGTGGACACAGCGCTGACGTGGGAGGTGGAATGCTGGGAGGAAGATA
ATGAACGTGTGCGCGACAAGATGGACAGTCTTTTGAGTGACATTAGCGAC
GCTTATTGA
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protein sequence of Ggra1863.t1

>Ggra1863.t1 ID=Ggra1863.t1|Name=Ggra1863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MILSRGLENGYSKAEFHKDLREFIEPQLATIPNLRVVNPVDIASSKAKNP
EHDEEFTKAKKAHGGESNEWSAKGEVYWCTAASSDEESKKVEYQSKTFNV
DKGNTKQFPDNAYIFNGYVDTALTWEVECWEEDNERVRDKMDSLLSDISD
AY*
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mRNA from alignment at tig00000050_pilon:977708..978275-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1863.t1 ID=Ggra1863.t1|Name=Ggra1863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=568bp|location=Sequence derived from alignment at tig00000050_pilon:977708..978275- (Gracilaria gracilis GNS1m male)
ATGATACTGAGTCGCGGTCTTGAAAACGGTTACTCGAAGGCCGAATTTCA
CAAAGACCTCCGTGAATTCATCGAGCCACAACTGGCTACAATTCCCAACC
TCCGCGTAGTTAACCCGGTCGACATCGCATCCAGCAAAGCGAAAAACCCT
GAGCATGACGAGGAGTTCACCAAGGCAAAGAAGGCACATGGCGGAGGTGT
GGTGGTGCTCTTCTCGCCAAAGAGCAAAGAGAGCGCCGAAAGGGGTGCAA
TAACGCTCCCAGACAAAATATACTTTGAAGATGACAAAGTTCAAGTGTCT
GTCAGAGTCGAATGAATGGAGTGCCAAGGGCGAAGTGTACTGGTGCACTG
CCGCGTCTAGCGATGAAGAGTCGAAGAAGGTGGAATATCAATCCAAGACG
TTCAATGTGGACAAGGGAAATACAAAACAGTTTCCTGATAACGCGTACAT
CTTTAACGGATATGTGGACACAGCGCTGACGTGGGAGGTGGAATGCTGGG
AGGAAGATAATGAACGTGTGCGCGACAAGATGGACAGTCTTTTGAGTGAC
ATTAGCGACGCTTATTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:977708..978275-

>Ggra1863.t1 ID=Ggra1863.t1|Name=Ggra1863.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00000050_pilon:977708..978275- (Gracilaria gracilis GNS1m male)
ATGATACTGAGTCGCGGTCTTGAAAACGGTTACTCGAAGGCCGAATTTCA
CAAAGACCTCCGTGAATTCATCGAGCCACAACTGGCTACAATTCCCAACC
TCCGCGTAGTTAACCCGGTCGACATCGCATCCAGCAAAGCGAAAAACCCT
GAGCATGACGAGGAGTTCACCAAGGCAAAGAAGGCACATGGCGGAGAGTC
GAATGAATGGAGTGCCAAGGGCGAAGTGTACTGGTGCACTGCCGCGTCTA
GCGATGAAGAGTCGAAGAAGGTGGAATATCAATCCAAGACGTTCAATGTG
GACAAGGGAAATACAAAACAGTTTCCTGATAACGCGTACATCTTTAACGG
ATATGTGGACACAGCGCTGACGTGGGAGGTGGAATGCTGGGAGGAAGATA
ATGAACGTGTGCGCGACAAGATGGACAGTCTTTTGAGTGACATTAGCGAC
GCTTATTGA
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