Ggra1781.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1781.t1
Unique Name	Ggra1781.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:608661..610283 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1781	Ggra1781	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 608661..610283 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1781.t1.start1	Ggra1781.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 608661..608663 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1781.t1.CDS1	Ggra1781.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 608661..610283 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1781.t1.exon1	Ggra1781.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 608661..610283 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1781.t1.stop1	Ggra1781.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 610281..610283 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1781.t1	Ggra1781.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 608661..610283 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:608661..610283+
coding sequence from alignment at tig00000050_pilon:608661..610283+

mRNA sequence

>Ggra1781.t1 ID=Ggra1781.t1|Name=Ggra1781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MSSSFPTSWEPYGSSQQNAALAWRRSATLPSQQPPPLTTRWQSTQDASQA
SPLPSLDPSQRELSAFQANDRDQKSVARFESLREEMQQVTAQLRQLNANI
ESIRNGQAQPFPALIAEVGRLSQLIGELVQRPGVHGRQSNLEFAVASSEK
RVTDTILAITDIVTSVQTSCAAFIPRLDSGLGSVERLIHAATSSVAADVP
KWFELAFQQMATHHVAPMLAASEARLKAQFEKSYANMITSVEKHVSMAVG
NGVAQVLNRISLEQTLGTQPTSVFPSQTGANLFSPNDVGDTKPQDKPTSV
LNKDTNVKQSPKTSPVEKSVKDNTGLPGPPPLTTNSPTAKRVSGGEDLRF
ATDSNIVHETIASLGTAANPKAVAVPNGSTKGHSSIGPGTKPQPLTTTQN
EVIILESKEAAKQMPSRKEEEPAVEELDLFEENEAHGKGKSSKSKKKEVA
QRRNGKRGVRQVRQRKQDYTEPNAVSGTDSSESKEPSEEEGEEESEWECG
ESDAGSQSSGASHGGEGFHRPGAKRTKRSFARRSKRRRQA*

spliced messenger RNA

>Ggra1781.t1 ID=Ggra1781.t1|Name=Ggra1781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:608661..610283+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCTCCTTCCCCACCAGCTGGGAGCCCTACGGTTCTAGCCAGCA
GAATGCCGCACTAGCCTGGCGTCGCTCCGCCACTCTGCCTTCGCAACAGC
CGCCTCCGTTGACTACCAGATGGCAGTCCACACAGGATGCATCCCAGGCT
TCGCCACTCCCTTCTTTGGATCCCAGCCAGCGTGAGCTGTCAGCCTTCCA
AGCAAATGACCGTGACCAGAAGTCTGTCGCCAGGTTTGAGTCCCTCAGGG
AGGAAATGCAACAGGTCACAGCCCAACTGCGACAGCTCAACGCGAACATA
GAAAGTATTAGAAACGGACAGGCCCAGCCTTTTCCAGCGCTCATTGCCGA
GGTGGGGCGTCTCAGTCAGCTGATCGGCGAGCTCGTGCAGCGGCCAGGAG
TCCATGGCCGCCAGTCCAACCTTGAGTTCGCAGTTGCGTCCTCGGAGAAG
CGAGTTACCGACACCATTCTGGCTATCACTGACATTGTTACTAGTGTCCA
AACCTCCTGCGCTGCCTTTATTCCCCGGCTTGATTCGGGGTTGGGGTCGG
TTGAGAGGCTTATTCATGCTGCAACCAGCTCTGTTGCAGCAGACGTTCCG
AAATGGTTTGAGCTCGCGTTTCAGCAAATGGCTACACATCATGTAGCGCC
AATGCTTGCGGCGTCAGAAGCACGCCTCAAGGCGCAGTTTGAGAAGAGTT
ACGCCAATATGATTACTAGCGTTGAGAAGCATGTAAGCATGGCAGTGGGA
AATGGTGTGGCTCAAGTTCTTAATAGGATCTCATTGGAACAAACTCTCGG
TACGCAGCCTACATCAGTATTCCCATCGCAAACGGGAGCAAATCTATTTT
CGCCGAATGATGTAGGTGACACCAAACCCCAAGACAAACCCACAAGTGTG
CTGAATAAGGATACGAACGTAAAGCAATCGCCAAAAACCTCACCTGTCGA
AAAGTCCGTGAAGGATAACACCGGACTTCCCGGGCCACCCCCTCTAACTA
CAAACTCACCGACAGCCAAGCGTGTTAGCGGTGGAGAGGACCTTCGGTTT
GCTACTGACAGCAACATCGTTCATGAGACCATAGCCTCATTAGGTACAGC
GGCAAACCCGAAGGCTGTTGCCGTGCCCAATGGGAGCACGAAGGGCCATT
CAAGCATTGGACCAGGAACTAAACCACAGCCCCTAACAACAACACAAAAT
GAAGTTATTATCTTAGAGTCTAAAGAAGCGGCAAAGCAAATGCCGTCGCG
AAAGGAAGAGGAACCTGCGGTAGAAGAACTTGATCTCTTTGAAGAAAATG
AAGCACATGGGAAAGGAAAGTCTTCTAAAAGCAAAAAAAAGGAAGTTGCT
CAACGTCGGAATGGAAAGCGCGGTGTCCGACAAGTACGACAACGGAAGCA
GGACTATACAGAACCGAATGCTGTGTCTGGAACTGACAGTTCGGAATCGA
AAGAACCATCGGAAGAGGAAGGTGAGGAGGAGTCTGAATGGGAATGTGGC
GAGTCTGATGCAGGTTCTCAGTCATCTGGAGCATCCCATGGAGGTGAAGG
CTTTCATCGTCCGGGTGCGAAGCGGACAAAACGATCGTTCGCCAGGCGTT
CGAAGCGGCGAAGACAAGCGTAG

protein sequence of Ggra1781.t1

>Ggra1781.t1 ID=Ggra1781.t1|Name=Ggra1781.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MSSSFPTSWEPYGSSQQNAALAWRRSATLPSQQPPPLTTRWQSTQDASQA
SPLPSLDPSQRELSAFQANDRDQKSVARFESLREEMQQVTAQLRQLNANI
ESIRNGQAQPFPALIAEVGRLSQLIGELVQRPGVHGRQSNLEFAVASSEK
RVTDTILAITDIVTSVQTSCAAFIPRLDSGLGSVERLIHAATSSVAADVP
KWFELAFQQMATHHVAPMLAASEARLKAQFEKSYANMITSVEKHVSMAVG
NGVAQVLNRISLEQTLGTQPTSVFPSQTGANLFSPNDVGDTKPQDKPTSV
LNKDTNVKQSPKTSPVEKSVKDNTGLPGPPPLTTNSPTAKRVSGGEDLRF
ATDSNIVHETIASLGTAANPKAVAVPNGSTKGHSSIGPGTKPQPLTTTQN
EVIILESKEAAKQMPSRKEEEPAVEELDLFEENEAHGKGKSSKSKKKEVA
QRRNGKRGVRQVRQRKQDYTEPNAVSGTDSSESKEPSEEEGEEESEWECG
ESDAGSQSSGASHGGEGFHRPGAKRTKRSFARRSKRRRQA*

mRNA from alignment at tig00000050_pilon:608661..610283+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1781.t1 ID=Ggra1781.t1|Name=Ggra1781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:608661..610283+ (Gracilaria gracilis GNS1m male)
ATGAGCTCCTCCTTCCCCACCAGCTGGGAGCCCTACGGTTCTAGCCAGCA
GAATGCCGCACTAGCCTGGCGTCGCTCCGCCACTCTGCCTTCGCAACAGC
CGCCTCCGTTGACTACCAGATGGCAGTCCACACAGGATGCATCCCAGGCT
TCGCCACTCCCTTCTTTGGATCCCAGCCAGCGTGAGCTGTCAGCCTTCCA
AGCAAATGACCGTGACCAGAAGTCTGTCGCCAGGTTTGAGTCCCTCAGGG
AGGAAATGCAACAGGTCACAGCCCAACTGCGACAGCTCAACGCGAACATA
GAAAGTATTAGAAACGGACAGGCCCAGCCTTTTCCAGCGCTCATTGCCGA
GGTGGGGCGTCTCAGTCAGCTGATCGGCGAGCTCGTGCAGCGGCCAGGAG
TCCATGGCCGCCAGTCCAACCTTGAGTTCGCAGTTGCGTCCTCGGAGAAG
CGAGTTACCGACACCATTCTGGCTATCACTGACATTGTTACTAGTGTCCA
AACCTCCTGCGCTGCCTTTATTCCCCGGCTTGATTCGGGGTTGGGGTCGG
TTGAGAGGCTTATTCATGCTGCAACCAGCTCTGTTGCAGCAGACGTTCCG
AAATGGTTTGAGCTCGCGTTTCAGCAAATGGCTACACATCATGTAGCGCC
AATGCTTGCGGCGTCAGAAGCACGCCTCAAGGCGCAGTTTGAGAAGAGTT
ACGCCAATATGATTACTAGCGTTGAGAAGCATGTAAGCATGGCAGTGGGA
AATGGTGTGGCTCAAGTTCTTAATAGGATCTCATTGGAACAAACTCTCGG
TACGCAGCCTACATCAGTATTCCCATCGCAAACGGGAGCAAATCTATTTT
CGCCGAATGATGTAGGTGACACCAAACCCCAAGACAAACCCACAAGTGTG
CTGAATAAGGATACGAACGTAAAGCAATCGCCAAAAACCTCACCTGTCGA
AAAGTCCGTGAAGGATAACACCGGACTTCCCGGGCCACCCCCTCTAACTA
CAAACTCACCGACAGCCAAGCGTGTTAGCGGTGGAGAGGACCTTCGGTTT
GCTACTGACAGCAACATCGTTCATGAGACCATAGCCTCATTAGGTACAGC
GGCAAACCCGAAGGCTGTTGCCGTGCCCAATGGGAGCACGAAGGGCCATT
CAAGCATTGGACCAGGAACTAAACCACAGCCCCTAACAACAACACAAAAT
GAAGTTATTATCTTAGAGTCTAAAGAAGCGGCAAAGCAAATGCCGTCGCG
AAAGGAAGAGGAACCTGCGGTAGAAGAACTTGATCTCTTTGAAGAAAATG
AAGCACATGGGAAAGGAAAGTCTTCTAAAAGCAAAAAAAAGGAAGTTGCT
CAACGTCGGAATGGAAAGCGCGGTGTCCGACAAGTACGACAACGGAAGCA
GGACTATACAGAACCGAATGCTGTGTCTGGAACTGACAGTTCGGAATCGA
AAGAACCATCGGAAGAGGAAGGTGAGGAGGAGTCTGAATGGGAATGTGGC
GAGTCTGATGCAGGTTCTCAGTCATCTGGAGCATCCCATGGAGGTGAAGG
CTTTCATCGTCCGGGTGCGAAGCGGACAAAACGATCGTTCGCCAGGCGTT
CGAAGCGGCGAAGACAAGCGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:608661..610283+

>Ggra1781.t1 ID=Ggra1781.t1|Name=Ggra1781.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:608661..610283+ (Gracilaria gracilis GNS1m male)
ATGAGCTCCTCCTTCCCCACCAGCTGGGAGCCCTACGGTTCTAGCCAGCA
GAATGCCGCACTAGCCTGGCGTCGCTCCGCCACTCTGCCTTCGCAACAGC
CGCCTCCGTTGACTACCAGATGGCAGTCCACACAGGATGCATCCCAGGCT
TCGCCACTCCCTTCTTTGGATCCCAGCCAGCGTGAGCTGTCAGCCTTCCA
AGCAAATGACCGTGACCAGAAGTCTGTCGCCAGGTTTGAGTCCCTCAGGG
AGGAAATGCAACAGGTCACAGCCCAACTGCGACAGCTCAACGCGAACATA
GAAAGTATTAGAAACGGACAGGCCCAGCCTTTTCCAGCGCTCATTGCCGA
GGTGGGGCGTCTCAGTCAGCTGATCGGCGAGCTCGTGCAGCGGCCAGGAG
TCCATGGCCGCCAGTCCAACCTTGAGTTCGCAGTTGCGTCCTCGGAGAAG
CGAGTTACCGACACCATTCTGGCTATCACTGACATTGTTACTAGTGTCCA
AACCTCCTGCGCTGCCTTTATTCCCCGGCTTGATTCGGGGTTGGGGTCGG
TTGAGAGGCTTATTCATGCTGCAACCAGCTCTGTTGCAGCAGACGTTCCG
AAATGGTTTGAGCTCGCGTTTCAGCAAATGGCTACACATCATGTAGCGCC
AATGCTTGCGGCGTCAGAAGCACGCCTCAAGGCGCAGTTTGAGAAGAGTT
ACGCCAATATGATTACTAGCGTTGAGAAGCATGTAAGCATGGCAGTGGGA
AATGGTGTGGCTCAAGTTCTTAATAGGATCTCATTGGAACAAACTCTCGG
TACGCAGCCTACATCAGTATTCCCATCGCAAACGGGAGCAAATCTATTTT
CGCCGAATGATGTAGGTGACACCAAACCCCAAGACAAACCCACAAGTGTG
CTGAATAAGGATACGAACGTAAAGCAATCGCCAAAAACCTCACCTGTCGA
AAAGTCCGTGAAGGATAACACCGGACTTCCCGGGCCACCCCCTCTAACTA
CAAACTCACCGACAGCCAAGCGTGTTAGCGGTGGAGAGGACCTTCGGTTT
GCTACTGACAGCAACATCGTTCATGAGACCATAGCCTCATTAGGTACAGC
GGCAAACCCGAAGGCTGTTGCCGTGCCCAATGGGAGCACGAAGGGCCATT
CAAGCATTGGACCAGGAACTAAACCACAGCCCCTAACAACAACACAAAAT
GAAGTTATTATCTTAGAGTCTAAAGAAGCGGCAAAGCAAATGCCGTCGCG
AAAGGAAGAGGAACCTGCGGTAGAAGAACTTGATCTCTTTGAAGAAAATG
AAGCACATGGGAAAGGAAAGTCTTCTAAAAGCAAAAAAAAGGAAGTTGCT
CAACGTCGGAATGGAAAGCGCGGTGTCCGACAAGTACGACAACGGAAGCA
GGACTATACAGAACCGAATGCTGTGTCTGGAACTGACAGTTCGGAATCGA
AAGAACCATCGGAAGAGGAAGGTGAGGAGGAGTCTGAATGGGAATGTGGC
GAGTCTGATGCAGGTTCTCAGTCATCTGGAGCATCCCATGGAGGTGAAGG
CTTTCATCGTCCGGGTGCGAAGCGGACAAAACGATCGTTCGCCAGGCGTT
CGAAGCGGCGAAGACAAGCGTAG