Ggra1772.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1772.t1
Unique NameGgra1772.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:590579..592027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S162_81V6.1
PFAMsBT1
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0008517,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015075,GO:0015231,GO:0015238,GO:0015318,GO:0015350,GO:0015711,GO:0015849,GO:0015884,GO:0015885,GO:0015893,GO:0022857,GO:0031967,GO:0031975,GO:0034220,GO:0035461,GO:0042221,GO:0042493,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051234,GO:0051958,GO:0055085,GO:0071702,GO:0071705,GO:0072337,GO:0072349,GO:0090482,GO:0098656,GO:1903825,GO:1905039
Evalue1.35e-152
EggNOG OGs2CMCD@1|root,2QPYM@2759|Eukaryota,37Q5D@33090|Viridiplantae,3GEDP@35493|Streptophyta
DescriptionFolate-biopterin transporter 1
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1772Ggra1772Gracilaria gracilis GNS1m malegenetig00000050_pilon 590579..592027 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1772.t1.start1Ggra1772.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 590579..590581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1772.t1.CDS1Ggra1772.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 590579..592027 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1772.t1.exon1Ggra1772.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 590579..592027 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1772.t1.stop1Ggra1772.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 592025..592027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1772.t1Ggra1772.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 590579..592027 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1772.t1 ID=Ggra1772.t1|Name=Ggra1772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MPHGPQVQNGTNIRLPLRKILAGFDPSPELAAILTVYFVQGALGISRLAV
SFFMKDTLGLSPAESAALSGAALLPWLVKPLYGFLSDSLPVFGYRRRSYL
IAAGALGAAGWLSLSTFVDSAFWTLIATVASSLSVAVSDVVADSIVVEKV
RGLSDERSGALQSLCWGTSAIGGLISAYFSGSLLETIGVREIFALTAFLP
LLTSLLAGLINENKVPPMPMSGFLPSAKNRSLSLWKALKNPRVYLPIAFV
FAWQATPSPESAMFFFTTNELHFGPEFLGRVRLVSSGAALLGLWLYRTYL
RNLDLKVFFLWATLLSVPLSLTQVVLVTRANVALGISDQLFALSDSAVLT
ALGQVAFMPTLVLAARLCPPGVEGTLFAAIMSIYNGSGAVSSELGALLTT
ALGVTDSNFDNLWLLVLLCSLSSLLALPLLKFLDTSTYEALENSESFALQ
AKESSQVPDSSVETRSNTIPSPSTGVDSKDNT*
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spliced messenger RNA

>Ggra1772.t1 ID=Ggra1772.t1|Name=Ggra1772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000050_pilon:590579..592027+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCATGGCCCTCAAGTGCAAAATGGAACTAACATTCGACTTCCCCT
TCGGAAGATTTTGGCTGGTTTCGACCCATCTCCCGAACTGGCAGCCATTC
TAACAGTATATTTCGTACAGGGAGCACTAGGCATATCTCGTTTGGCCGTT
TCATTCTTCATGAAAGATACGTTGGGATTATCGCCAGCAGAGTCTGCAGC
TTTGAGTGGTGCAGCTTTGTTACCATGGCTAGTTAAGCCCTTGTATGGTT
TCCTTAGTGACTCTCTTCCCGTCTTCGGATACCGTCGGCGGTCGTACCTT
ATAGCAGCTGGTGCACTTGGAGCTGCGGGGTGGCTTTCCCTCTCCACTTT
TGTTGATTCTGCGTTCTGGACACTCATAGCAACTGTTGCCTCATCTCTTT
CCGTAGCCGTTTCTGACGTGGTCGCAGACTCAATTGTCGTCGAAAAGGTG
CGGGGTCTCTCCGATGAACGATCTGGGGCTCTGCAATCTTTGTGCTGGGG
AACATCTGCGATTGGTGGTTTGATATCTGCGTATTTCAGTGGAAGCCTCT
TGGAAACGATCGGAGTCAGGGAGATTTTCGCTTTAACAGCCTTTCTTCCA
TTGCTTACAAGTCTACTCGCCGGTCTAATCAATGAAAACAAAGTCCCACC
CATGCCAATGTCAGGGTTCTTGCCCTCTGCCAAGAACAGGTCATTGTCAT
TATGGAAGGCTTTGAAAAACCCAAGAGTTTACTTGCCTATAGCGTTCGTA
TTCGCTTGGCAGGCAACACCTTCACCTGAGTCTGCCATGTTCTTTTTCAC
TACCAACGAGCTTCATTTTGGACCGGAATTTCTCGGCCGGGTGCGCTTAG
TGTCGTCCGGGGCTGCACTGCTTGGCCTCTGGCTCTATAGAACGTATCTT
CGAAACCTGGATTTGAAGGTGTTTTTCTTGTGGGCAACACTATTGAGTGT
GCCTCTGAGCCTCACGCAAGTAGTGCTTGTTACTCGTGCGAACGTAGCCT
TGGGCATCTCAGACCAATTATTTGCGCTCTCGGACTCCGCCGTACTGACG
GCACTGGGACAAGTAGCGTTCATGCCAACATTGGTTTTAGCGGCTCGCCT
ATGCCCACCCGGGGTAGAAGGCACATTGTTTGCAGCGATAATGAGCATAT
ACAATGGAAGTGGTGCCGTTTCTAGTGAGCTGGGAGCTTTGCTGACCACA
GCTCTTGGAGTAACAGATTCTAACTTTGATAATCTTTGGTTGCTGGTTCT
GCTGTGCAGTTTAAGCAGTCTGCTAGCACTCCCACTGCTCAAATTCCTCG
ATACTTCAACATATGAAGCGTTAGAGAACAGTGAATCTTTCGCCTTACAA
GCCAAAGAATCTTCTCAAGTTCCGGATTCCTCTGTTGAAACAAGAAGCAA
CACAATCCCGAGTCCATCCACAGGAGTTGATTCAAAAGACAACACTTAA
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protein sequence of Ggra1772.t1

>Ggra1772.t1 ID=Ggra1772.t1|Name=Ggra1772.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MPHGPQVQNGTNIRLPLRKILAGFDPSPELAAILTVYFVQGALGISRLAV
SFFMKDTLGLSPAESAALSGAALLPWLVKPLYGFLSDSLPVFGYRRRSYL
IAAGALGAAGWLSLSTFVDSAFWTLIATVASSLSVAVSDVVADSIVVEKV
RGLSDERSGALQSLCWGTSAIGGLISAYFSGSLLETIGVREIFALTAFLP
LLTSLLAGLINENKVPPMPMSGFLPSAKNRSLSLWKALKNPRVYLPIAFV
FAWQATPSPESAMFFFTTNELHFGPEFLGRVRLVSSGAALLGLWLYRTYL
RNLDLKVFFLWATLLSVPLSLTQVVLVTRANVALGISDQLFALSDSAVLT
ALGQVAFMPTLVLAARLCPPGVEGTLFAAIMSIYNGSGAVSSELGALLTT
ALGVTDSNFDNLWLLVLLCSLSSLLALPLLKFLDTSTYEALENSESFALQ
AKESSQVPDSSVETRSNTIPSPSTGVDSKDNT*
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mRNA from alignment at tig00000050_pilon:590579..592027+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1772.t1 ID=Ggra1772.t1|Name=Ggra1772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000050_pilon:590579..592027+ (Gracilaria gracilis GNS1m male)
ATGCCTCATGGCCCTCAAGTGCAAAATGGAACTAACATTCGACTTCCCCT
TCGGAAGATTTTGGCTGGTTTCGACCCATCTCCCGAACTGGCAGCCATTC
TAACAGTATATTTCGTACAGGGAGCACTAGGCATATCTCGTTTGGCCGTT
TCATTCTTCATGAAAGATACGTTGGGATTATCGCCAGCAGAGTCTGCAGC
TTTGAGTGGTGCAGCTTTGTTACCATGGCTAGTTAAGCCCTTGTATGGTT
TCCTTAGTGACTCTCTTCCCGTCTTCGGATACCGTCGGCGGTCGTACCTT
ATAGCAGCTGGTGCACTTGGAGCTGCGGGGTGGCTTTCCCTCTCCACTTT
TGTTGATTCTGCGTTCTGGACACTCATAGCAACTGTTGCCTCATCTCTTT
CCGTAGCCGTTTCTGACGTGGTCGCAGACTCAATTGTCGTCGAAAAGGTG
CGGGGTCTCTCCGATGAACGATCTGGGGCTCTGCAATCTTTGTGCTGGGG
AACATCTGCGATTGGTGGTTTGATATCTGCGTATTTCAGTGGAAGCCTCT
TGGAAACGATCGGAGTCAGGGAGATTTTCGCTTTAACAGCCTTTCTTCCA
TTGCTTACAAGTCTACTCGCCGGTCTAATCAATGAAAACAAAGTCCCACC
CATGCCAATGTCAGGGTTCTTGCCCTCTGCCAAGAACAGGTCATTGTCAT
TATGGAAGGCTTTGAAAAACCCAAGAGTTTACTTGCCTATAGCGTTCGTA
TTCGCTTGGCAGGCAACACCTTCACCTGAGTCTGCCATGTTCTTTTTCAC
TACCAACGAGCTTCATTTTGGACCGGAATTTCTCGGCCGGGTGCGCTTAG
TGTCGTCCGGGGCTGCACTGCTTGGCCTCTGGCTCTATAGAACGTATCTT
CGAAACCTGGATTTGAAGGTGTTTTTCTTGTGGGCAACACTATTGAGTGT
GCCTCTGAGCCTCACGCAAGTAGTGCTTGTTACTCGTGCGAACGTAGCCT
TGGGCATCTCAGACCAATTATTTGCGCTCTCGGACTCCGCCGTACTGACG
GCACTGGGACAAGTAGCGTTCATGCCAACATTGGTTTTAGCGGCTCGCCT
ATGCCCACCCGGGGTAGAAGGCACATTGTTTGCAGCGATAATGAGCATAT
ACAATGGAAGTGGTGCCGTTTCTAGTGAGCTGGGAGCTTTGCTGACCACA
GCTCTTGGAGTAACAGATTCTAACTTTGATAATCTTTGGTTGCTGGTTCT
GCTGTGCAGTTTAAGCAGTCTGCTAGCACTCCCACTGCTCAAATTCCTCG
ATACTTCAACATATGAAGCGTTAGAGAACAGTGAATCTTTCGCCTTACAA
GCCAAAGAATCTTCTCAAGTTCCGGATTCCTCTGTTGAAACAAGAAGCAA
CACAATCCCGAGTCCATCCACAGGAGTTGATTCAAAAGACAACACTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:590579..592027+

>Ggra1772.t1 ID=Ggra1772.t1|Name=Ggra1772.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000050_pilon:590579..592027+ (Gracilaria gracilis GNS1m male)
ATGCCTCATGGCCCTCAAGTGCAAAATGGAACTAACATTCGACTTCCCCT
TCGGAAGATTTTGGCTGGTTTCGACCCATCTCCCGAACTGGCAGCCATTC
TAACAGTATATTTCGTACAGGGAGCACTAGGCATATCTCGTTTGGCCGTT
TCATTCTTCATGAAAGATACGTTGGGATTATCGCCAGCAGAGTCTGCAGC
TTTGAGTGGTGCAGCTTTGTTACCATGGCTAGTTAAGCCCTTGTATGGTT
TCCTTAGTGACTCTCTTCCCGTCTTCGGATACCGTCGGCGGTCGTACCTT
ATAGCAGCTGGTGCACTTGGAGCTGCGGGGTGGCTTTCCCTCTCCACTTT
TGTTGATTCTGCGTTCTGGACACTCATAGCAACTGTTGCCTCATCTCTTT
CCGTAGCCGTTTCTGACGTGGTCGCAGACTCAATTGTCGTCGAAAAGGTG
CGGGGTCTCTCCGATGAACGATCTGGGGCTCTGCAATCTTTGTGCTGGGG
AACATCTGCGATTGGTGGTTTGATATCTGCGTATTTCAGTGGAAGCCTCT
TGGAAACGATCGGAGTCAGGGAGATTTTCGCTTTAACAGCCTTTCTTCCA
TTGCTTACAAGTCTACTCGCCGGTCTAATCAATGAAAACAAAGTCCCACC
CATGCCAATGTCAGGGTTCTTGCCCTCTGCCAAGAACAGGTCATTGTCAT
TATGGAAGGCTTTGAAAAACCCAAGAGTTTACTTGCCTATAGCGTTCGTA
TTCGCTTGGCAGGCAACACCTTCACCTGAGTCTGCCATGTTCTTTTTCAC
TACCAACGAGCTTCATTTTGGACCGGAATTTCTCGGCCGGGTGCGCTTAG
TGTCGTCCGGGGCTGCACTGCTTGGCCTCTGGCTCTATAGAACGTATCTT
CGAAACCTGGATTTGAAGGTGTTTTTCTTGTGGGCAACACTATTGAGTGT
GCCTCTGAGCCTCACGCAAGTAGTGCTTGTTACTCGTGCGAACGTAGCCT
TGGGCATCTCAGACCAATTATTTGCGCTCTCGGACTCCGCCGTACTGACG
GCACTGGGACAAGTAGCGTTCATGCCAACATTGGTTTTAGCGGCTCGCCT
ATGCCCACCCGGGGTAGAAGGCACATTGTTTGCAGCGATAATGAGCATAT
ACAATGGAAGTGGTGCCGTTTCTAGTGAGCTGGGAGCTTTGCTGACCACA
GCTCTTGGAGTAACAGATTCTAACTTTGATAATCTTTGGTTGCTGGTTCT
GCTGTGCAGTTTAAGCAGTCTGCTAGCACTCCCACTGCTCAAATTCCTCG
ATACTTCAACATATGAAGCGTTAGAGAACAGTGAATCTTTCGCCTTACAA
GCCAAAGAATCTTCTCAAGTTCCGGATTCCTCTGTTGAAACAAGAAGCAA
CACAATCCCGAGTCCATCCACAGGAGTTGATTCAAAAGACAACACTTAA
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