Ggra1645.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1645.t1
Unique NameGgra1645.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:255138..255731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo3g004190.1
PFAMsPRA1
Max annot lvl35493|Streptophyta
KEGG koko:K20359
KEGG TC9.A.49.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016192,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234
Evalue1.27e-06
EggNOG OGsKOG3142@1|root,KOG3142@2759|Eukaryota,37RJ6@33090|Viridiplantae,3GWMA@35493|Streptophyta,3I00W@3699|Brassicales
DescriptionMay be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments
COG categoryU
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1645Ggra1645Gracilaria gracilis GNS1m malegenetig00000050_pilon 255138..255731 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1645.t1.start1Ggra1645.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 255138..255140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1645.t1.CDS1Ggra1645.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 255138..255731 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1645.t1.exon1Ggra1645.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 255138..255731 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1645.t1.stop1Ggra1645.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 255729..255731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1645.t1Ggra1645.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 255138..255731 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1645.t1 ID=Ggra1645.t1|Name=Ggra1645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MSYGSAADEERTLAYAETKQMPAASASKSRPTSAALDVQSNHVAESQQHV
SATTDRVVSYARNTWRECRPWNEFYSTRALSVPQFASLSERVAKNLHVYR
ANYLVLVAFWCAIMMLRSIPSVIVAALLFLSVERWSARRNGLSPRDKVLV
AFLVLLVIWLTDIGSFAITSLVLSSVSVALHATFHETDVVETEIATV*
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spliced messenger RNA

>Ggra1645.t1 ID=Ggra1645.t1|Name=Ggra1645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000050_pilon:255138..255731+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTACGGCTCGGCCGCCGACGAGGAGCGAACGCTCGCGTACGCAGA
GACCAAGCAGATGCCCGCTGCCTCCGCGAGCAAGTCGCGTCCGACCAGCG
CCGCGCTCGATGTTCAGTCGAACCACGTTGCTGAATCGCAGCAACATGTC
TCCGCCACCACCGACCGCGTCGTCAGCTATGCGCGCAATACATGGCGCGA
ATGTCGTCCTTGGAATGAATTTTACTCCACGCGCGCCTTGTCGGTGCCGC
AGTTTGCCTCGTTGAGCGAACGCGTTGCAAAGAATCTTCACGTGTATCGC
GCCAACTACCTGGTGCTTGTTGCCTTTTGGTGCGCTATTATGATGCTTCG
TTCCATCCCGAGCGTCATTGTCGCCGCGCTGTTGTTCCTGTCTGTTGAAC
GATGGTCTGCAAGAAGGAATGGGCTTTCGCCGCGAGACAAGGTTCTCGTC
GCCTTCCTGGTGCTGCTTGTTATTTGGCTCACCGATATTGGCAGCTTTGC
AATCACATCGCTCGTGCTGTCGTCTGTTTCCGTCGCTCTGCATGCCACTT
TCCACGAGACTGACGTTGTAGAAACCGAGATAGCTACCGTCTAG
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protein sequence of Ggra1645.t1

>Ggra1645.t1 ID=Ggra1645.t1|Name=Ggra1645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MSYGSAADEERTLAYAETKQMPAASASKSRPTSAALDVQSNHVAESQQHV
SATTDRVVSYARNTWRECRPWNEFYSTRALSVPQFASLSERVAKNLHVYR
ANYLVLVAFWCAIMMLRSIPSVIVAALLFLSVERWSARRNGLSPRDKVLV
AFLVLLVIWLTDIGSFAITSLVLSSVSVALHATFHETDVVETEIATV*
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mRNA from alignment at tig00000050_pilon:255138..255731+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1645.t1 ID=Ggra1645.t1|Name=Ggra1645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000050_pilon:255138..255731+ (Gracilaria gracilis GNS1m male)
ATGAGCTACGGCTCGGCCGCCGACGAGGAGCGAACGCTCGCGTACGCAGA
GACCAAGCAGATGCCCGCTGCCTCCGCGAGCAAGTCGCGTCCGACCAGCG
CCGCGCTCGATGTTCAGTCGAACCACGTTGCTGAATCGCAGCAACATGTC
TCCGCCACCACCGACCGCGTCGTCAGCTATGCGCGCAATACATGGCGCGA
ATGTCGTCCTTGGAATGAATTTTACTCCACGCGCGCCTTGTCGGTGCCGC
AGTTTGCCTCGTTGAGCGAACGCGTTGCAAAGAATCTTCACGTGTATCGC
GCCAACTACCTGGTGCTTGTTGCCTTTTGGTGCGCTATTATGATGCTTCG
TTCCATCCCGAGCGTCATTGTCGCCGCGCTGTTGTTCCTGTCTGTTGAAC
GATGGTCTGCAAGAAGGAATGGGCTTTCGCCGCGAGACAAGGTTCTCGTC
GCCTTCCTGGTGCTGCTTGTTATTTGGCTCACCGATATTGGCAGCTTTGC
AATCACATCGCTCGTGCTGTCGTCTGTTTCCGTCGCTCTGCATGCCACTT
TCCACGAGACTGACGTTGTAGAAACCGAGATAGCTACCGTCTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:255138..255731+

>Ggra1645.t1 ID=Ggra1645.t1|Name=Ggra1645.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000050_pilon:255138..255731+ (Gracilaria gracilis GNS1m male)
ATGAGCTACGGCTCGGCCGCCGACGAGGAGCGAACGCTCGCGTACGCAGA
GACCAAGCAGATGCCCGCTGCCTCCGCGAGCAAGTCGCGTCCGACCAGCG
CCGCGCTCGATGTTCAGTCGAACCACGTTGCTGAATCGCAGCAACATGTC
TCCGCCACCACCGACCGCGTCGTCAGCTATGCGCGCAATACATGGCGCGA
ATGTCGTCCTTGGAATGAATTTTACTCCACGCGCGCCTTGTCGGTGCCGC
AGTTTGCCTCGTTGAGCGAACGCGTTGCAAAGAATCTTCACGTGTATCGC
GCCAACTACCTGGTGCTTGTTGCCTTTTGGTGCGCTATTATGATGCTTCG
TTCCATCCCGAGCGTCATTGTCGCCGCGCTGTTGTTCCTGTCTGTTGAAC
GATGGTCTGCAAGAAGGAATGGGCTTTCGCCGCGAGACAAGGTTCTCGTC
GCCTTCCTGGTGCTGCTTGTTATTTGGCTCACCGATATTGGCAGCTTTGC
AATCACATCGCTCGTGCTGTCGTCTGTTTCCGTCGCTCTGCATGCCACTT
TCCACGAGACTGACGTTGTAGAAACCGAGATAGCTACCGTCTAG
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