Ggra1645.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1645.t1
Unique NameGgra1645.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Homology
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BLAST of Ggra1645.t1 vs. uniprot
Match: A0A2V3IJE6 (PRA1 family protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJE6_9FLOR)

HSP 1 Score: 230 bits (586), Expect = 8.450e-74
Identity = 123/203 (60.59%), Postives = 159/203 (78.33%), Query Frame = 0 
Query:    1 MSYGSAADEERTLAYAETKQMPAASA-SKSRPTSAALDVQSNHVAESQQHVSATTDRVVSYARNTWRECRPWNEFYSTRALSVPQFASLSERVAKNLHVYRANYLVLVAFWCAIMMLRSIPSVIVAALLFLSVERWSARR-----NGLSPRDKVLVAFLVLLVIWLTDIGSFAITSLVLSSVSVALHATFHETDVVETEIATV 197
            MSYGSAADEE  L+YAE +   A+SA S+S P +   D   N   + Q  +S  T RV++YA+ TWR+CRPW EFYSTRALS+PQFASLS+RV+ NLHVYRANY V+VAFW   ++LRSIPS ++AA++F ++ER+ ARR     N L  RDK+++A +VLLVIWLTDIGSFA+++LVLS+++V++HATFHETD VETEIATV
Sbjct:    1 MSYGSAADEETALSYAEPRHAAASSAKSRSLPATMHADTPQNGSVDPQHSISTATQRVITYAQTTWRQCRPWKEFYSTRALSLPQFASLSDRVSVNLHVYRANYQVIVAFWIVGVLLRSIPSFLLAAVIFFAIERYIARRMLMNNNVLPARDKLVIALIVLLVIWLTDIGSFAVSALVLSAITVSIHATFHETDAVETEIATV 203
The following BLAST results are available for this feature:
BLAST of Ggra1645.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJE68.450e-7460.59PRA1 family protein n=1 Tax=Gracilariopsis chorda ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 65..188
e-value: 2.9E-15
score: 56.2
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 32..188
NoneNo IPR availablePANTHERPTHR19317:SF0PRENYLATED RAB ACCEPTOR PROTEIN 1coord: 32..188
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 103..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 174..197
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 130..148
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 149..173
NoneNo IPR availableTMHMMTMhelixcoord: 106..128
NoneNo IPR availableTMHMMTMhelixcoord: 149..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:255138..255731 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1645.t1Ggra1645.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 255138..255731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1645.t1 ID=Ggra1645.t1|Name=Ggra1645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MSYGSAADEERTLAYAETKQMPAASASKSRPTSAALDVQSNHVAESQQHV
SATTDRVVSYARNTWRECRPWNEFYSTRALSVPQFASLSERVAKNLHVYR
ANYLVLVAFWCAIMMLRSIPSVIVAALLFLSVERWSARRNGLSPRDKVLV
AFLVLLVIWLTDIGSFAITSLVLSSVSVALHATFHETDVVETEIATV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1