Ggra1851.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1851.t1
Unique NameGgra1851.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:936552..937601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1851Ggra1851Gracilaria gracilis GNS1m malegenetig00000050_pilon 936552..937601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1851.t1Ggra1851.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 936552..937601 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1851.t1.stop1Ggra1851.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 936552..936554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1851.t1.CDS1Ggra1851.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 936552..936854 -
Ggra1851.t1.CDS2Ggra1851.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 937005..937601 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1851.t1.exon1Ggra1851.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 936552..936854 -
Ggra1851.t1.exon2Ggra1851.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 937005..937601 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1851.t1.intron1Ggra1851.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 936855..937004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1851.t1.start1Ggra1851.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 937599..937601 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1851.t1 ID=Ggra1851.t1|Name=Ggra1851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MPFLRCPEEYEYQGLVRSLVTRMLANDTVPDPNGNPLGMLLLQPPYDKLY
SLNRRCSGDNAATEARVRAGLGGFMFGWHNLEFFDIALSEREHLYVKIPQ
NWADVDAPRSLSVITPPVLSYYSDDVLSDTPISERIMRIAYAGWALYTLM
AFLQAATDGVKVFTRTKDPRLNYSRGFPGSSGSQEPPGLGRLFLLPYGLF
PAMSVGGAGMPAVAHRLVPQFARPSLEFPGVEGYYPLGFMDPSKQPDDED
AVMHPSRNQKTTRALPSPTSKEVGIQTPSGGVEEQEAFQRLRERCLAAH*
back to top

spliced messenger RNA

>Ggra1851.t1 ID=Ggra1851.t1|Name=Ggra1851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000050_pilon:936552..937601- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTCTCCGTTGTCCGGAGGAATACGAATACCAGGGGCTGGTGCG
CAGTCTCGTCACGCGCATGCTTGCCAATGACACTGTTCCTGATCCGAACG
GGAATCCTCTTGGGATGTTACTACTGCAGCCTCCGTACGACAAGCTATAT
TCCCTAAATCGCCGCTGTTCGGGCGATAACGCTGCCACCGAAGCGAGAGT
CCGGGCGGGTTTGGGCGGCTTCATGTTTGGTTGGCACAATCTAGAGTTCT
TCGACATCGCTCTTTCCGAAAGGGAGCACTTGTACGTGAAGATACCGCAG
AATTGGGCGGACGTGGATGCTCCGCGCAGCCTCTCCGTCATCACCCCACC
TGTTCTGTCGTACTATTCGGACGACGTATTGAGCGACACTCCCATTTCCG
AACGGATTATGAGAATCGCCTACGCGGGGTGGGCCCTGTACACGCTCATG
GCCTTCCTCCAGGCCGCGACGGACGGCGTGAAAGTCTTCACTAGGACGAA
GGATCCCCGTCTCAACTACTCTCGGGGTTTTCCGGGTAGTTCTGGGAGTC
AGGAACCTCCGGGACTTGGTCGGCTGTTTCTCCTTCCGTACGGATTATTT
CCTGCTATGTCAGTCGGTGGTGCGGGCATGCCCGCTGTTGCGCATCGGCT
GGTGCCGCAGTTCGCACGGCCATCTTTGGAATTCCCGGGTGTAGAGGGTT
ACTATCCGCTCGGGTTCATGGATCCGAGCAAGCAGCCGGACGACGAGGAT
GCTGTCATGCATCCGTCCAGAAACCAGAAGACCACTCGGGCGTTGCCGTC
GCCAACGTCCAAGGAGGTCGGAATTCAGACGCCTTCAGGGGGTGTAGAGG
AGCAGGAAGCCTTCCAACGCTTACGGGAGCGCTGCCTGGCGGCGCATTAA
back to top

protein sequence of Ggra1851.t1

>Ggra1851.t1 ID=Ggra1851.t1|Name=Ggra1851.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MPFLRCPEEYEYQGLVRSLVTRMLANDTVPDPNGNPLGMLLLQPPYDKLY
SLNRRCSGDNAATEARVRAGLGGFMFGWHNLEFFDIALSEREHLYVKIPQ
NWADVDAPRSLSVITPPVLSYYSDDVLSDTPISERIMRIAYAGWALYTLM
AFLQAATDGVKVFTRTKDPRLNYSRGFPGSSGSQEPPGLGRLFLLPYGLF
PAMSVGGAGMPAVAHRLVPQFARPSLEFPGVEGYYPLGFMDPSKQPDDED
AVMHPSRNQKTTRALPSPTSKEVGIQTPSGGVEEQEAFQRLRERCLAAH*
back to top

mRNA from alignment at tig00000050_pilon:936552..937601-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1851.t1 ID=Ggra1851.t1|Name=Ggra1851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000050_pilon:936552..937601- (Gracilaria gracilis GNS1m male)
ATGCCGTTTCTCCGTTGTCCGGAGGAATACGAATACCAGGGGCTGGTGCG
CAGTCTCGTCACGCGCATGCTTGCCAATGACACTGTTCCTGATCCGAACG
GGAATCCTCTTGGGATGTTACTACTGCAGCCTCCGTACGACAAGCTATAT
TCCCTAAATCGCCGCTGTTCGGGCGATAACGCTGCCACCGAAGCGAGAGT
CCGGGCGGGTTTGGGCGGCTTCATGTTTGGTTGGCACAATCTAGAGTTCT
TCGACATCGCTCTTTCCGAAAGGGAGCACTTGTACGTGAAGATACCGCAG
AATTGGGCGGACGTGGATGCTCCGCGCAGCCTCTCCGTCATCACCCCACC
TGTTCTGTCGTACTATTCGGACGACGTATTGAGCGACACTCCCATTTCCG
AACGGATTATGAGAATCGCCTACGCGGGGTGGGCCCTGTACACGCTCATG
GCCTTCCTCCAGGCCGCGACGGACGGCGTGAAAGTCTTCACTAGGACGAA
GGATCCCCGTCTCAACTACTCTCGGGGTTTTCCGGGTAGTTCTGGGAGTC
AGGAACCTCCGGGACTTGGTCGGCTGTTTCTCCTTCCGTACGGATTAGTG
TGTGTCTTCATGCAAATGGGACTGCAGAACCTCCTTCGGGGAACCGACTT
CACGATGCCGACGGTGAAGAAATAGCTTTTTCTTTCGGTCATGACCGACT
GGTCTGATACTCCGGTTTTCCTTTGGTTTAACCCACGCACAAGTCAGTTT
CCTGCTATGTCAGTCGGTGGTGCGGGCATGCCCGCTGTTGCGCATCGGCT
GGTGCCGCAGTTCGCACGGCCATCTTTGGAATTCCCGGGTGTAGAGGGTT
ACTATCCGCTCGGGTTCATGGATCCGAGCAAGCAGCCGGACGACGAGGAT
GCTGTCATGCATCCGTCCAGAAACCAGAAGACCACTCGGGCGTTGCCGTC
GCCAACGTCCAAGGAGGTCGGAATTCAGACGCCTTCAGGGGGTGTAGAGG
AGCAGGAAGCCTTCCAACGCTTACGGGAGCGCTGCCTGGCGGCGCATTAA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:936552..937601-

>Ggra1851.t1 ID=Ggra1851.t1|Name=Ggra1851.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000050_pilon:936552..937601- (Gracilaria gracilis GNS1m male)
ATGCCGTTTCTCCGTTGTCCGGAGGAATACGAATACCAGGGGCTGGTGCG
CAGTCTCGTCACGCGCATGCTTGCCAATGACACTGTTCCTGATCCGAACG
GGAATCCTCTTGGGATGTTACTACTGCAGCCTCCGTACGACAAGCTATAT
TCCCTAAATCGCCGCTGTTCGGGCGATAACGCTGCCACCGAAGCGAGAGT
CCGGGCGGGTTTGGGCGGCTTCATGTTTGGTTGGCACAATCTAGAGTTCT
TCGACATCGCTCTTTCCGAAAGGGAGCACTTGTACGTGAAGATACCGCAG
AATTGGGCGGACGTGGATGCTCCGCGCAGCCTCTCCGTCATCACCCCACC
TGTTCTGTCGTACTATTCGGACGACGTATTGAGCGACACTCCCATTTCCG
AACGGATTATGAGAATCGCCTACGCGGGGTGGGCCCTGTACACGCTCATG
GCCTTCCTCCAGGCCGCGACGGACGGCGTGAAAGTCTTCACTAGGACGAA
GGATCCCCGTCTCAACTACTCTCGGGGTTTTCCGGGTAGTTCTGGGAGTC
AGGAACCTCCGGGACTTGGTCGGCTGTTTCTCCTTCCGTACGGATTATTT
CCTGCTATGTCAGTCGGTGGTGCGGGCATGCCCGCTGTTGCGCATCGGCT
GGTGCCGCAGTTCGCACGGCCATCTTTGGAATTCCCGGGTGTAGAGGGTT
ACTATCCGCTCGGGTTCATGGATCCGAGCAAGCAGCCGGACGACGAGGAT
GCTGTCATGCATCCGTCCAGAAACCAGAAGACCACTCGGGCGTTGCCGTC
GCCAACGTCCAAGGAGGTCGGAATTCAGACGCCTTCAGGGGGTGTAGAGG
AGCAGGAAGCCTTCCAACGCTTACGGGAGCGCTGCCTGGCGGCGCATTAA
back to top