Ggra1780.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1780.t1
Unique Name	Ggra1780.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	754

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:605537..607798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps268500
PFAMs	HATPase_c_3,HSP90
Max annot lvl	2836\|Bacillariophyta
Evalue	1.07e-215
EggNOG OGs	COG0326@1\|root,KOG0019@2759\|Eukaryota,2XA9R@2836\|Bacillariophyta
Description	Hsp90 protein
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1780	Ggra1780	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 605537..607798 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1780.t1.stop1	Ggra1780.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 605537..605539 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1780.t1.CDS1	Ggra1780.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 605537..607798 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1780.t1.exon1	Ggra1780.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 605537..607798 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1780.t1.start1	Ggra1780.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 607796..607798 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1780.t1	Ggra1780.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 605537..607798 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:605537..607798-
coding sequence from alignment at tig00000050_pilon:605537..607798-

mRNA sequence

>Ggra1780.t1 ID=Ggra1780.t1|Name=Ggra1780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=754bp
MAAEAVAEPATPSSETFEFQAEVSRVMNLIINSLYSNKEVFLRELVSNAS
DACDKKRFLSLSAGSGVASPEIYVKADKEAGTVTIEDNGVGMTRKELINN
LGSIATSGTSKFLDAIGNNSSNDVSLIGQFGVGFYSAYLVADQVTVVSKS
FSDPNAKQYRWASSASNSFTISEDDSEPLKGGSGTRIILHVKEGCKEFLE
NFKLIELMKRYSEFIQFPVFGWESRTEFDEVPDGDEKDEEGKQKMKRVPR
TEEEWSQVNKVKPLWMRKPKEVTESEYEEFYKTIARDYNPPLGHTHFAVE
GDVEFRALLFCPKTLPPEFRQNMFPDEGRQLRLYVKRVFISDNFEDILPR
WLCFLRGVIDSEDLPLNVSREILQKSRVLRIISKRLVRKAVDMFKAIKKR
DNDDFEKFWDQFGRYLKAGIIEEREHFKELAKLALWSSTNSMDKLTDLAS
YVSRMKENQKVIYYVAAESRAAGESAPAMERLRKLGYEVLFLLEPVDEIA
VQNIGSFEGKRNADDKEDNSFKFVDVSKEDLDLEDLKSEEEKEQDKVLAE
DFKAVCEYMTTLLSDKVGKVQTSDRLTESVSTITQSSFGISPTMERYMRE
VGASTPNDPGMASFMAKARTLDINPRHPIVKDIKTQLEGAAGDSNQLKQT
CTLVYELALLTAGFPLTDINKFAKRVSSLVSPNVEAPEVVIPPKQEPAPS
LADEPAGVTAKELEEKIKNLSDEAGVEMDMSKLNIEDGKSEEKVQKADTE
IVE*

spliced messenger RNA

>Ggra1780.t1 ID=Ggra1780.t1|Name=Ggra1780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000050_pilon:605537..607798- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGAGGCTGTGGCCGAACCTGCCACCCCTTCCTCGGAGACGTT
TGAGTTCCAAGCAGAGGTCAGTCGTGTCATGAATCTCATCATCAACTCAT
TGTATTCCAACAAGGAAGTCTTCCTTCGTGAGCTCGTCAGTAATGCTTCA
GATGCATGTGACAAGAAGCGCTTCCTGTCTCTTAGTGCTGGATCTGGCGT
TGCTTCTCCAGAAATATATGTTAAGGCTGACAAGGAGGCTGGTACTGTCA
CCATTGAGGATAATGGCGTCGGTATGACTCGCAAGGAGTTGATTAACAAT
CTTGGATCTATTGCAACCTCTGGAACTTCAAAATTCCTGGACGCCATTGG
CAACAACTCATCCAATGATGTTTCGCTCATTGGTCAGTTTGGAGTTGGCT
TTTATTCAGCATATCTCGTTGCTGATCAAGTCACTGTGGTCTCAAAGTCG
TTCTCTGACCCCAACGCTAAGCAATACCGCTGGGCGTCTTCTGCCAGCAA
CTCATTCACAATCTCTGAAGACGATTCTGAACCCCTCAAGGGTGGTTCAG
GCACTCGTATTATCCTTCACGTTAAGGAAGGATGCAAAGAGTTCCTGGAG
AACTTCAAGCTTATTGAGCTCATGAAGCGGTATTCTGAGTTCATCCAGTT
CCCTGTCTTCGGCTGGGAGAGTCGCACTGAGTTCGATGAAGTCCCAGATG
GCGACGAAAAGGATGAAGAGGGCAAGCAGAAAATGAAGCGCGTCCCACGG
ACTGAGGAAGAGTGGAGTCAAGTCAACAAGGTTAAGCCCCTTTGGATGCG
TAAGCCCAAAGAAGTCACAGAGAGTGAGTATGAGGAGTTCTACAAGACAA
TTGCTCGTGATTACAACCCACCTTTGGGGCATACCCATTTTGCTGTTGAG
GGTGATGTCGAGTTCCGTGCATTATTGTTTTGTCCGAAGACGCTTCCACC
GGAATTCCGTCAGAACATGTTCCCCGACGAAGGCCGTCAACTCAGGCTTT
ATGTCAAGCGAGTGTTCATCTCTGATAACTTTGAAGACATTTTGCCCAGA
TGGCTGTGTTTCTTGAGAGGGGTTATTGACTCAGAGGATCTGCCATTGAA
CGTCAGTCGTGAAATATTGCAGAAGAGCCGCGTTCTTCGAATCATCTCCA
AGCGATTGGTAAGGAAGGCAGTCGACATGTTCAAGGCTATCAAGAAACGC
GATAACGATGACTTCGAGAAGTTCTGGGACCAGTTTGGACGCTATCTGAA
GGCTGGTATTATTGAAGAGCGTGAACATTTCAAAGAACTTGCCAAGCTAG
CTCTGTGGTCGTCTACAAACAGCATGGACAAGCTTACTGATCTCGCAAGT
TACGTATCGAGGATGAAGGAAAATCAGAAAGTAATCTACTATGTAGCTGC
GGAATCCCGAGCTGCCGGAGAATCAGCTCCGGCAATGGAACGTCTTCGTA
AGCTCGGTTACGAGGTCTTGTTCCTCTTGGAGCCAGTCGATGAAATTGCA
GTGCAAAATATCGGTTCATTCGAAGGGAAGCGTAACGCGGACGATAAAGA
GGATAACTCGTTTAAGTTTGTTGACGTTTCCAAAGAAGATCTGGATCTCG
AGGATCTGAAGTCTGAAGAAGAGAAGGAGCAAGACAAGGTACTTGCAGAA
GACTTCAAGGCGGTTTGTGAGTACATGACCACATTGCTTTCGGACAAGGT
TGGAAAGGTGCAAACCAGTGACCGCTTGACAGAGTCTGTTTCCACAATTA
CCCAGTCCTCTTTTGGTATATCTCCAACTATGGAAAGGTACATGAGAGAA
GTCGGTGCAAGTACCCCGAATGATCCTGGAATGGCCTCTTTCATGGCTAA
GGCTCGCACACTTGACATCAATCCAAGGCACCCGATTGTCAAAGACATCA
AGACTCAGTTAGAAGGTGCTGCCGGAGATAGTAACCAGTTGAAGCAGACT
TGCACTCTTGTCTATGAACTTGCCCTTCTCACAGCTGGATTCCCGCTCAC
TGACATCAACAAATTTGCTAAGCGTGTGAGCTCCCTTGTGTCGCCGAACG
TTGAAGCCCCAGAGGTTGTGATTCCTCCGAAACAAGAACCCGCTCCATCC
CTCGCAGATGAACCAGCTGGAGTTACTGCTAAGGAGCTAGAAGAGAAAAT
TAAGAATCTTTCCGATGAAGCTGGAGTTGAAATGGATATGAGCAAGCTTA
ATATCGAGGATGGGAAGAGTGAGGAGAAGGTGCAAAAGGCGGACACAGAG
ATCGTTGAATGA

protein sequence of Ggra1780.t1

>Ggra1780.t1 ID=Ggra1780.t1|Name=Ggra1780.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=754bp
MAAEAVAEPATPSSETFEFQAEVSRVMNLIINSLYSNKEVFLRELVSNAS
DACDKKRFLSLSAGSGVASPEIYVKADKEAGTVTIEDNGVGMTRKELINN
LGSIATSGTSKFLDAIGNNSSNDVSLIGQFGVGFYSAYLVADQVTVVSKS
FSDPNAKQYRWASSASNSFTISEDDSEPLKGGSGTRIILHVKEGCKEFLE
NFKLIELMKRYSEFIQFPVFGWESRTEFDEVPDGDEKDEEGKQKMKRVPR
TEEEWSQVNKVKPLWMRKPKEVTESEYEEFYKTIARDYNPPLGHTHFAVE
GDVEFRALLFCPKTLPPEFRQNMFPDEGRQLRLYVKRVFISDNFEDILPR
WLCFLRGVIDSEDLPLNVSREILQKSRVLRIISKRLVRKAVDMFKAIKKR
DNDDFEKFWDQFGRYLKAGIIEEREHFKELAKLALWSSTNSMDKLTDLAS
YVSRMKENQKVIYYVAAESRAAGESAPAMERLRKLGYEVLFLLEPVDEIA
VQNIGSFEGKRNADDKEDNSFKFVDVSKEDLDLEDLKSEEEKEQDKVLAE
DFKAVCEYMTTLLSDKVGKVQTSDRLTESVSTITQSSFGISPTMERYMRE
VGASTPNDPGMASFMAKARTLDINPRHPIVKDIKTQLEGAAGDSNQLKQT
CTLVYELALLTAGFPLTDINKFAKRVSSLVSPNVEAPEVVIPPKQEPAPS
LADEPAGVTAKELEEKIKNLSDEAGVEMDMSKLNIEDGKSEEKVQKADTE
IVE*

mRNA from alignment at tig00000050_pilon:605537..607798-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1780.t1 ID=Ggra1780.t1|Name=Ggra1780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000050_pilon:605537..607798- (Gracilaria gracilis GNS1m male)
ATGGCCGCTGAGGCTGTGGCCGAACCTGCCACCCCTTCCTCGGAGACGTT
TGAGTTCCAAGCAGAGGTCAGTCGTGTCATGAATCTCATCATCAACTCAT
TGTATTCCAACAAGGAAGTCTTCCTTCGTGAGCTCGTCAGTAATGCTTCA
GATGCATGTGACAAGAAGCGCTTCCTGTCTCTTAGTGCTGGATCTGGCGT
TGCTTCTCCAGAAATATATGTTAAGGCTGACAAGGAGGCTGGTACTGTCA
CCATTGAGGATAATGGCGTCGGTATGACTCGCAAGGAGTTGATTAACAAT
CTTGGATCTATTGCAACCTCTGGAACTTCAAAATTCCTGGACGCCATTGG
CAACAACTCATCCAATGATGTTTCGCTCATTGGTCAGTTTGGAGTTGGCT
TTTATTCAGCATATCTCGTTGCTGATCAAGTCACTGTGGTCTCAAAGTCG
TTCTCTGACCCCAACGCTAAGCAATACCGCTGGGCGTCTTCTGCCAGCAA
CTCATTCACAATCTCTGAAGACGATTCTGAACCCCTCAAGGGTGGTTCAG
GCACTCGTATTATCCTTCACGTTAAGGAAGGATGCAAAGAGTTCCTGGAG
AACTTCAAGCTTATTGAGCTCATGAAGCGGTATTCTGAGTTCATCCAGTT
CCCTGTCTTCGGCTGGGAGAGTCGCACTGAGTTCGATGAAGTCCCAGATG
GCGACGAAAAGGATGAAGAGGGCAAGCAGAAAATGAAGCGCGTCCCACGG
ACTGAGGAAGAGTGGAGTCAAGTCAACAAGGTTAAGCCCCTTTGGATGCG
TAAGCCCAAAGAAGTCACAGAGAGTGAGTATGAGGAGTTCTACAAGACAA
TTGCTCGTGATTACAACCCACCTTTGGGGCATACCCATTTTGCTGTTGAG
GGTGATGTCGAGTTCCGTGCATTATTGTTTTGTCCGAAGACGCTTCCACC
GGAATTCCGTCAGAACATGTTCCCCGACGAAGGCCGTCAACTCAGGCTTT
ATGTCAAGCGAGTGTTCATCTCTGATAACTTTGAAGACATTTTGCCCAGA
TGGCTGTGTTTCTTGAGAGGGGTTATTGACTCAGAGGATCTGCCATTGAA
CGTCAGTCGTGAAATATTGCAGAAGAGCCGCGTTCTTCGAATCATCTCCA
AGCGATTGGTAAGGAAGGCAGTCGACATGTTCAAGGCTATCAAGAAACGC
GATAACGATGACTTCGAGAAGTTCTGGGACCAGTTTGGACGCTATCTGAA
GGCTGGTATTATTGAAGAGCGTGAACATTTCAAAGAACTTGCCAAGCTAG
CTCTGTGGTCGTCTACAAACAGCATGGACAAGCTTACTGATCTCGCAAGT
TACGTATCGAGGATGAAGGAAAATCAGAAAGTAATCTACTATGTAGCTGC
GGAATCCCGAGCTGCCGGAGAATCAGCTCCGGCAATGGAACGTCTTCGTA
AGCTCGGTTACGAGGTCTTGTTCCTCTTGGAGCCAGTCGATGAAATTGCA
GTGCAAAATATCGGTTCATTCGAAGGGAAGCGTAACGCGGACGATAAAGA
GGATAACTCGTTTAAGTTTGTTGACGTTTCCAAAGAAGATCTGGATCTCG
AGGATCTGAAGTCTGAAGAAGAGAAGGAGCAAGACAAGGTACTTGCAGAA
GACTTCAAGGCGGTTTGTGAGTACATGACCACATTGCTTTCGGACAAGGT
TGGAAAGGTGCAAACCAGTGACCGCTTGACAGAGTCTGTTTCCACAATTA
CCCAGTCCTCTTTTGGTATATCTCCAACTATGGAAAGGTACATGAGAGAA
GTCGGTGCAAGTACCCCGAATGATCCTGGAATGGCCTCTTTCATGGCTAA
GGCTCGCACACTTGACATCAATCCAAGGCACCCGATTGTCAAAGACATCA
AGACTCAGTTAGAAGGTGCTGCCGGAGATAGTAACCAGTTGAAGCAGACT
TGCACTCTTGTCTATGAACTTGCCCTTCTCACAGCTGGATTCCCGCTCAC
TGACATCAACAAATTTGCTAAGCGTGTGAGCTCCCTTGTGTCGCCGAACG
TTGAAGCCCCAGAGGTTGTGATTCCTCCGAAACAAGAACCCGCTCCATCC
CTCGCAGATGAACCAGCTGGAGTTACTGCTAAGGAGCTAGAAGAGAAAAT
TAAGAATCTTTCCGATGAAGCTGGAGTTGAAATGGATATGAGCAAGCTTA
ATATCGAGGATGGGAAGAGTGAGGAGAAGGTGCAAAAGGCGGACACAGAG
ATCGTTGAATGA

Coding sequence (CDS) from alignment at tig00000050_pilon:605537..607798-

>Ggra1780.t1 ID=Ggra1780.t1|Name=Ggra1780.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2262bp|location=Sequence derived from alignment at tig00000050_pilon:605537..607798- (Gracilaria gracilis GNS1m male)
ATGGCCGCTGAGGCTGTGGCCGAACCTGCCACCCCTTCCTCGGAGACGTT
TGAGTTCCAAGCAGAGGTCAGTCGTGTCATGAATCTCATCATCAACTCAT
TGTATTCCAACAAGGAAGTCTTCCTTCGTGAGCTCGTCAGTAATGCTTCA
GATGCATGTGACAAGAAGCGCTTCCTGTCTCTTAGTGCTGGATCTGGCGT
TGCTTCTCCAGAAATATATGTTAAGGCTGACAAGGAGGCTGGTACTGTCA
CCATTGAGGATAATGGCGTCGGTATGACTCGCAAGGAGTTGATTAACAAT
CTTGGATCTATTGCAACCTCTGGAACTTCAAAATTCCTGGACGCCATTGG
CAACAACTCATCCAATGATGTTTCGCTCATTGGTCAGTTTGGAGTTGGCT
TTTATTCAGCATATCTCGTTGCTGATCAAGTCACTGTGGTCTCAAAGTCG
TTCTCTGACCCCAACGCTAAGCAATACCGCTGGGCGTCTTCTGCCAGCAA
CTCATTCACAATCTCTGAAGACGATTCTGAACCCCTCAAGGGTGGTTCAG
GCACTCGTATTATCCTTCACGTTAAGGAAGGATGCAAAGAGTTCCTGGAG
AACTTCAAGCTTATTGAGCTCATGAAGCGGTATTCTGAGTTCATCCAGTT
CCCTGTCTTCGGCTGGGAGAGTCGCACTGAGTTCGATGAAGTCCCAGATG
GCGACGAAAAGGATGAAGAGGGCAAGCAGAAAATGAAGCGCGTCCCACGG
ACTGAGGAAGAGTGGAGTCAAGTCAACAAGGTTAAGCCCCTTTGGATGCG
TAAGCCCAAAGAAGTCACAGAGAGTGAGTATGAGGAGTTCTACAAGACAA
TTGCTCGTGATTACAACCCACCTTTGGGGCATACCCATTTTGCTGTTGAG
GGTGATGTCGAGTTCCGTGCATTATTGTTTTGTCCGAAGACGCTTCCACC
GGAATTCCGTCAGAACATGTTCCCCGACGAAGGCCGTCAACTCAGGCTTT
ATGTCAAGCGAGTGTTCATCTCTGATAACTTTGAAGACATTTTGCCCAGA
TGGCTGTGTTTCTTGAGAGGGGTTATTGACTCAGAGGATCTGCCATTGAA
CGTCAGTCGTGAAATATTGCAGAAGAGCCGCGTTCTTCGAATCATCTCCA
AGCGATTGGTAAGGAAGGCAGTCGACATGTTCAAGGCTATCAAGAAACGC
GATAACGATGACTTCGAGAAGTTCTGGGACCAGTTTGGACGCTATCTGAA
GGCTGGTATTATTGAAGAGCGTGAACATTTCAAAGAACTTGCCAAGCTAG
CTCTGTGGTCGTCTACAAACAGCATGGACAAGCTTACTGATCTCGCAAGT
TACGTATCGAGGATGAAGGAAAATCAGAAAGTAATCTACTATGTAGCTGC
GGAATCCCGAGCTGCCGGAGAATCAGCTCCGGCAATGGAACGTCTTCGTA
AGCTCGGTTACGAGGTCTTGTTCCTCTTGGAGCCAGTCGATGAAATTGCA
GTGCAAAATATCGGTTCATTCGAAGGGAAGCGTAACGCGGACGATAAAGA
GGATAACTCGTTTAAGTTTGTTGACGTTTCCAAAGAAGATCTGGATCTCG
AGGATCTGAAGTCTGAAGAAGAGAAGGAGCAAGACAAGGTACTTGCAGAA
GACTTCAAGGCGGTTTGTGAGTACATGACCACATTGCTTTCGGACAAGGT
TGGAAAGGTGCAAACCAGTGACCGCTTGACAGAGTCTGTTTCCACAATTA
CCCAGTCCTCTTTTGGTATATCTCCAACTATGGAAAGGTACATGAGAGAA
GTCGGTGCAAGTACCCCGAATGATCCTGGAATGGCCTCTTTCATGGCTAA
GGCTCGCACACTTGACATCAATCCAAGGCACCCGATTGTCAAAGACATCA
AGACTCAGTTAGAAGGTGCTGCCGGAGATAGTAACCAGTTGAAGCAGACT
TGCACTCTTGTCTATGAACTTGCCCTTCTCACAGCTGGATTCCCGCTCAC
TGACATCAACAAATTTGCTAAGCGTGTGAGCTCCCTTGTGTCGCCGAACG
TTGAAGCCCCAGAGGTTGTGATTCCTCCGAAACAAGAACCCGCTCCATCC
CTCGCAGATGAACCAGCTGGAGTTACTGCTAAGGAGCTAGAAGAGAAAAT
TAAGAATCTTTCCGATGAAGCTGGAGTTGAAATGGATATGAGCAAGCTTA
ATATCGAGGATGGGAAGAGTGAGGAGAAGGTGCAAAAGGCGGACACAGAG
ATCGTTGAATGA