Ggra1700.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1700.t1
Unique NameGgra1700.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:402465..402893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EFO25485.1
Preferred nameTXNL4A
PFAMsDIM1
Max annot lvl33208|Metazoa
KEGG koko:K12859
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
Evalue2.01e-63
EggNOG OGsKOG3414@1|root,KOG3414@2759|Eukaryota,39ZUC@33154|Opisthokonta,3BAI4@33208|Metazoa,3CXF0@33213|Bilateria,40CUT@6231|Nematoda,1KVEC@119089|Chromadorea
DescriptionMitosis protein DIM1
COG categoryAD
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1700Ggra1700Gracilaria gracilis GNS1m malegenetig00000050_pilon 402465..402893 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1700.t1.start1Ggra1700.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 402465..402467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1700.t1.CDS1Ggra1700.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 402465..402893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1700.t1.exon1Ggra1700.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 402465..402893 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1700.t1.stop1Ggra1700.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 402891..402893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1700.t1Ggra1700.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 402465..402893 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1700.t1 ID=Ggra1700.t1|Name=Ggra1700.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=143bp
MSYLLPHLDSEEDVNKALQTEQERVVLIRWGTDADPTCMIMDETLYNVAE
LVKNFAVIYLVDITHVTAFNENFKLTDPCSVMFFHRDKHIMVDMGTGNNN
KITFPITDEQDLIDIMEVVFRGARKGRGLVTAPKDYSTRAYN*
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spliced messenger RNA

>Ggra1700.t1 ID=Ggra1700.t1|Name=Ggra1700.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000050_pilon:402465..402893+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACTTGCTCCCTCACCTGGACTCCGAGGAAGATGTCAACAAGGC
GCTACAAACTGAACAAGAGAGAGTTGTGCTAATTCGCTGGGGCACCGATG
CCGATCCCACCTGCATGATAATGGACGAAACGCTCTACAACGTAGCAGAG
CTAGTCAAGAACTTTGCAGTCATTTATCTCGTCGATATTACTCACGTCAC
AGCTTTTAACGAGAATTTCAAGCTCACAGACCCTTGTTCCGTCATGTTCT
TCCACAGAGATAAGCACATCATGGTTGATATGGGTACTGGTAACAACAAC
AAGATAACATTTCCAATCACCGATGAGCAGGACCTTATCGACATAATGGA
AGTAGTCTTCCGCGGCGCGCGCAAGGGAAGAGGTTTAGTAACTGCTCCAA
AGGACTATAGCACAAGGGCTTATAATTGA
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protein sequence of Ggra1700.t1

>Ggra1700.t1 ID=Ggra1700.t1|Name=Ggra1700.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=143bp
MSYLLPHLDSEEDVNKALQTEQERVVLIRWGTDADPTCMIMDETLYNVAE
LVKNFAVIYLVDITHVTAFNENFKLTDPCSVMFFHRDKHIMVDMGTGNNN
KITFPITDEQDLIDIMEVVFRGARKGRGLVTAPKDYSTRAYN*
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mRNA from alignment at tig00000050_pilon:402465..402893+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1700.t1 ID=Ggra1700.t1|Name=Ggra1700.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000050_pilon:402465..402893+ (Gracilaria gracilis GNS1m male)
ATGTCGTACTTGCTCCCTCACCTGGACTCCGAGGAAGATGTCAACAAGGC
GCTACAAACTGAACAAGAGAGAGTTGTGCTAATTCGCTGGGGCACCGATG
CCGATCCCACCTGCATGATAATGGACGAAACGCTCTACAACGTAGCAGAG
CTAGTCAAGAACTTTGCAGTCATTTATCTCGTCGATATTACTCACGTCAC
AGCTTTTAACGAGAATTTCAAGCTCACAGACCCTTGTTCCGTCATGTTCT
TCCACAGAGATAAGCACATCATGGTTGATATGGGTACTGGTAACAACAAC
AAGATAACATTTCCAATCACCGATGAGCAGGACCTTATCGACATAATGGA
AGTAGTCTTCCGCGGCGCGCGCAAGGGAAGAGGTTTAGTAACTGCTCCAA
AGGACTATAGCACAAGGGCTTATAATTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:402465..402893+

>Ggra1700.t1 ID=Ggra1700.t1|Name=Ggra1700.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=429bp|location=Sequence derived from alignment at tig00000050_pilon:402465..402893+ (Gracilaria gracilis GNS1m male)
ATGTCGTACTTGCTCCCTCACCTGGACTCCGAGGAAGATGTCAACAAGGC
GCTACAAACTGAACAAGAGAGAGTTGTGCTAATTCGCTGGGGCACCGATG
CCGATCCCACCTGCATGATAATGGACGAAACGCTCTACAACGTAGCAGAG
CTAGTCAAGAACTTTGCAGTCATTTATCTCGTCGATATTACTCACGTCAC
AGCTTTTAACGAGAATTTCAAGCTCACAGACCCTTGTTCCGTCATGTTCT
TCCACAGAGATAAGCACATCATGGTTGATATGGGTACTGGTAACAACAAC
AAGATAACATTTCCAATCACCGATGAGCAGGACCTTATCGACATAATGGA
AGTAGTCTTCCGCGGCGCGCGCAAGGGAAGAGGTTTAGTAACTGCTCCAA
AGGACTATAGCACAAGGGCTTATAATTGA
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