Ggra1801.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1801.t1
Unique NameGgra1801.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:660729..662174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272952.HpaP811064
PFAMsDHFR_1,Thymidylat_synt
Max annot lvl4776|Peronosporales
KEGG rclassRC00109,RC00110,RC00158,RC00219,RC00332
KEGG koko:K13998
KEGG ReactionR00936,R00937,R00939,R00940,R02101,R02235,R02236
KEGG Pathwayko00240,ko00670,ko00790,ko01100,map00240,map00670,map00790,map01100
KEGG ModuleM00053,M00126,M00841
Evalue1.12e-180
EggNOG OGsCOG0207@1|root,COG0262@1|root,KOG0673@2759|Eukaryota,KOG1324@2759|Eukaryota,3QDB3@4776|Peronosporales
EC1.5.1.3,2.1.1.45
DescriptionBifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1801Ggra1801Gracilaria gracilis GNS1m malegenetig00000050_pilon 660729..662174 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1801.t1.stop1Ggra1801.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 660729..660731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1801.t1.CDS1Ggra1801.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 660729..662174 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1801.t1.exon1Ggra1801.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 660729..662174 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1801.t1.start1Ggra1801.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 662172..662174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1801.t1Ggra1801.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 660729..662174 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1801.t1 ID=Ggra1801.t1|Name=Ggra1801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp
MVSEHVLEGRLVAAVCKRSNGIGYEGRLPWPHLSQDMRFFRELTMGSAVL
MGSTTYFSIPEKFRPLPGRLNIVLSSRTRDELKFPDSVLIAGSMDAVSQL
LKSRNIKVVYVIGGESVYREVLRHPHWSSRIYLTEIDAEFKVDRHFPLEL
DSKTSPFTAVSISADVEENGVKYRMKEYIRNPPSAQNQVLPETKQVHEEY
QYLNLVRRILNEGVQKGDRTGTGTLSVFGAQMRFSLRKSFPLLTTKRVFW
RGVAEELFWFIRGGTNGNELSEKGVHIWDGNGSRDFLDSRGLSKREVGDL
GPIYGFQWRHFGAEYFDMHTNYDGKGTDQLRDVIETIKKNPNDRRILLSA
WNPAATAKMALPPCHLLAQFYVANGELSCQMYQRSCDMGLGVPFNIASYS
LLTCLIAKVTGLTPGDFVHVLGDAHVYLNHVEPLREQLKRTPRPFPTLMI
RQRDQIEDFCFEDLELENYTPCKPLAMKMAV*
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spliced messenger RNA

>Ggra1801.t1 ID=Ggra1801.t1|Name=Ggra1801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000050_pilon:660729..662174- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAGCGAGCACGTTCTCGAAGGACGACTGGTCGCGGCGGTATGCAA
GAGAAGCAATGGTATTGGATACGAAGGACGTCTTCCTTGGCCTCATCTTT
CGCAAGACATGCGTTTCTTCAGGGAACTAACTATGGGCTCTGCCGTTCTT
ATGGGTTCTACTACATATTTTTCCATCCCGGAGAAGTTTAGACCACTGCC
CGGTCGCCTTAATATTGTTCTGTCCTCAAGGACTCGCGATGAACTGAAAT
TTCCGGACTCAGTGTTAATCGCTGGTTCTATGGACGCTGTTTCCCAACTA
CTCAAATCGCGAAATATCAAAGTCGTATATGTTATTGGAGGCGAATCTGT
CTACAGGGAGGTTCTACGCCATCCGCACTGGTCTTCCAGGATTTACTTGA
CAGAAATTGACGCAGAATTTAAAGTAGACAGACACTTTCCTTTGGAATTG
GATTCAAAGACTTCCCCATTCACGGCGGTATCCATTTCTGCCGATGTTGA
AGAAAACGGTGTCAAGTACCGGATGAAAGAATATATTCGCAATCCTCCCT
CGGCACAGAACCAAGTGCTTCCAGAGACTAAGCAGGTACATGAGGAGTAT
CAGTATCTAAATCTGGTGCGACGCATCTTGAACGAAGGCGTTCAAAAAGG
AGACCGTACGGGAACCGGGACGCTTTCGGTCTTTGGAGCTCAGATGCGGT
TTAGTCTTCGCAAGTCCTTCCCCCTGCTCACCACAAAGAGGGTGTTTTGG
CGCGGTGTAGCAGAAGAGCTGTTCTGGTTTATAAGAGGGGGTACAAATGG
TAATGAGCTCTCAGAAAAAGGTGTTCATATTTGGGATGGGAACGGCTCGA
GGGACTTTTTAGATTCTCGTGGGCTTTCCAAGCGTGAAGTGGGAGACTTG
GGTCCTATTTATGGCTTTCAATGGCGGCACTTTGGAGCCGAGTACTTCGA
TATGCACACAAATTATGACGGAAAGGGAACGGATCAGTTGAGGGATGTCA
TCGAAACCATCAAGAAAAACCCCAACGACCGTCGGATTCTTCTCTCCGCA
TGGAATCCAGCAGCCACGGCAAAAATGGCTCTTCCTCCATGTCATCTATT
AGCGCAGTTCTATGTGGCAAATGGAGAGCTTTCATGTCAAATGTATCAAC
GTTCGTGCGATATGGGACTCGGCGTGCCCTTCAATATCGCATCCTATTCA
TTGTTGACTTGCCTTATTGCTAAAGTAACCGGTCTAACTCCTGGTGACTT
CGTTCATGTTTTGGGTGATGCACATGTTTATCTGAATCATGTTGAACCCC
TTCGAGAGCAGTTGAAACGGACGCCAAGGCCTTTTCCCACTCTTATGATC
CGGCAACGAGATCAGATTGAAGATTTCTGTTTTGAGGATTTGGAGCTTGA
GAATTATACGCCCTGTAAACCTCTAGCAATGAAAATGGCCGTGTGA
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protein sequence of Ggra1801.t1

>Ggra1801.t1 ID=Ggra1801.t1|Name=Ggra1801.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=482bp
MVSEHVLEGRLVAAVCKRSNGIGYEGRLPWPHLSQDMRFFRELTMGSAVL
MGSTTYFSIPEKFRPLPGRLNIVLSSRTRDELKFPDSVLIAGSMDAVSQL
LKSRNIKVVYVIGGESVYREVLRHPHWSSRIYLTEIDAEFKVDRHFPLEL
DSKTSPFTAVSISADVEENGVKYRMKEYIRNPPSAQNQVLPETKQVHEEY
QYLNLVRRILNEGVQKGDRTGTGTLSVFGAQMRFSLRKSFPLLTTKRVFW
RGVAEELFWFIRGGTNGNELSEKGVHIWDGNGSRDFLDSRGLSKREVGDL
GPIYGFQWRHFGAEYFDMHTNYDGKGTDQLRDVIETIKKNPNDRRILLSA
WNPAATAKMALPPCHLLAQFYVANGELSCQMYQRSCDMGLGVPFNIASYS
LLTCLIAKVTGLTPGDFVHVLGDAHVYLNHVEPLREQLKRTPRPFPTLMI
RQRDQIEDFCFEDLELENYTPCKPLAMKMAV*
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mRNA from alignment at tig00000050_pilon:660729..662174-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1801.t1 ID=Ggra1801.t1|Name=Ggra1801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000050_pilon:660729..662174- (Gracilaria gracilis GNS1m male)
ATGGTTAGCGAGCACGTTCTCGAAGGACGACTGGTCGCGGCGGTATGCAA
GAGAAGCAATGGTATTGGATACGAAGGACGTCTTCCTTGGCCTCATCTTT
CGCAAGACATGCGTTTCTTCAGGGAACTAACTATGGGCTCTGCCGTTCTT
ATGGGTTCTACTACATATTTTTCCATCCCGGAGAAGTTTAGACCACTGCC
CGGTCGCCTTAATATTGTTCTGTCCTCAAGGACTCGCGATGAACTGAAAT
TTCCGGACTCAGTGTTAATCGCTGGTTCTATGGACGCTGTTTCCCAACTA
CTCAAATCGCGAAATATCAAAGTCGTATATGTTATTGGAGGCGAATCTGT
CTACAGGGAGGTTCTACGCCATCCGCACTGGTCTTCCAGGATTTACTTGA
CAGAAATTGACGCAGAATTTAAAGTAGACAGACACTTTCCTTTGGAATTG
GATTCAAAGACTTCCCCATTCACGGCGGTATCCATTTCTGCCGATGTTGA
AGAAAACGGTGTCAAGTACCGGATGAAAGAATATATTCGCAATCCTCCCT
CGGCACAGAACCAAGTGCTTCCAGAGACTAAGCAGGTACATGAGGAGTAT
CAGTATCTAAATCTGGTGCGACGCATCTTGAACGAAGGCGTTCAAAAAGG
AGACCGTACGGGAACCGGGACGCTTTCGGTCTTTGGAGCTCAGATGCGGT
TTAGTCTTCGCAAGTCCTTCCCCCTGCTCACCACAAAGAGGGTGTTTTGG
CGCGGTGTAGCAGAAGAGCTGTTCTGGTTTATAAGAGGGGGTACAAATGG
TAATGAGCTCTCAGAAAAAGGTGTTCATATTTGGGATGGGAACGGCTCGA
GGGACTTTTTAGATTCTCGTGGGCTTTCCAAGCGTGAAGTGGGAGACTTG
GGTCCTATTTATGGCTTTCAATGGCGGCACTTTGGAGCCGAGTACTTCGA
TATGCACACAAATTATGACGGAAAGGGAACGGATCAGTTGAGGGATGTCA
TCGAAACCATCAAGAAAAACCCCAACGACCGTCGGATTCTTCTCTCCGCA
TGGAATCCAGCAGCCACGGCAAAAATGGCTCTTCCTCCATGTCATCTATT
AGCGCAGTTCTATGTGGCAAATGGAGAGCTTTCATGTCAAATGTATCAAC
GTTCGTGCGATATGGGACTCGGCGTGCCCTTCAATATCGCATCCTATTCA
TTGTTGACTTGCCTTATTGCTAAAGTAACCGGTCTAACTCCTGGTGACTT
CGTTCATGTTTTGGGTGATGCACATGTTTATCTGAATCATGTTGAACCCC
TTCGAGAGCAGTTGAAACGGACGCCAAGGCCTTTTCCCACTCTTATGATC
CGGCAACGAGATCAGATTGAAGATTTCTGTTTTGAGGATTTGGAGCTTGA
GAATTATACGCCCTGTAAACCTCTAGCAATGAAAATGGCCGTGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:660729..662174-

>Ggra1801.t1 ID=Ggra1801.t1|Name=Ggra1801.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00000050_pilon:660729..662174- (Gracilaria gracilis GNS1m male)
ATGGTTAGCGAGCACGTTCTCGAAGGACGACTGGTCGCGGCGGTATGCAA
GAGAAGCAATGGTATTGGATACGAAGGACGTCTTCCTTGGCCTCATCTTT
CGCAAGACATGCGTTTCTTCAGGGAACTAACTATGGGCTCTGCCGTTCTT
ATGGGTTCTACTACATATTTTTCCATCCCGGAGAAGTTTAGACCACTGCC
CGGTCGCCTTAATATTGTTCTGTCCTCAAGGACTCGCGATGAACTGAAAT
TTCCGGACTCAGTGTTAATCGCTGGTTCTATGGACGCTGTTTCCCAACTA
CTCAAATCGCGAAATATCAAAGTCGTATATGTTATTGGAGGCGAATCTGT
CTACAGGGAGGTTCTACGCCATCCGCACTGGTCTTCCAGGATTTACTTGA
CAGAAATTGACGCAGAATTTAAAGTAGACAGACACTTTCCTTTGGAATTG
GATTCAAAGACTTCCCCATTCACGGCGGTATCCATTTCTGCCGATGTTGA
AGAAAACGGTGTCAAGTACCGGATGAAAGAATATATTCGCAATCCTCCCT
CGGCACAGAACCAAGTGCTTCCAGAGACTAAGCAGGTACATGAGGAGTAT
CAGTATCTAAATCTGGTGCGACGCATCTTGAACGAAGGCGTTCAAAAAGG
AGACCGTACGGGAACCGGGACGCTTTCGGTCTTTGGAGCTCAGATGCGGT
TTAGTCTTCGCAAGTCCTTCCCCCTGCTCACCACAAAGAGGGTGTTTTGG
CGCGGTGTAGCAGAAGAGCTGTTCTGGTTTATAAGAGGGGGTACAAATGG
TAATGAGCTCTCAGAAAAAGGTGTTCATATTTGGGATGGGAACGGCTCGA
GGGACTTTTTAGATTCTCGTGGGCTTTCCAAGCGTGAAGTGGGAGACTTG
GGTCCTATTTATGGCTTTCAATGGCGGCACTTTGGAGCCGAGTACTTCGA
TATGCACACAAATTATGACGGAAAGGGAACGGATCAGTTGAGGGATGTCA
TCGAAACCATCAAGAAAAACCCCAACGACCGTCGGATTCTTCTCTCCGCA
TGGAATCCAGCAGCCACGGCAAAAATGGCTCTTCCTCCATGTCATCTATT
AGCGCAGTTCTATGTGGCAAATGGAGAGCTTTCATGTCAAATGTATCAAC
GTTCGTGCGATATGGGACTCGGCGTGCCCTTCAATATCGCATCCTATTCA
TTGTTGACTTGCCTTATTGCTAAAGTAACCGGTCTAACTCCTGGTGACTT
CGTTCATGTTTTGGGTGATGCACATGTTTATCTGAATCATGTTGAACCCC
TTCGAGAGCAGTTGAAACGGACGCCAAGGCCTTTTCCCACTCTTATGATC
CGGCAACGAGATCAGATTGAAGATTTCTGTTTTGAGGATTTGGAGCTTGA
GAATTATACGCCCTGTAAACCTCTAGCAATGAAAATGGCCGTGTGA
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