Ggra1773.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1773.t1
Unique NameGgra1773.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:592200..593258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53039
PFAMsNAD_binding_10
Max annot lvl2759|Eukaryota
Evalue1.73e-34
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1773Ggra1773Gracilaria gracilis GNS1m malegenetig00000050_pilon 592200..593258 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1773.t1.stop1Ggra1773.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 592200..592202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1773.t1.CDS1Ggra1773.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 592200..593258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1773.t1.exon1Ggra1773.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 592200..593258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1773.t1.start1Ggra1773.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 593256..593258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1773.t1Ggra1773.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 592200..593258 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1773.t1 ID=Ggra1773.t1|Name=Ggra1773.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MSLCFGVPCPVTQHRKRLLDEAQQIPPSKCHIKDRSHLRCSAEEPKSNPS
SRMRKRPTRKSSAFERTIEDLTMKRMGRGTIYYGPRATPDLSEQPTEADQ
NDVLKPDPILVTGATGRTGQWIALGLLNQDFNVRTFGRSYDRAEKLFGPS
GSNVDVFEGDLANYKEVLDAVDGSKAIVCASGAPRWLPGGFKAVDVTGVS
NLLKAACETGSVSRFVLISTIESSGARESAKREAERLLIDSGLSYVILRV
KKLEDSPGGVRDIVLTAESEPEVSATKINGISRVDLAQVVCQALAYERSI
AQLSDADPTSEFDFPSCIITAFNGKNPLVPDKRFWKREFNRISDTYREKP
LP*
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spliced messenger RNA

>Ggra1773.t1 ID=Ggra1773.t1|Name=Ggra1773.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000050_pilon:592200..593258- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTTTGTTTTGGAGTTCCGTGCCCGGTCACTCAGCATCGAAAACG
CCTGTTGGATGAAGCACAGCAAATCCCGCCAAGCAAATGTCATATCAAAG
ACCGATCTCATCTCAGATGCTCAGCAGAGGAGCCCAAAAGCAATCCATCC
TCACGTATGAGGAAGCGCCCCACCCGTAAATCTTCCGCCTTCGAACGTAC
AATTGAAGATCTTACCATGAAACGAATGGGTAGAGGAACAATTTACTACG
GGCCGCGAGCCACTCCCGATCTTTCTGAACAACCTACAGAAGCCGACCAA
AATGACGTTTTAAAGCCTGACCCTATTCTAGTCACAGGTGCTACAGGAAG
AACAGGACAATGGATCGCGCTTGGATTGCTTAATCAGGATTTTAACGTCC
GCACGTTTGGCCGTAGTTACGACAGGGCAGAAAAACTCTTCGGTCCCTCG
GGTTCCAACGTTGATGTCTTTGAGGGCGATCTTGCAAATTACAAGGAAGT
GCTCGATGCAGTTGATGGTAGCAAAGCTATCGTATGCGCTAGTGGTGCTC
CAAGGTGGTTGCCAGGCGGTTTTAAAGCCGTTGATGTAACCGGTGTGAGC
AATCTTCTTAAAGCAGCATGTGAGACAGGTTCAGTTTCAAGGTTTGTCCT
CATTAGCACTATCGAGTCATCAGGCGCCCGGGAATCCGCCAAAAGAGAAG
CCGAAAGGCTTTTGATTGACAGTGGTTTGTCGTACGTAATCCTTCGAGTG
AAAAAACTTGAGGACTCGCCGGGTGGAGTGCGAGATATTGTCCTCACTGC
TGAGTCAGAGCCGGAGGTTAGTGCTACAAAGATTAATGGCATTAGCAGAG
TGGACTTGGCGCAAGTTGTATGCCAAGCTCTTGCTTATGAACGTTCCATT
GCCCAATTGAGCGATGCAGATCCTACTTCTGAGTTTGACTTTCCTAGCTG
TATCATTACAGCTTTCAATGGAAAGAATCCTCTTGTTCCGGACAAACGAT
TTTGGAAACGGGAATTCAACCGTATAAGCGACACATACAGGGAAAAGCCC
CTACCCTGA
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protein sequence of Ggra1773.t1

>Ggra1773.t1 ID=Ggra1773.t1|Name=Ggra1773.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MSLCFGVPCPVTQHRKRLLDEAQQIPPSKCHIKDRSHLRCSAEEPKSNPS
SRMRKRPTRKSSAFERTIEDLTMKRMGRGTIYYGPRATPDLSEQPTEADQ
NDVLKPDPILVTGATGRTGQWIALGLLNQDFNVRTFGRSYDRAEKLFGPS
GSNVDVFEGDLANYKEVLDAVDGSKAIVCASGAPRWLPGGFKAVDVTGVS
NLLKAACETGSVSRFVLISTIESSGARESAKREAERLLIDSGLSYVILRV
KKLEDSPGGVRDIVLTAESEPEVSATKINGISRVDLAQVVCQALAYERSI
AQLSDADPTSEFDFPSCIITAFNGKNPLVPDKRFWKREFNRISDTYREKP
LP*
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mRNA from alignment at tig00000050_pilon:592200..593258-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1773.t1 ID=Ggra1773.t1|Name=Ggra1773.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000050_pilon:592200..593258- (Gracilaria gracilis GNS1m male)
ATGAGCCTTTGTTTTGGAGTTCCGTGCCCGGTCACTCAGCATCGAAAACG
CCTGTTGGATGAAGCACAGCAAATCCCGCCAAGCAAATGTCATATCAAAG
ACCGATCTCATCTCAGATGCTCAGCAGAGGAGCCCAAAAGCAATCCATCC
TCACGTATGAGGAAGCGCCCCACCCGTAAATCTTCCGCCTTCGAACGTAC
AATTGAAGATCTTACCATGAAACGAATGGGTAGAGGAACAATTTACTACG
GGCCGCGAGCCACTCCCGATCTTTCTGAACAACCTACAGAAGCCGACCAA
AATGACGTTTTAAAGCCTGACCCTATTCTAGTCACAGGTGCTACAGGAAG
AACAGGACAATGGATCGCGCTTGGATTGCTTAATCAGGATTTTAACGTCC
GCACGTTTGGCCGTAGTTACGACAGGGCAGAAAAACTCTTCGGTCCCTCG
GGTTCCAACGTTGATGTCTTTGAGGGCGATCTTGCAAATTACAAGGAAGT
GCTCGATGCAGTTGATGGTAGCAAAGCTATCGTATGCGCTAGTGGTGCTC
CAAGGTGGTTGCCAGGCGGTTTTAAAGCCGTTGATGTAACCGGTGTGAGC
AATCTTCTTAAAGCAGCATGTGAGACAGGTTCAGTTTCAAGGTTTGTCCT
CATTAGCACTATCGAGTCATCAGGCGCCCGGGAATCCGCCAAAAGAGAAG
CCGAAAGGCTTTTGATTGACAGTGGTTTGTCGTACGTAATCCTTCGAGTG
AAAAAACTTGAGGACTCGCCGGGTGGAGTGCGAGATATTGTCCTCACTGC
TGAGTCAGAGCCGGAGGTTAGTGCTACAAAGATTAATGGCATTAGCAGAG
TGGACTTGGCGCAAGTTGTATGCCAAGCTCTTGCTTATGAACGTTCCATT
GCCCAATTGAGCGATGCAGATCCTACTTCTGAGTTTGACTTTCCTAGCTG
TATCATTACAGCTTTCAATGGAAAGAATCCTCTTGTTCCGGACAAACGAT
TTTGGAAACGGGAATTCAACCGTATAAGCGACACATACAGGGAAAAGCCC
CTACCCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:592200..593258-

>Ggra1773.t1 ID=Ggra1773.t1|Name=Ggra1773.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000050_pilon:592200..593258- (Gracilaria gracilis GNS1m male)
ATGAGCCTTTGTTTTGGAGTTCCGTGCCCGGTCACTCAGCATCGAAAACG
CCTGTTGGATGAAGCACAGCAAATCCCGCCAAGCAAATGTCATATCAAAG
ACCGATCTCATCTCAGATGCTCAGCAGAGGAGCCCAAAAGCAATCCATCC
TCACGTATGAGGAAGCGCCCCACCCGTAAATCTTCCGCCTTCGAACGTAC
AATTGAAGATCTTACCATGAAACGAATGGGTAGAGGAACAATTTACTACG
GGCCGCGAGCCACTCCCGATCTTTCTGAACAACCTACAGAAGCCGACCAA
AATGACGTTTTAAAGCCTGACCCTATTCTAGTCACAGGTGCTACAGGAAG
AACAGGACAATGGATCGCGCTTGGATTGCTTAATCAGGATTTTAACGTCC
GCACGTTTGGCCGTAGTTACGACAGGGCAGAAAAACTCTTCGGTCCCTCG
GGTTCCAACGTTGATGTCTTTGAGGGCGATCTTGCAAATTACAAGGAAGT
GCTCGATGCAGTTGATGGTAGCAAAGCTATCGTATGCGCTAGTGGTGCTC
CAAGGTGGTTGCCAGGCGGTTTTAAAGCCGTTGATGTAACCGGTGTGAGC
AATCTTCTTAAAGCAGCATGTGAGACAGGTTCAGTTTCAAGGTTTGTCCT
CATTAGCACTATCGAGTCATCAGGCGCCCGGGAATCCGCCAAAAGAGAAG
CCGAAAGGCTTTTGATTGACAGTGGTTTGTCGTACGTAATCCTTCGAGTG
AAAAAACTTGAGGACTCGCCGGGTGGAGTGCGAGATATTGTCCTCACTGC
TGAGTCAGAGCCGGAGGTTAGTGCTACAAAGATTAATGGCATTAGCAGAG
TGGACTTGGCGCAAGTTGTATGCCAAGCTCTTGCTTATGAACGTTCCATT
GCCCAATTGAGCGATGCAGATCCTACTTCTGAGTTTGACTTTCCTAGCTG
TATCATTACAGCTTTCAATGGAAAGAATCCTCTTGTTCCGGACAAACGAT
TTTGGAAACGGGAATTCAACCGTATAAGCGACACATACAGGGAAAAGCCC
CTACCCTGA
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