Ggra1760.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1760.t1
Unique NameGgra1760.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:561530..562243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1760Ggra1760Gracilaria gracilis GNS1m malegenetig00000050_pilon 561530..562243 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1760.t1.start1Ggra1760.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 561530..561532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1760.t1.CDS1Ggra1760.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 561530..562243 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1760.t1.exon1Ggra1760.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 561530..562243 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1760.t1.stop1Ggra1760.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 562241..562243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1760.t1Ggra1760.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 561530..562243 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1760.t1 ID=Ggra1760.t1|Name=Ggra1760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=238bp
MDLTNVNTSIPDLLQRPPNQNISNLTLIRDSTDAADALPLLHHLVRALAL
SKQLPRSKILFLTTNSRAQIPTNSELCRFPFLTRASQVAFSHSTPCDPYT
VFEDVHEEQAKSDVTKNFLRFISASVNKTNPQVLVVECIHALEMVFSVDV
VPFIKSLTCVNGALSVILSAPVQCGIDDHIATLADMADTVIDLNNLQTGY
AHDVDGNISVVKQQGKWQLQAKPRRYKVTEPSFKIYS*
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spliced messenger RNA

>Ggra1760.t1 ID=Ggra1760.t1|Name=Ggra1760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000050_pilon:561530..562243+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTGACCAACGTTAACACAAGCATTCCTGATCTCCTTCAGCGGCC
ACCGAATCAGAACATTTCCAATCTCACCCTAATACGTGATTCAACCGACG
CAGCCGACGCCCTTCCTTTACTGCACCATCTTGTGCGCGCACTCGCCCTA
TCGAAGCAGCTTCCCCGCTCCAAAATTCTGTTCCTTACAACCAACTCAAG
AGCCCAGATTCCTACTAACTCAGAACTATGTCGCTTTCCGTTTCTAACAC
GGGCATCCCAAGTTGCCTTTTCGCACTCCACACCTTGTGATCCGTACACG
GTCTTCGAAGACGTGCATGAAGAGCAAGCCAAATCTGATGTGACCAAAAA
CTTTTTACGGTTTATCTCCGCCTCTGTGAACAAAACAAATCCTCAGGTGC
TTGTCGTTGAGTGCATTCATGCCTTAGAGATGGTTTTTTCGGTCGATGTC
GTTCCATTTATAAAGAGTCTCACATGTGTGAATGGAGCGCTCTCCGTGAT
CCTATCCGCCCCGGTTCAGTGTGGGATAGATGACCACATCGCTACTCTCG
CTGACATGGCAGACACCGTAATAGATTTGAACAATCTGCAGACAGGTTAT
GCTCATGATGTCGATGGCAACATCTCAGTCGTTAAGCAGCAAGGCAAATG
GCAGCTCCAAGCCAAACCTCGTCGATATAAGGTGACAGAACCCTCCTTCA
AAATCTATTCATAA
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protein sequence of Ggra1760.t1

>Ggra1760.t1 ID=Ggra1760.t1|Name=Ggra1760.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=238bp
MDLTNVNTSIPDLLQRPPNQNISNLTLIRDSTDAADALPLLHHLVRALAL
SKQLPRSKILFLTTNSRAQIPTNSELCRFPFLTRASQVAFSHSTPCDPYT
VFEDVHEEQAKSDVTKNFLRFISASVNKTNPQVLVVECIHALEMVFSVDV
VPFIKSLTCVNGALSVILSAPVQCGIDDHIATLADMADTVIDLNNLQTGY
AHDVDGNISVVKQQGKWQLQAKPRRYKVTEPSFKIYS*
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mRNA from alignment at tig00000050_pilon:561530..562243+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1760.t1 ID=Ggra1760.t1|Name=Ggra1760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000050_pilon:561530..562243+ (Gracilaria gracilis GNS1m male)
ATGGACTTGACCAACGTTAACACAAGCATTCCTGATCTCCTTCAGCGGCC
ACCGAATCAGAACATTTCCAATCTCACCCTAATACGTGATTCAACCGACG
CAGCCGACGCCCTTCCTTTACTGCACCATCTTGTGCGCGCACTCGCCCTA
TCGAAGCAGCTTCCCCGCTCCAAAATTCTGTTCCTTACAACCAACTCAAG
AGCCCAGATTCCTACTAACTCAGAACTATGTCGCTTTCCGTTTCTAACAC
GGGCATCCCAAGTTGCCTTTTCGCACTCCACACCTTGTGATCCGTACACG
GTCTTCGAAGACGTGCATGAAGAGCAAGCCAAATCTGATGTGACCAAAAA
CTTTTTACGGTTTATCTCCGCCTCTGTGAACAAAACAAATCCTCAGGTGC
TTGTCGTTGAGTGCATTCATGCCTTAGAGATGGTTTTTTCGGTCGATGTC
GTTCCATTTATAAAGAGTCTCACATGTGTGAATGGAGCGCTCTCCGTGAT
CCTATCCGCCCCGGTTCAGTGTGGGATAGATGACCACATCGCTACTCTCG
CTGACATGGCAGACACCGTAATAGATTTGAACAATCTGCAGACAGGTTAT
GCTCATGATGTCGATGGCAACATCTCAGTCGTTAAGCAGCAAGGCAAATG
GCAGCTCCAAGCCAAACCTCGTCGATATAAGGTGACAGAACCCTCCTTCA
AAATCTATTCATAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:561530..562243+

>Ggra1760.t1 ID=Ggra1760.t1|Name=Ggra1760.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000050_pilon:561530..562243+ (Gracilaria gracilis GNS1m male)
ATGGACTTGACCAACGTTAACACAAGCATTCCTGATCTCCTTCAGCGGCC
ACCGAATCAGAACATTTCCAATCTCACCCTAATACGTGATTCAACCGACG
CAGCCGACGCCCTTCCTTTACTGCACCATCTTGTGCGCGCACTCGCCCTA
TCGAAGCAGCTTCCCCGCTCCAAAATTCTGTTCCTTACAACCAACTCAAG
AGCCCAGATTCCTACTAACTCAGAACTATGTCGCTTTCCGTTTCTAACAC
GGGCATCCCAAGTTGCCTTTTCGCACTCCACACCTTGTGATCCGTACACG
GTCTTCGAAGACGTGCATGAAGAGCAAGCCAAATCTGATGTGACCAAAAA
CTTTTTACGGTTTATCTCCGCCTCTGTGAACAAAACAAATCCTCAGGTGC
TTGTCGTTGAGTGCATTCATGCCTTAGAGATGGTTTTTTCGGTCGATGTC
GTTCCATTTATAAAGAGTCTCACATGTGTGAATGGAGCGCTCTCCGTGAT
CCTATCCGCCCCGGTTCAGTGTGGGATAGATGACCACATCGCTACTCTCG
CTGACATGGCAGACACCGTAATAGATTTGAACAATCTGCAGACAGGTTAT
GCTCATGATGTCGATGGCAACATCTCAGTCGTTAAGCAGCAAGGCAAATG
GCAGCTCCAAGCCAAACCTCGTCGATATAAGGTGACAGAACCCTCCTTCA
AAATCTATTCATAA
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