Ggra1797.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1797.t1
Unique NameGgra1797.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:653628..654174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1797Ggra1797Gracilaria gracilis GNS1m malegenetig00000050_pilon 653628..654174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1797.t1Ggra1797.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 653628..654174 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1797.t1.start1Ggra1797.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 653628..653630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1797.t1.CDS1Ggra1797.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 653628..653991 +
Ggra1797.t1.CDS2Ggra1797.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 654062..654174 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1797.t1.exon1Ggra1797.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 653628..653991 +
Ggra1797.t1.exon2Ggra1797.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 654062..654174 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1797.t1.intron1Ggra1797.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 653992..654061 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1797.t1.stop1Ggra1797.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 654172..654174 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1797.t1 ID=Ggra1797.t1|Name=Ggra1797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MTAFVPTAPICIIESPKTPPPSSRRVFLRRAIAVTLLSALPHPLPTPAVP
TKQWPPEELCTHCSGRGKQACSICEGSGTLTIDDSVVVQDNVCPNCQGAG
SVRCPGCIGLGLANTNGILRNAARDGSLRMLRNGSYEILDCSAFPACDIY
GAGRRSQL*
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spliced messenger RNA

>Ggra1797.t1 ID=Ggra1797.t1|Name=Ggra1797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000050_pilon:653628..654174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTTTCGTACCCACAGCGCCAATATGCATCATTGAATCTCCCAA
AACCCCCCCACCATCCTCCCGCCGCGTCTTTCTTCGTCGTGCCATCGCCG
TCACATTGCTTTCCGCTCTACCACACCCATTGCCCACCCCCGCAGTCCCA
ACAAAACAATGGCCTCCTGAAGAACTGTGCACGCACTGCAGCGGTCGTGG
AAAACAGGCATGTTCGATTTGCGAGGGGTCCGGCACTTTAACAATCGATG
ACTCCGTCGTCGTGCAAGACAACGTGTGTCCAAACTGCCAGGGCGCCGGT
TCTGTGCGATGTCCAGGTTGCATTGGACTGGGACTTGCTAATACCAACGG
TATTCTGCGGAACGCTGCACGAGATGGTTCTTTGCGTATGCTACGAAATG
GAAGTTATGAGATTCTAGACTGTTCCGCCTTTCCCGCTTGCGACATATAC
GGCGCAGGACGTCGCAGTCAGCTGTAG
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protein sequence of Ggra1797.t1

>Ggra1797.t1 ID=Ggra1797.t1|Name=Ggra1797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MTAFVPTAPICIIESPKTPPPSSRRVFLRRAIAVTLLSALPHPLPTPAVP
TKQWPPEELCTHCSGRGKQACSICEGSGTLTIDDSVVVQDNVCPNCQGAG
SVRCPGCIGLGLANTNGILRNAARDGSLRMLRNGSYEILDCSAFPACDIY
GAGRRSQL*
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mRNA from alignment at tig00000050_pilon:653628..654174+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1797.t1 ID=Ggra1797.t1|Name=Ggra1797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp|location=Sequence derived from alignment at tig00000050_pilon:653628..654174+ (Gracilaria gracilis GNS1m male)
ATGACTGCTTTCGTACCCACAGCGCCAATATGCATCATTGAATCTCCCAA
AACCCCCCCACCATCCTCCCGCCGCGTCTTTCTTCGTCGTGCCATCGCCG
TCACATTGCTTTCCGCTCTACCACACCCATTGCCCACCCCCGCAGTCCCA
ACAAAACAATGGCCTCCTGAAGAACTGTGCACGCACTGCAGCGGTCGTGG
AAAACAGGCATGTTCGATTTGCGAGGGGTCCGGCACTTTAACAATCGATG
ACTCCGTCGTCGTGCAAGACAACGTGTGTCCAAACTGCCAGGGCGCCGGT
TCTGTGCGATGTCCAGGTTGCATTGGACTGGGACTTGCTAATACCAACGG
TATTCTGCGGAACGGTGCGTTTTTCTTAGCTCTCTGACTTTCATATTCCG
TTTCTCATGACTAACTGAATGCTCTATGTTACAGCTGCACGAGATGGTTC
TTTGCGTATGCTACGAAATGGAAGTTATGAGATTCTAGACTGTTCCGCCT
TTCCCGCTTGCGACATATACGGCGCAGGACGTCGCAGTCAGCTGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:653628..654174+

>Ggra1797.t1 ID=Ggra1797.t1|Name=Ggra1797.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000050_pilon:653628..654174+ (Gracilaria gracilis GNS1m male)
ATGACTGCTTTCGTACCCACAGCGCCAATATGCATCATTGAATCTCCCAA
AACCCCCCCACCATCCTCCCGCCGCGTCTTTCTTCGTCGTGCCATCGCCG
TCACATTGCTTTCCGCTCTACCACACCCATTGCCCACCCCCGCAGTCCCA
ACAAAACAATGGCCTCCTGAAGAACTGTGCACGCACTGCAGCGGTCGTGG
AAAACAGGCATGTTCGATTTGCGAGGGGTCCGGCACTTTAACAATCGATG
ACTCCGTCGTCGTGCAAGACAACGTGTGTCCAAACTGCCAGGGCGCCGGT
TCTGTGCGATGTCCAGGTTGCATTGGACTGGGACTTGCTAATACCAACGG
TATTCTGCGGAACGCTGCACGAGATGGTTCTTTGCGTATGCTACGAAATG
GAAGTTATGAGATTCTAGACTGTTCCGCCTTTCCCGCTTGCGACATATAC
GGCGCAGGACGTCGCAGTCAGCTGTAG
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