Ggra1761.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1761.t1
Unique Name	Ggra1761.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	700

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:562254..564353 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4530.OS11T0298400-01
PFAMs	AARP2CN,RIBIOP_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14799
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue	4.5e-108
EggNOG OGs	COG5177@1\|root,KOG1980@2759\|Eukaryota,37PP3@33090\|Viridiplantae,3GC9I@35493\|Streptophyta,3KTKQ@4447\|Liliopsida,3IFPC@38820\|Poales
Description	AARP2CN (NUC121) domain
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1761	Ggra1761	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 562254..564353 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1761.t1.stop1	Ggra1761.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 562254..562256 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1761.t1.CDS1	Ggra1761.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 562254..564353 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1761.t1.exon1	Ggra1761.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 562254..564353 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1761.t1.start1	Ggra1761.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 564351..564353 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1761.t1	Ggra1761.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 562254..564353 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:562254..564353-
coding sequence from alignment at tig00000050_pilon:562254..564353-

mRNA sequence

>Ggra1761.t1 ID=Ggra1761.t1|Name=Ggra1761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=700bp
MGSRRTRRAHGRVQPTQALKKKYAAPTGVSKLQRKKARRIQLRTEIITAA
KAARRAKQSQPPLLVGILSVCGARDDHMRALCSTIHSTEMEKSAQPLDSY
VLSREGKTQRQVLIAALDLAKVADIMLLVFSGRDDMDMESIELLRAMRSQ
GMPSMHIIALGDGADDPVLRKLRGRQLAAESLGEDHTLRPIQFSLSMSGE
DVARNKSALRRILAKSPRVVSWRSRYGYMRVESALTDETTAVPSASLTLC
GWIRGRGLSANELLHITGFGSFAVNKIMDCRNGTVLSERNEMEAEPVESV
GEVDEMMGEQTWPPEMVGEEVEDEDETEGLAKHYDQTLEAEERAENELEQ
EEFMIEATPDDKLSEMDDEKLSVDEEELKRLREAAKTDTEFPDEVDVPID
QPARVRFARYRGLKSLRTGEWDPKEQLPQEYASLFQFRNLAATRKKVLGR
AREDGQMASAGSERSNFAQSGTKVYVELKSVPKEIQERIAFMLKSNQAPL
VASGMLRHENRRSVVHFGVQRVDDEENAPITKAKTRLEMHCGFVRFEGRP
MFSENNPNSDKHKMERYLQHGRYTVVSYYGPAIYAPAPALLCHRNGAIIA
AGSALGADVDRIILKRIVITGYPFKTQKRRSVARFMFFNADDVRWFKPVE
LWTKLGRSGHILEPVGTHGHMKCVFDNVVLHHDTICMTLYKRVYPKLIE*

spliced messenger RNA

>Ggra1761.t1 ID=Ggra1761.t1|Name=Ggra1761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00000050_pilon:562254..564353- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCTCGTCGCACACGCCGTGCTCACGGAAGAGTACAACCCACTCA
AGCGCTCAAGAAGAAGTATGCAGCCCCCACTGGTGTATCCAAGCTACAAC
GCAAGAAGGCACGTAGAATTCAACTTCGAACAGAGATTATTACTGCCGCC
AAAGCCGCAAGACGAGCAAAACAGTCTCAGCCGCCGCTTCTAGTTGGTAT
TTTATCGGTCTGCGGTGCTCGAGACGATCACATGCGTGCGCTTTGTTCTA
CCATTCATTCCACGGAGATGGAGAAATCTGCACAGCCATTAGATTCCTAC
GTTCTTTCAAGAGAGGGGAAAACGCAAAGGCAGGTGCTCATTGCCGCTCT
GGACCTGGCTAAAGTGGCTGATATCATGCTACTAGTCTTTTCAGGGCGGG
ACGATATGGATATGGAAAGTATTGAATTGCTTAGAGCTATGAGATCCCAG
GGTATGCCTTCCATGCATATTATTGCTCTTGGTGATGGTGCAGATGACCC
TGTGCTACGCAAACTGCGAGGACGTCAGCTAGCCGCCGAGAGTTTGGGCG
AAGATCACACCCTAAGACCGATTCAATTCTCGCTTTCCATGTCAGGTGAA
GATGTGGCAAGAAACAAGAGCGCCCTGCGTCGGATACTCGCCAAGTCTCC
ACGAGTTGTAAGTTGGCGCTCGCGATACGGATACATGAGAGTCGAATCAG
CTCTGACGGATGAAACAACTGCTGTCCCTAGTGCTAGCCTAACGCTGTGT
GGCTGGATACGCGGACGCGGTTTATCAGCGAATGAATTGCTTCATATTAC
TGGGTTCGGCTCTTTCGCCGTTAATAAAATCATGGACTGCAGAAATGGTA
CAGTCCTTAGCGAGCGTAATGAAATGGAAGCCGAGCCAGTCGAGAGCGTG
GGCGAGGTTGATGAAATGATGGGAGAGCAAACTTGGCCTCCCGAAATGGT
CGGTGAGGAAGTAGAGGATGAGGACGAAACCGAGGGGCTGGCCAAACACT
ATGATCAAACTTTGGAGGCTGAAGAGCGCGCAGAGAATGAACTTGAACAA
GAGGAGTTCATGATCGAAGCAACCCCGGATGACAAACTCAGCGAAATGGA
TGATGAGAAGTTATCTGTTGATGAAGAAGAGCTTAAACGACTTCGTGAGG
CAGCAAAAACAGATACCGAGTTCCCAGATGAAGTTGATGTACCTATAGAC
CAGCCAGCACGCGTGCGTTTTGCGAGATACCGGGGTCTCAAATCACTTCG
CACTGGCGAATGGGACCCGAAGGAACAGCTTCCACAAGAATATGCAAGCC
TGTTTCAGTTCCGCAATCTTGCCGCCACGAGAAAGAAAGTACTGGGACGC
GCAAGGGAAGATGGTCAGATGGCATCGGCGGGGAGTGAGCGATCAAACTT
TGCACAGAGTGGAACGAAAGTATATGTCGAATTGAAGTCAGTACCGAAAG
AGATCCAAGAGCGTATCGCTTTTATGCTGAAATCTAATCAGGCACCACTT
GTGGCCTCCGGAATGCTGCGACATGAGAATCGAAGAAGTGTTGTCCACTT
TGGTGTCCAGCGCGTTGATGACGAGGAAAACGCACCAATCACCAAAGCGA
AAACTCGCCTAGAAATGCACTGCGGGTTTGTGAGATTCGAAGGACGGCCA
ATGTTTTCAGAGAACAATCCCAACTCTGATAAACATAAGATGGAACGGTA
CTTACAACATGGAAGATACACGGTGGTTTCATATTACGGACCCGCGATCT
ATGCGCCAGCTCCTGCCCTGTTGTGTCATCGTAATGGTGCGATAATTGCC
GCCGGAAGCGCGCTTGGAGCTGATGTAGATAGGATCATTTTGAAGAGAAT
CGTCATCACTGGATACCCCTTCAAGACACAGAAGCGACGATCTGTTGCAC
GGTTTATGTTCTTCAACGCTGATGATGTGCGATGGTTTAAGCCTGTAGAA
CTTTGGACAAAACTGGGAAGATCCGGTCATATTTTGGAGCCAGTGGGAAC
TCATGGACATATGAAGTGCGTGTTTGATAACGTGGTGTTGCATCATGATA
CGATATGCATGACATTGTACAAACGAGTGTATCCAAAACTTATAGAATGA

protein sequence of Ggra1761.t1

>Ggra1761.t1 ID=Ggra1761.t1|Name=Ggra1761.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=700bp
MGSRRTRRAHGRVQPTQALKKKYAAPTGVSKLQRKKARRIQLRTEIITAA
KAARRAKQSQPPLLVGILSVCGARDDHMRALCSTIHSTEMEKSAQPLDSY
VLSREGKTQRQVLIAALDLAKVADIMLLVFSGRDDMDMESIELLRAMRSQ
GMPSMHIIALGDGADDPVLRKLRGRQLAAESLGEDHTLRPIQFSLSMSGE
DVARNKSALRRILAKSPRVVSWRSRYGYMRVESALTDETTAVPSASLTLC
GWIRGRGLSANELLHITGFGSFAVNKIMDCRNGTVLSERNEMEAEPVESV
GEVDEMMGEQTWPPEMVGEEVEDEDETEGLAKHYDQTLEAEERAENELEQ
EEFMIEATPDDKLSEMDDEKLSVDEEELKRLREAAKTDTEFPDEVDVPID
QPARVRFARYRGLKSLRTGEWDPKEQLPQEYASLFQFRNLAATRKKVLGR
AREDGQMASAGSERSNFAQSGTKVYVELKSVPKEIQERIAFMLKSNQAPL
VASGMLRHENRRSVVHFGVQRVDDEENAPITKAKTRLEMHCGFVRFEGRP
MFSENNPNSDKHKMERYLQHGRYTVVSYYGPAIYAPAPALLCHRNGAIIA
AGSALGADVDRIILKRIVITGYPFKTQKRRSVARFMFFNADDVRWFKPVE
LWTKLGRSGHILEPVGTHGHMKCVFDNVVLHHDTICMTLYKRVYPKLIE*

mRNA from alignment at tig00000050_pilon:562254..564353-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1761.t1 ID=Ggra1761.t1|Name=Ggra1761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00000050_pilon:562254..564353- (Gracilaria gracilis GNS1m male)
ATGGGGTCTCGTCGCACACGCCGTGCTCACGGAAGAGTACAACCCACTCA
AGCGCTCAAGAAGAAGTATGCAGCCCCCACTGGTGTATCCAAGCTACAAC
GCAAGAAGGCACGTAGAATTCAACTTCGAACAGAGATTATTACTGCCGCC
AAAGCCGCAAGACGAGCAAAACAGTCTCAGCCGCCGCTTCTAGTTGGTAT
TTTATCGGTCTGCGGTGCTCGAGACGATCACATGCGTGCGCTTTGTTCTA
CCATTCATTCCACGGAGATGGAGAAATCTGCACAGCCATTAGATTCCTAC
GTTCTTTCAAGAGAGGGGAAAACGCAAAGGCAGGTGCTCATTGCCGCTCT
GGACCTGGCTAAAGTGGCTGATATCATGCTACTAGTCTTTTCAGGGCGGG
ACGATATGGATATGGAAAGTATTGAATTGCTTAGAGCTATGAGATCCCAG
GGTATGCCTTCCATGCATATTATTGCTCTTGGTGATGGTGCAGATGACCC
TGTGCTACGCAAACTGCGAGGACGTCAGCTAGCCGCCGAGAGTTTGGGCG
AAGATCACACCCTAAGACCGATTCAATTCTCGCTTTCCATGTCAGGTGAA
GATGTGGCAAGAAACAAGAGCGCCCTGCGTCGGATACTCGCCAAGTCTCC
ACGAGTTGTAAGTTGGCGCTCGCGATACGGATACATGAGAGTCGAATCAG
CTCTGACGGATGAAACAACTGCTGTCCCTAGTGCTAGCCTAACGCTGTGT
GGCTGGATACGCGGACGCGGTTTATCAGCGAATGAATTGCTTCATATTAC
TGGGTTCGGCTCTTTCGCCGTTAATAAAATCATGGACTGCAGAAATGGTA
CAGTCCTTAGCGAGCGTAATGAAATGGAAGCCGAGCCAGTCGAGAGCGTG
GGCGAGGTTGATGAAATGATGGGAGAGCAAACTTGGCCTCCCGAAATGGT
CGGTGAGGAAGTAGAGGATGAGGACGAAACCGAGGGGCTGGCCAAACACT
ATGATCAAACTTTGGAGGCTGAAGAGCGCGCAGAGAATGAACTTGAACAA
GAGGAGTTCATGATCGAAGCAACCCCGGATGACAAACTCAGCGAAATGGA
TGATGAGAAGTTATCTGTTGATGAAGAAGAGCTTAAACGACTTCGTGAGG
CAGCAAAAACAGATACCGAGTTCCCAGATGAAGTTGATGTACCTATAGAC
CAGCCAGCACGCGTGCGTTTTGCGAGATACCGGGGTCTCAAATCACTTCG
CACTGGCGAATGGGACCCGAAGGAACAGCTTCCACAAGAATATGCAAGCC
TGTTTCAGTTCCGCAATCTTGCCGCCACGAGAAAGAAAGTACTGGGACGC
GCAAGGGAAGATGGTCAGATGGCATCGGCGGGGAGTGAGCGATCAAACTT
TGCACAGAGTGGAACGAAAGTATATGTCGAATTGAAGTCAGTACCGAAAG
AGATCCAAGAGCGTATCGCTTTTATGCTGAAATCTAATCAGGCACCACTT
GTGGCCTCCGGAATGCTGCGACATGAGAATCGAAGAAGTGTTGTCCACTT
TGGTGTCCAGCGCGTTGATGACGAGGAAAACGCACCAATCACCAAAGCGA
AAACTCGCCTAGAAATGCACTGCGGGTTTGTGAGATTCGAAGGACGGCCA
ATGTTTTCAGAGAACAATCCCAACTCTGATAAACATAAGATGGAACGGTA
CTTACAACATGGAAGATACACGGTGGTTTCATATTACGGACCCGCGATCT
ATGCGCCAGCTCCTGCCCTGTTGTGTCATCGTAATGGTGCGATAATTGCC
GCCGGAAGCGCGCTTGGAGCTGATGTAGATAGGATCATTTTGAAGAGAAT
CGTCATCACTGGATACCCCTTCAAGACACAGAAGCGACGATCTGTTGCAC
GGTTTATGTTCTTCAACGCTGATGATGTGCGATGGTTTAAGCCTGTAGAA
CTTTGGACAAAACTGGGAAGATCCGGTCATATTTTGGAGCCAGTGGGAAC
TCATGGACATATGAAGTGCGTGTTTGATAACGTGGTGTTGCATCATGATA
CGATATGCATGACATTGTACAAACGAGTGTATCCAAAACTTATAGAATGA

Coding sequence (CDS) from alignment at tig00000050_pilon:562254..564353-

>Ggra1761.t1 ID=Ggra1761.t1|Name=Ggra1761.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2100bp|location=Sequence derived from alignment at tig00000050_pilon:562254..564353- (Gracilaria gracilis GNS1m male)
ATGGGGTCTCGTCGCACACGCCGTGCTCACGGAAGAGTACAACCCACTCA
AGCGCTCAAGAAGAAGTATGCAGCCCCCACTGGTGTATCCAAGCTACAAC
GCAAGAAGGCACGTAGAATTCAACTTCGAACAGAGATTATTACTGCCGCC
AAAGCCGCAAGACGAGCAAAACAGTCTCAGCCGCCGCTTCTAGTTGGTAT
TTTATCGGTCTGCGGTGCTCGAGACGATCACATGCGTGCGCTTTGTTCTA
CCATTCATTCCACGGAGATGGAGAAATCTGCACAGCCATTAGATTCCTAC
GTTCTTTCAAGAGAGGGGAAAACGCAAAGGCAGGTGCTCATTGCCGCTCT
GGACCTGGCTAAAGTGGCTGATATCATGCTACTAGTCTTTTCAGGGCGGG
ACGATATGGATATGGAAAGTATTGAATTGCTTAGAGCTATGAGATCCCAG
GGTATGCCTTCCATGCATATTATTGCTCTTGGTGATGGTGCAGATGACCC
TGTGCTACGCAAACTGCGAGGACGTCAGCTAGCCGCCGAGAGTTTGGGCG
AAGATCACACCCTAAGACCGATTCAATTCTCGCTTTCCATGTCAGGTGAA
GATGTGGCAAGAAACAAGAGCGCCCTGCGTCGGATACTCGCCAAGTCTCC
ACGAGTTGTAAGTTGGCGCTCGCGATACGGATACATGAGAGTCGAATCAG
CTCTGACGGATGAAACAACTGCTGTCCCTAGTGCTAGCCTAACGCTGTGT
GGCTGGATACGCGGACGCGGTTTATCAGCGAATGAATTGCTTCATATTAC
TGGGTTCGGCTCTTTCGCCGTTAATAAAATCATGGACTGCAGAAATGGTA
CAGTCCTTAGCGAGCGTAATGAAATGGAAGCCGAGCCAGTCGAGAGCGTG
GGCGAGGTTGATGAAATGATGGGAGAGCAAACTTGGCCTCCCGAAATGGT
CGGTGAGGAAGTAGAGGATGAGGACGAAACCGAGGGGCTGGCCAAACACT
ATGATCAAACTTTGGAGGCTGAAGAGCGCGCAGAGAATGAACTTGAACAA
GAGGAGTTCATGATCGAAGCAACCCCGGATGACAAACTCAGCGAAATGGA
TGATGAGAAGTTATCTGTTGATGAAGAAGAGCTTAAACGACTTCGTGAGG
CAGCAAAAACAGATACCGAGTTCCCAGATGAAGTTGATGTACCTATAGAC
CAGCCAGCACGCGTGCGTTTTGCGAGATACCGGGGTCTCAAATCACTTCG
CACTGGCGAATGGGACCCGAAGGAACAGCTTCCACAAGAATATGCAAGCC
TGTTTCAGTTCCGCAATCTTGCCGCCACGAGAAAGAAAGTACTGGGACGC
GCAAGGGAAGATGGTCAGATGGCATCGGCGGGGAGTGAGCGATCAAACTT
TGCACAGAGTGGAACGAAAGTATATGTCGAATTGAAGTCAGTACCGAAAG
AGATCCAAGAGCGTATCGCTTTTATGCTGAAATCTAATCAGGCACCACTT
GTGGCCTCCGGAATGCTGCGACATGAGAATCGAAGAAGTGTTGTCCACTT
TGGTGTCCAGCGCGTTGATGACGAGGAAAACGCACCAATCACCAAAGCGA
AAACTCGCCTAGAAATGCACTGCGGGTTTGTGAGATTCGAAGGACGGCCA
ATGTTTTCAGAGAACAATCCCAACTCTGATAAACATAAGATGGAACGGTA
CTTACAACATGGAAGATACACGGTGGTTTCATATTACGGACCCGCGATCT
ATGCGCCAGCTCCTGCCCTGTTGTGTCATCGTAATGGTGCGATAATTGCC
GCCGGAAGCGCGCTTGGAGCTGATGTAGATAGGATCATTTTGAAGAGAAT
CGTCATCACTGGATACCCCTTCAAGACACAGAAGCGACGATCTGTTGCAC
GGTTTATGTTCTTCAACGCTGATGATGTGCGATGGTTTAAGCCTGTAGAA
CTTTGGACAAAACTGGGAAGATCCGGTCATATTTTGGAGCCAGTGGGAAC
TCATGGACATATGAAGTGCGTGTTTGATAACGTGGTGTTGCATCATGATA
CGATATGCATGACATTGTACAAACGAGTGTATCCAAAACTTATAGAATGA