Ggra1745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1745.t1
Unique Name	Ggra1745.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:529723..530526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704587.1
PFAMs	Ribosomal_L27A
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02876
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Evalue	2.96e-44
EggNOG OGs	COG0200@1\|root,KOG0846@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1745	Ggra1745	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 529723..530526 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1745.t1.start1	Ggra1745.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 529723..529725 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1745.t1.CDS1	Ggra1745.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 529723..530526 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1745.t1.exon1	Ggra1745.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 529723..530526 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1745.t1.stop1	Ggra1745.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 530524..530526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1745.t1	Ggra1745.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 529723..530526 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:529723..530526+
coding sequence from alignment at tig00000050_pilon:529723..530526+

mRNA sequence

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MQLLRSSMTSGSSLIYVRGLRTAASRPVVKDLTKHMQGMALKLSNICDNP
GARKKEVRVGRGRGSGCGKTSGRGQKGQRARNSVALGFEGGQTPLQKRFP
KVRTYDPFAKDIQTVTLGRIQRFVDTGRLDPNAEIGLNQLVQSGCVRRIK
DGLRLIKGGPGTCSKLHIRVSECTPDAAEQVISKGGQICLAYYNKLGIRI
VVKPFKWTDQGLPLPRFAQPPPKSAHRYLDEDKDGVPIRILKEHQDIEQM
IKDWPRLIHRREAKAKH*

spliced messenger RNA

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:529723..530526+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGCTTCGATCCTCAATGACCTCAGGGTCGTCACTGATCTACGT
TCGAGGACTCAGAACAGCCGCAAGCCGACCCGTAGTGAAGGATCTCACGA
AACATATGCAAGGAATGGCTCTCAAATTATCGAACATCTGCGACAACCCT
GGGGCTCGAAAGAAAGAAGTTCGCGTTGGCAGAGGTCGTGGATCCGGGTG
TGGTAAGACCTCAGGGCGTGGACAGAAAGGCCAAAGAGCTAGGAACTCCG
TAGCTCTTGGTTTTGAAGGAGGGCAAACCCCATTGCAGAAACGCTTCCCA
AAGGTGAGGACTTATGATCCTTTCGCGAAAGACATTCAAACAGTCACATT
GGGTAGAATTCAGCGATTTGTTGATACAGGTCGCTTAGATCCGAATGCTG
AAATCGGACTTAATCAGTTGGTTCAAAGTGGATGCGTAAGACGAATAAAG
GACGGCTTACGCCTCATTAAAGGTGGACCAGGAACTTGTTCAAAGTTACA
TATTCGGGTCAGTGAATGCACTCCGGATGCGGCAGAGCAGGTGATTAGCA
AAGGAGGGCAAATCTGTTTGGCATACTACAACAAGCTTGGAATCCGCATT
GTTGTGAAGCCATTTAAATGGACTGATCAGGGACTGCCTCTGCCTCGCTT
CGCACAACCTCCTCCTAAAAGCGCACACCGGTACCTGGATGAAGACAAAG
ATGGTGTTCCTATCAGGATTTTGAAAGAACACCAAGACATTGAACAAATG
ATAAAAGATTGGCCACGACTGATACACAGGAGAGAAGCGAAGGCGAAGCA
TTGA

protein sequence of Ggra1745.t1

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MQLLRSSMTSGSSLIYVRGLRTAASRPVVKDLTKHMQGMALKLSNICDNP
GARKKEVRVGRGRGSGCGKTSGRGQKGQRARNSVALGFEGGQTPLQKRFP
KVRTYDPFAKDIQTVTLGRIQRFVDTGRLDPNAEIGLNQLVQSGCVRRIK
DGLRLIKGGPGTCSKLHIRVSECTPDAAEQVISKGGQICLAYYNKLGIRI
VVKPFKWTDQGLPLPRFAQPPPKSAHRYLDEDKDGVPIRILKEHQDIEQM
IKDWPRLIHRREAKAKH*

mRNA from alignment at tig00000050_pilon:529723..530526+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:529723..530526+ (Gracilaria gracilis GNS1m male)
ATGCAGCTGCTTCGATCCTCAATGACCTCAGGGTCGTCACTGATCTACGT
TCGAGGACTCAGAACAGCCGCAAGCCGACCCGTAGTGAAGGATCTCACGA
AACATATGCAAGGAATGGCTCTCAAATTATCGAACATCTGCGACAACCCT
GGGGCTCGAAAGAAAGAAGTTCGCGTTGGCAGAGGTCGTGGATCCGGGTG
TGGTAAGACCTCAGGGCGTGGACAGAAAGGCCAAAGAGCTAGGAACTCCG
TAGCTCTTGGTTTTGAAGGAGGGCAAACCCCATTGCAGAAACGCTTCCCA
AAGGTGAGGACTTATGATCCTTTCGCGAAAGACATTCAAACAGTCACATT
GGGTAGAATTCAGCGATTTGTTGATACAGGTCGCTTAGATCCGAATGCTG
AAATCGGACTTAATCAGTTGGTTCAAAGTGGATGCGTAAGACGAATAAAG
GACGGCTTACGCCTCATTAAAGGTGGACCAGGAACTTGTTCAAAGTTACA
TATTCGGGTCAGTGAATGCACTCCGGATGCGGCAGAGCAGGTGATTAGCA
AAGGAGGGCAAATCTGTTTGGCATACTACAACAAGCTTGGAATCCGCATT
GTTGTGAAGCCATTTAAATGGACTGATCAGGGACTGCCTCTGCCTCGCTT
CGCACAACCTCCTCCTAAAAGCGCACACCGGTACCTGGATGAAGACAAAG
ATGGTGTTCCTATCAGGATTTTGAAAGAACACCAAGACATTGAACAAATG
ATAAAAGATTGGCCACGACTGATACACAGGAGAGAAGCGAAGGCGAAGCA
TTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:529723..530526+

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:529723..530526+ (Gracilaria gracilis GNS1m male)
ATGCAGCTGCTTCGATCCTCAATGACCTCAGGGTCGTCACTGATCTACGT
TCGAGGACTCAGAACAGCCGCAAGCCGACCCGTAGTGAAGGATCTCACGA
AACATATGCAAGGAATGGCTCTCAAATTATCGAACATCTGCGACAACCCT
GGGGCTCGAAAGAAAGAAGTTCGCGTTGGCAGAGGTCGTGGATCCGGGTG
TGGTAAGACCTCAGGGCGTGGACAGAAAGGCCAAAGAGCTAGGAACTCCG
TAGCTCTTGGTTTTGAAGGAGGGCAAACCCCATTGCAGAAACGCTTCCCA
AAGGTGAGGACTTATGATCCTTTCGCGAAAGACATTCAAACAGTCACATT
GGGTAGAATTCAGCGATTTGTTGATACAGGTCGCTTAGATCCGAATGCTG
AAATCGGACTTAATCAGTTGGTTCAAAGTGGATGCGTAAGACGAATAAAG
GACGGCTTACGCCTCATTAAAGGTGGACCAGGAACTTGTTCAAAGTTACA
TATTCGGGTCAGTGAATGCACTCCGGATGCGGCAGAGCAGGTGATTAGCA
AAGGAGGGCAAATCTGTTTGGCATACTACAACAAGCTTGGAATCCGCATT
GTTGTGAAGCCATTTAAATGGACTGATCAGGGACTGCCTCTGCCTCGCTT
CGCACAACCTCCTCCTAAAAGCGCACACCGGTACCTGGATGAAGACAAAG
ATGGTGTTCCTATCAGGATTTTGAAAGAACACCAAGACATTGAACAAATG
ATAAAAGATTGGCCACGACTGATACACAGGAGAGAAGCGAAGGCGAAGCA
TTGA