Ggra1789.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1789.t1
Unique NameGgra1789.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:628316..629587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1223523.H340_22326
Max annot lvl201174|Actinobacteria
Evalue1.23e-41
EggNOG OGsCOG2357@1|root,COG2357@2|Bacteria,2I30R@201174|Actinobacteria
DescriptionRelA SpoT domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1789Ggra1789Gracilaria gracilis GNS1m malegenetig00000050_pilon 628316..629587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1789.t1Ggra1789.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 628316..629587 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1789.t1.start1Ggra1789.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 628316..628318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1789.t1.CDS1Ggra1789.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 628316..629090 +
Ggra1789.t1.CDS2Ggra1789.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 629182..629249 +
Ggra1789.t1.CDS3Ggra1789.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 629408..629587 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1789.t1.exon1Ggra1789.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 628316..629090 +
Ggra1789.t1.exon2Ggra1789.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 629182..629249 +
Ggra1789.t1.exon3Ggra1789.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 629408..629587 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1789.t1.intron1Ggra1789.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 629091..629181 +
Ggra1789.t1.intron2Ggra1789.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 629250..629407 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1789.t1.stop1Ggra1789.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 629585..629587 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1789.t1 ID=Ggra1789.t1|Name=Ggra1789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MAVRTLLLVPLCLALLLLRCGARTADPKIKGIAFSTGHDPWGYRQWYAHQ
SLSQLLATGANYVQLSVYTKMPSLRALTADQQTDDDSIRYIIRTVKRRGA
KVFLKPVVEIAGHTWRGFLDGRPIWFRKVYRPFITRMAEIAQEEGVDLLS
LGSEYRGAEKQVREWHLTINAVKQVYTGRLTYIANHDSYRRVHFWHRMDY
ISISAYFRLMDGVRGPSPDMNRTKAMWQHISDDILDWRVWRNFSHKQVLV
AEVGAQSKGDGIVYRVPWDWNIAAPVDFNEQVKMYEGICSAFMPHDWIAG
IVFWNWELQPHAGTYQPGIAGYTPQNKPALQVIRRYFAST*
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spliced messenger RNA

>Ggra1789.t1 ID=Ggra1789.t1|Name=Ggra1789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000050_pilon:628316..629587+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGCGAACgctgctgctcgtcccgctctgtctcgcgctgctgct
gctgcgctgcggcGCGCGTACCGCCGACCCCAAGATCAAGGGCATTGCCT
TCTCCACCGGCCACGACCCGTGGGGCTATCGCCAGTGGTACGCGCATCAG
TCGCTGTCGCAACTGCTGGCCACCGGCGCCAACTACGTGCAGCTGTCCGT
GTACACCAAGATGCCGTCGCTGCGCGCGCTCACCGCCGATCAGCAGACCG
ACGACGACTCCATCCGCTACATCATCCGCACCGTCAAGCGCCGCGGCGCA
AAGGTGTTCCTCAAGCCCGTGGTGGAAATCGCCGGCCATACGTGGCGCGG
CTTTCTGGACGGTCGCCCCATCTGGTTCCGCAAGGTGTACCGCCCGTTCA
TCACGCGCATGGCCGAGATCGCGCAGGAAGAGGGCGTCGACCTGTTGTCG
TTGGGCAGCGAGTACCGCGGCGCCGAGAAGCAGGTGAGGGAGTGGCATCT
CACTATCAACGCCGTCAAGCAAGTGTACACCGGTCGCTTGACGTACATTG
CCAATCACGACTCGTACCGACGCGTGCATTTCTGGCATCGCATGGATTAT
ATCTCCATCTCGGCGTACTTCCGGCTGATGGACGGCGTGCGCGGCCCTTC
GCCGGATATGAACCGCACCAAGGCCATGTGGCAACACATCTCGGACGACA
TTCTCGATTGGCGTGTGTGGCGCAACTTTTCGCACAAGCAGGTGCTGGTG
GCCGAGGTGGGCGCGCAAAGCAAAGGTGATGGAATCGTGTATCGCGTGCC
ATGGGACTGGAATATCGCCGCGCCAGTTGACTTTAACGAACAGGTGAAAA
TGTACGAGGGCATCTGCTCAGCGTTCATGCCACACGACTGGATTGCCGGC
ATCGTGTTCTGGAACTGGGAGCTACAACCGCATGCCGGAACGTACCAACC
GGGAATTGCGGGCTACACGCCGCAGAACAAGCCCGCGTTACAAGTCATCC
GACGTTACTTTGCGTCCACATAG
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protein sequence of Ggra1789.t1

>Ggra1789.t1 ID=Ggra1789.t1|Name=Ggra1789.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MAVRTLLLVPLCLALLLLRCGARTADPKIKGIAFSTGHDPWGYRQWYAHQ
SLSQLLATGANYVQLSVYTKMPSLRALTADQQTDDDSIRYIIRTVKRRGA
KVFLKPVVEIAGHTWRGFLDGRPIWFRKVYRPFITRMAEIAQEEGVDLLS
LGSEYRGAEKQVREWHLTINAVKQVYTGRLTYIANHDSYRRVHFWHRMDY
ISISAYFRLMDGVRGPSPDMNRTKAMWQHISDDILDWRVWRNFSHKQVLV
AEVGAQSKGDGIVYRVPWDWNIAAPVDFNEQVKMYEGICSAFMPHDWIAG
IVFWNWELQPHAGTYQPGIAGYTPQNKPALQVIRRYFAST*
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mRNA from alignment at tig00000050_pilon:628316..629587+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1789.t1 ID=Ggra1789.t1|Name=Ggra1789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000050_pilon:628316..629587+ (Gracilaria gracilis GNS1m male)
ATGGCTGTGCGAACgctgctgctcgtcccgctctgtctcgcgctgctgct
gctgcgctgcggcGCGCGTACCGCCGACCCCAAGATCAAGGGCATTGCCT
TCTCCACCGGCCACGACCCGTGGGGCTATCGCCAGTGGTACGCGCATCAG
TCGCTGTCGCAACTGCTGGCCACCGGCGCCAACTACGTGCAGCTGTCCGT
GTACACCAAGATGCCGTCGCTGCGCGCGCTCACCGCCGATCAGCAGACCG
ACGACGACTCCATCCGCTACATCATCCGCACCGTCAAGCGCCGCGGCGCA
AAGGTGTTCCTCAAGCCCGTGGTGGAAATCGCCGGCCATACGTGGCGCGG
CTTTCTGGACGGTCGCCCCATCTGGTTCCGCAAGGTGTACCGCCCGTTCA
TCACGCGCATGGCCGAGATCGCGCAGGAAGAGGGCGTCGACCTGTTGTCG
TTGGGCAGCGAGTACCGCGGCGCCGAGAAGCAGGTGAGGGAGTGGCATCT
CACTATCAACGCCGTCAAGCAAGTGTACACCGGTCGCTTGACGTACATTG
CCAATCACGACTCGTACCGACGCGTGCATTTCTGGCATCGCATGGATTAT
ATCTCCATCTCGGCGTACTTCCGGCTGATGGACGGCGTGCGCGGCCCTTC
GCCGGATATGAACCGCACCAAGGCCATGTGGCAACACATCTCGGACGACA
TTCTCGATTGGCGTGTGTGGCGCAACTTTTCGCACAAGCAGGTGCTGGTG
GCCGAGGTGGGCGCGCAAAGCAAAGGTAAGTTTGAATCCGTCGTCCCAAC
TTGCAATCAATTTCATCTCGGCGAGTGTTGCTCACCGCCTCGTGTTTTGT
TTGATATTGGAATCAGGTGATGGAATCGTGTATCGCGTGCCATGGGACTG
GAATATCGCCGCGCCAGTTGACTTTAACGAACAGGTACGTATCCAAGTCA
CCTGACCTTTCTCTTTTTTTTCAACCGCTGCGCTGTTTAATGTGAGCCAC
ACAGAAGCTAACCTCGCCATccccccccccccccccccccccccccACcg
acgttgtcgtcgtcgtcgtcgtccgtcgtcgCGCGTTTACAGGTGAAAAT
GTACGAGGGCATCTGCTCAGCGTTCATGCCACACGACTGGATTGCCGGCA
TCGTGTTCTGGAACTGGGAGCTACAACCGCATGCCGGAACGTACCAACCG
GGAATTGCGGGCTACACGCCGCAGAACAAGCCCGCGTTACAAGTCATCCG
ACGTTACTTTGCGTCCACATAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:628316..629587+

>Ggra1789.t1 ID=Ggra1789.t1|Name=Ggra1789.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000050_pilon:628316..629587+ (Gracilaria gracilis GNS1m male)
ATGGCTGTGCGAACgctgctgctcgtcccgctctgtctcgcgctgctgct
gctgcgctgcggcGCGCGTACCGCCGACCCCAAGATCAAGGGCATTGCCT
TCTCCACCGGCCACGACCCGTGGGGCTATCGCCAGTGGTACGCGCATCAG
TCGCTGTCGCAACTGCTGGCCACCGGCGCCAACTACGTGCAGCTGTCCGT
GTACACCAAGATGCCGTCGCTGCGCGCGCTCACCGCCGATCAGCAGACCG
ACGACGACTCCATCCGCTACATCATCCGCACCGTCAAGCGCCGCGGCGCA
AAGGTGTTCCTCAAGCCCGTGGTGGAAATCGCCGGCCATACGTGGCGCGG
CTTTCTGGACGGTCGCCCCATCTGGTTCCGCAAGGTGTACCGCCCGTTCA
TCACGCGCATGGCCGAGATCGCGCAGGAAGAGGGCGTCGACCTGTTGTCG
TTGGGCAGCGAGTACCGCGGCGCCGAGAAGCAGGTGAGGGAGTGGCATCT
CACTATCAACGCCGTCAAGCAAGTGTACACCGGTCGCTTGACGTACATTG
CCAATCACGACTCGTACCGACGCGTGCATTTCTGGCATCGCATGGATTAT
ATCTCCATCTCGGCGTACTTCCGGCTGATGGACGGCGTGCGCGGCCCTTC
GCCGGATATGAACCGCACCAAGGCCATGTGGCAACACATCTCGGACGACA
TTCTCGATTGGCGTGTGTGGCGCAACTTTTCGCACAAGCAGGTGCTGGTG
GCCGAGGTGGGCGCGCAAAGCAAAGGTGATGGAATCGTGTATCGCGTGCC
ATGGGACTGGAATATCGCCGCGCCAGTTGACTTTAACGAACAGGTGAAAA
TGTACGAGGGCATCTGCTCAGCGTTCATGCCACACGACTGGATTGCCGGC
ATCGTGTTCTGGAACTGGGAGCTACAACCGCATGCCGGAACGTACCAACC
GGGAATTGCGGGCTACACGCCGCAGAACAAGCCCGCGTTACAAGTCATCC
GACGTTACTTTGCGTCCACATAG
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