Ggra1785.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1785.t1
Unique NameGgra1785.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:616476..617279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708358.1
Preferred nameTSN
PFAMsTranslin
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K04500,ko:K05287
KEGG ReactionR05923,R05924,R08107
KEGG Pathwayko00563,ko01100,ko04068,ko04110,ko04144,ko04218,ko04350,ko04371,ko04390,ko04520,ko04550,ko04659,ko04926,ko04933,ko05142,ko05166,ko05200,ko05210,ko05212,ko05225,ko05226,ko05321,map00563,map01100,map04068,map04110,map04144,map04218,map04350,map04371,map04390,map04520,map04550,map04659,map04926,map04933,map05142,map05166,map05200,map05210,map05212,map05225,map05226,map05321
KEGG ModuleM00065,M00680,M00681
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0008033,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0019222,GO:0031047,GO:0031647,GO:0031667,GO:0034470,GO:0034641,GO:0034660,GO:0035194,GO:0035939,GO:0040029,GO:0042162,GO:0042321,GO:0042594,GO:0042595,GO:0042749,GO:0042752,GO:0042754,GO:0042802,GO:0042803,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045187,GO:0046483,GO:0046983,GO:0048519,GO:0048521,GO:0050789,GO:0050795,GO:0050821,GO:0050896,GO:0051239,GO:0051241,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098847,GO:0140098,GO:1901360,GO:1901363,GO:1990605,GO:1990837
Evalue1.01e-29
EggNOG OGsKOG3067@1|root,KOG3067@2759|Eukaryota
Descriptionsingle-stranded DNA binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1785Ggra1785Gracilaria gracilis GNS1m malegenetig00000050_pilon 616476..617279 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1785.t1.start1Ggra1785.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 616476..616478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1785.t1.CDS1Ggra1785.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 616476..617279 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1785.t1.exon1Ggra1785.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 616476..617279 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1785.t1.stop1Ggra1785.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 617277..617279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1785.t1Ggra1785.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 616476..617279 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1785.t1 ID=Ggra1785.t1|Name=Ggra1785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MTEIGKVFDSLSDAFAAQDVIRERIRAKRDEAHVVIHSAVRSVQTLVRSA
DLSDGIEEAKKALLKTGPAVKAIEDVLPSDPGCIHRYVDFWHHQLQSIAM
VCAVVDALSGGTLTQLDEISFKIGASIHIPLEHYLGGICQSLSELTRLSR
NRVIRQDYETPIACFRFASYVFDGLKQLNLKNDFLRKKYDGVKYEVNHME
NIMYDLTIRGLASNSKKRPAESDIAPPARKANHTKDHMIVSPANEEKEAP
LETAMTDDDLNGKGAKN*
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spliced messenger RNA

>Ggra1785.t1 ID=Ggra1785.t1|Name=Ggra1785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:616476..617279+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAAATCGGAAAGGTATTTGATTCGTTGAGCGATGCATTCGCTGC
TCAAGATGTGATTCGTGAGAGAATACGTGCGAAGCGCGACGAAGCTCATG
TTGTGATACATTCGGCAGTGCGTTCTGTCCAAACTCTTGTGCGCTCTGCG
GACCTTTCAGACGGAATAGAAGAAGCCAAGAAAGCGCTTTTGAAGACGGG
GCCTGCTGTTAAGGCAATCGAGGACGTGTTGCCCTCTGACCCGGGATGCA
TTCATCGCTACGTCGATTTCTGGCATCATCAACTGCAATCGATTGCCATG
GTATGCGCCGTCGTCGATGCCCTCTCAGGCGGCACCTTGACGCAACTCGA
TGAGATTAGCTTCAAGATTGGGGCAAGTATTCACATCCCTCTTGAACACT
ACCTCGGTGGAATATGCCAGTCCTTATCGGAACTCACTCGCCTGTCGCGA
AATCGCGTCATTCGCCAGGATTACGAGACTCCCATTGCTTGTTTTCGTTT
TGCGTCGTATGTGTTTGATGGGCTCAAGCAGCTTAATCTCAAGAACGATT
TCTTGCGAAAGAAGTATGACGGCGTCAAATACGAGGTCAACCACATGGAG
AATATAATGTATGACCTCACTATCAGAGGTTTGGCTTCAAACAGCAAGAA
GAGACCGGCGGAGAGTGATATTGCACCACCAGCCCGGAAAGCCAACCATA
CAAAGGATCACATGATTGTCAGTCCTGCTAATGAGGAGAAAGAAGCGCCG
CTCGAGACTGCAATGACCGATGATGACCTGAACGGCAAAGGAGCCAAAAA
CTGA
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protein sequence of Ggra1785.t1

>Ggra1785.t1 ID=Ggra1785.t1|Name=Ggra1785.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MTEIGKVFDSLSDAFAAQDVIRERIRAKRDEAHVVIHSAVRSVQTLVRSA
DLSDGIEEAKKALLKTGPAVKAIEDVLPSDPGCIHRYVDFWHHQLQSIAM
VCAVVDALSGGTLTQLDEISFKIGASIHIPLEHYLGGICQSLSELTRLSR
NRVIRQDYETPIACFRFASYVFDGLKQLNLKNDFLRKKYDGVKYEVNHME
NIMYDLTIRGLASNSKKRPAESDIAPPARKANHTKDHMIVSPANEEKEAP
LETAMTDDDLNGKGAKN*
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mRNA from alignment at tig00000050_pilon:616476..617279+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1785.t1 ID=Ggra1785.t1|Name=Ggra1785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:616476..617279+ (Gracilaria gracilis GNS1m male)
ATGACAGAAATCGGAAAGGTATTTGATTCGTTGAGCGATGCATTCGCTGC
TCAAGATGTGATTCGTGAGAGAATACGTGCGAAGCGCGACGAAGCTCATG
TTGTGATACATTCGGCAGTGCGTTCTGTCCAAACTCTTGTGCGCTCTGCG
GACCTTTCAGACGGAATAGAAGAAGCCAAGAAAGCGCTTTTGAAGACGGG
GCCTGCTGTTAAGGCAATCGAGGACGTGTTGCCCTCTGACCCGGGATGCA
TTCATCGCTACGTCGATTTCTGGCATCATCAACTGCAATCGATTGCCATG
GTATGCGCCGTCGTCGATGCCCTCTCAGGCGGCACCTTGACGCAACTCGA
TGAGATTAGCTTCAAGATTGGGGCAAGTATTCACATCCCTCTTGAACACT
ACCTCGGTGGAATATGCCAGTCCTTATCGGAACTCACTCGCCTGTCGCGA
AATCGCGTCATTCGCCAGGATTACGAGACTCCCATTGCTTGTTTTCGTTT
TGCGTCGTATGTGTTTGATGGGCTCAAGCAGCTTAATCTCAAGAACGATT
TCTTGCGAAAGAAGTATGACGGCGTCAAATACGAGGTCAACCACATGGAG
AATATAATGTATGACCTCACTATCAGAGGTTTGGCTTCAAACAGCAAGAA
GAGACCGGCGGAGAGTGATATTGCACCACCAGCCCGGAAAGCCAACCATA
CAAAGGATCACATGATTGTCAGTCCTGCTAATGAGGAGAAAGAAGCGCCG
CTCGAGACTGCAATGACCGATGATGACCTGAACGGCAAAGGAGCCAAAAA
CTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:616476..617279+

>Ggra1785.t1 ID=Ggra1785.t1|Name=Ggra1785.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:616476..617279+ (Gracilaria gracilis GNS1m male)
ATGACAGAAATCGGAAAGGTATTTGATTCGTTGAGCGATGCATTCGCTGC
TCAAGATGTGATTCGTGAGAGAATACGTGCGAAGCGCGACGAAGCTCATG
TTGTGATACATTCGGCAGTGCGTTCTGTCCAAACTCTTGTGCGCTCTGCG
GACCTTTCAGACGGAATAGAAGAAGCCAAGAAAGCGCTTTTGAAGACGGG
GCCTGCTGTTAAGGCAATCGAGGACGTGTTGCCCTCTGACCCGGGATGCA
TTCATCGCTACGTCGATTTCTGGCATCATCAACTGCAATCGATTGCCATG
GTATGCGCCGTCGTCGATGCCCTCTCAGGCGGCACCTTGACGCAACTCGA
TGAGATTAGCTTCAAGATTGGGGCAAGTATTCACATCCCTCTTGAACACT
ACCTCGGTGGAATATGCCAGTCCTTATCGGAACTCACTCGCCTGTCGCGA
AATCGCGTCATTCGCCAGGATTACGAGACTCCCATTGCTTGTTTTCGTTT
TGCGTCGTATGTGTTTGATGGGCTCAAGCAGCTTAATCTCAAGAACGATT
TCTTGCGAAAGAAGTATGACGGCGTCAAATACGAGGTCAACCACATGGAG
AATATAATGTATGACCTCACTATCAGAGGTTTGGCTTCAAACAGCAAGAA
GAGACCGGCGGAGAGTGATATTGCACCACCAGCCCGGAAAGCCAACCATA
CAAAGGATCACATGATTGTCAGTCCTGCTAATGAGGAGAAAGAAGCGCCG
CTCGAGACTGCAATGACCGATGATGACCTGAACGGCAAAGGAGCCAAAAA
CTGA
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