Ggra947.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra947.t1
Unique NameGgra947.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:907169..907670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog128390.XP_009462273.1
Preferred nameSNRPF
PFAMsLSM
Max annot lvl33208|Metazoa
KEGG koko:K11098
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005683,GO:0005684,GO:0005685,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Evalue6.54e-34
EggNOG OGsKOG3482@1|root,KOG3482@2759|Eukaryota,3A5K1@33154|Opisthokonta,3BRDZ@33208|Metazoa,3D86D@33213|Bilateria,48FA6@7711|Chordata,49C8D@7742|Vertebrata,4GVF6@8782|Aves
DescriptionSmall nuclear ribonucleoprotein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra947Ggra947Gracilaria gracilis GNS1m malegenetig00000049_pilon 907169..907670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1Ggra947.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 907169..907670 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1.stop1Ggra947.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 907169..907171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1.CDS1Ggra947.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 907169..907380 -
Ggra947.t1.CDS2Ggra947.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 907470..907566 -
Ggra947.t1.CDS3Ggra947.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000049_pilon 907668..907670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1.exon1Ggra947.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 907169..907380 -
Ggra947.t1.exon2Ggra947.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 907470..907566 -
Ggra947.t1.exon3Ggra947.t1.exon3Gracilaria gracilis GNS1m maleexontig00000049_pilon 907668..907670 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1.intron1Ggra947.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 907381..907469 -
Ggra947.t1.intron2Ggra947.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000049_pilon 907567..907667 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra947.t1.start1Ggra947.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 907668..907670 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra947.t1 ID=Ggra947.t1|Name=Ggra947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENS
EEWVDGAMDGELGEILIRCNNVLYIRPGLAASQAVDDAATAATAAAAAKR
SAT*
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spliced messenger RNA

>Ggra947.t1 ID=Ggra947.t1|Name=Ggra947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000049_pilon:907169..907670- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCAAATCGTCGCATATCAACCCCAAGCCGTTCCTGCTCTCACT
CACAGGCAAGCCTGTGATCGTGAAGCTCAAGTGGGGCCTCGAGTATCGCG
GCTACCTCAAGTCGGTGGACAACTACATGAACCTCCAGCTGGAGAACTCG
GAGGAGTGGGTAGACGGCGCCATGGACGGTGAACTAGGCGAAATTCTCAT
CCGCTGCAACAACGTGCTGTACATCCGCCCGGGGCTGGCAGCCTCCCAGG
CCGTGGACGATGCCGCCACCGCCGCCACCGCCGCCGCCGCCGCCAAGCGC
AGCGCTACATAA
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protein sequence of Ggra947.t1

>Ggra947.t1 ID=Ggra947.t1|Name=Ggra947.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MASKSSHINPKPFLLSLTGKPVIVKLKWGLEYRGYLKSVDNYMNLQLENS
EEWVDGAMDGELGEILIRCNNVLYIRPGLAASQAVDDAATAATAAAAAKR
SAT*
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mRNA from alignment at tig00000049_pilon:907169..907670-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra947.t1 ID=Ggra947.t1|Name=Ggra947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=502bp|location=Sequence derived from alignment at tig00000049_pilon:907169..907670- (Gracilaria gracilis GNS1m male)
ATGGTAAGTTACTCCCGTCCCGCGCCGGTGCGCGCGTTCCGCCTTTCCAA
CGAGCGAGCAACGTAAAACTAACAGCTCCCACGAACCCGCGCCGCGCGCC
ACAGGCCAGCAAATCGTCGCATATCAACCCCAAGCCGTTCCTGCTCTCAC
TCACAGGCAAGCCTGTGATCGTGAAGCTCAAGTGGGGCCTCGAGTATCGC
GGTAAGTAAGCACCGCCAAGCGCGCGCGCTCGCACAAGCTGCTCTGACAT
TCGTTGCGCTTTTCGTGCGCGCTGCGCGTCGCGGCTACAGGCTACCTCAA
GTCGGTGGACAACTACATGAACCTCCAGCTGGAGAACTCGGAGGAGTGGG
TAGACGGCGCCATGGACGGTGAACTAGGCGAAATTCTCATCCGCTGCAAC
AACGTGCTGTACATCCGCCCGGGGCTGGCAGCCTCCCAGGCCGTGGACGA
TGCCGCCACCGCCGCCACCGCCGCCGCCGCCGCCAAGCGCAGCGCTACAT
AA
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Coding sequence (CDS) from alignment at tig00000049_pilon:907169..907670-

>Ggra947.t1 ID=Ggra947.t1|Name=Ggra947.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000049_pilon:907169..907670- (Gracilaria gracilis GNS1m male)
ATGGCCAGCAAATCGTCGCATATCAACCCCAAGCCGTTCCTGCTCTCACT
CACAGGCAAGCCTGTGATCGTGAAGCTCAAGTGGGGCCTCGAGTATCGCG
GCTACCTCAAGTCGGTGGACAACTACATGAACCTCCAGCTGGAGAACTCG
GAGGAGTGGGTAGACGGCGCCATGGACGGTGAACTAGGCGAAATTCTCAT
CCGCTGCAACAACGTGCTGTACATCCGCCCGGGGCTGGCAGCCTCCCAGG
CCGTGGACGATGCCGCCACCGCCGCCACCGCCGCCGCCGCCGCCAAGCGC
AGCGCTACATAA
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