Ggra936.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra936.t2
Unique NameGgra936.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:800859..801979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra936Ggra936Gracilaria gracilis GNS1m malegenetig00000049_pilon 800859..802088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra936.t2Ggra936.t2Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 800859..801979 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra936.t2.start1Ggra936.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 800859..800861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra936.t2.CDS1Ggra936.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 800859..801827 +
Ggra936.t2.CDS2Ggra936.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 801959..801979 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra936.t2.exon1Ggra936.t2.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 800859..801827 +
Ggra936.t2.exon2Ggra936.t2.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 801959..801979 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra936.t2.intron1Ggra936.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 801828..801958 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra936.t2.stop1Ggra936.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 801977..801979 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra936.t2 ID=Ggra936.t2|Name=Ggra936.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
MGVGAVHEPIVFGQDFSPYFKLGVSRCIHVDEVQDIETLAGDLVEDAHGL
LNRDEGRTATIDYGHVYCISYRHLDDASKEFEGLCMALHAAAEITLARGG
RMFWVWMDKLLRHHTRSSCCWAFYGLLPYAYFPVIAVRSMDEDEGERMWL
LAEERLGYGNMGIFWIDTQAASLRYIAGVSRGPENAIRIYLRYIRTGEAA
EEKTFHAIDKERFERLADTHGIADDEEDILVSLKGSKQESSVMNEVSEIW
WHSIVAVESYASLRNREVRVDEIVFDRVRGVPFDGYREWFRWNEERLYEA
VQSRRRRYDETWMAHLGHRDSYIGATSIH*
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spliced messenger RNA

>Ggra936.t2 ID=Ggra936.t2|Name=Ggra936.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000049_pilon:800859..801979+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTAGGGGCCGTGCATGAGCCCATCGTGTTTGGGCAGGACTTCAG
CCCATACTTCAAATTGGGTGTTTCGCGATGTATACATGTCGACGAGGTTC
AAGACATAGAAACTCTTGCAGGAGATCTTGTCGAAGACGCTCATGGGCTT
CTCAACAGAGATGAAGGGCGCACTGCCACAATCGACTATGGTCATGTATA
CTGCATTTCGTATCGTCATCTCGATGATGCCTCGAAAGAGTTTGAGGGTC
TGTGTATGGCGCTGCACGCCGCAGCAGAAATCACTTTGGCACGCGGAGGA
CGCATGTTCTGGGTGTGGATGGATAAACTTTTGAGGCATCACACTCGGAG
CTCATGTTGTTGGGCGTTTTACGGCTTGCTCCCCTATGCCTACTTTCCCG
TCATTGCCGTACGTAGCATGGACGAGGATGAGGGCGAAAGGATGTGGCTA
CTGGCCGAAGAACGACTGGGCTACGGTAACATGGGCATTTTCTGGATTGA
TACACAGGCTGCATCTCTGAGATACATCGCAGGGGTCAGCAGAGGGCCAG
AGAATGCGATAAGAATCTACCTGAGATATATCAGAACAGGTGAGGCTGCG
GAAGAGAAAACATTTCACGCGATTGACAAGGAGCGATTTGAAAGATTGGC
TGATACTCATGGAATCGCGGATGACGAGGAGGATATTTTGGTCAGCCTGA
AGGGGTCGAAGCAAGAGAGCAGTGTGATGAATGAGGTCTCTGAAATTTGG
TGGCATAGTATTGTGGCTGTGGAGTCGTATGCCAGTCTGCGTAACAGGGA
AGTAAGAGTAGATGAAATCGTGTTCGACAGAGTCAGAGGCGTTCCTTTTG
ATGGGTACAGAGAATGGTTCAGATGGAATGAGGAACGTCTTTATGAAGCG
GTTCAAAGTCGTCGACGGCGTTACGATGAAACATGGATGGCGCATCTTGG
GCATCGCGATAGTTACATTGGTGCAACTTCGATACACTGA
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protein sequence of Ggra936.t2

>Ggra936.t2 ID=Ggra936.t2|Name=Ggra936.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MGVGAVHEPIVFGQDFSPYFKLGVSRCIHVDEVQDIETLAGDLVEDAHGL
LNRDEGRTATIDYGHVYCISYRHLDDASKEFEGLCMALHAAAEITLARGG
RMFWVWMDKLLRHHTRSSCCWAFYGLLPYAYFPVIAVRSMDEDEGERMWL
LAEERLGYGNMGIFWIDTQAASLRYIAGVSRGPENAIRIYLRYIRTGEAA
EEKTFHAIDKERFERLADTHGIADDEEDILVSLKGSKQESSVMNEVSEIW
WHSIVAVESYASLRNREVRVDEIVFDRVRGVPFDGYREWFRWNEERLYEA
VQSRRRRYDETWMAHLGHRDSYIGATSIH*
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mRNA from alignment at tig00000049_pilon:800859..801979+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra936.t2 ID=Ggra936.t2|Name=Ggra936.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1121bp|location=Sequence derived from alignment at tig00000049_pilon:800859..801979+ (Gracilaria gracilis GNS1m male)
ATGGGAGTAGGGGCCGTGCATGAGCCCATCGTGTTTGGGCAGGACTTCAG
CCCATACTTCAAATTGGGTGTTTCGCGATGTATACATGTCGACGAGGTTC
AAGACATAGAAACTCTTGCAGGAGATCTTGTCGAAGACGCTCATGGGCTT
CTCAACAGAGATGAAGGGCGCACTGCCACAATCGACTATGGTCATGTATA
CTGCATTTCGTATCGTCATCTCGATGATGCCTCGAAAGAGTTTGAGGGTC
TGTGTATGGCGCTGCACGCCGCAGCAGAAATCACTTTGGCACGCGGAGGA
CGCATGTTCTGGGTGTGGATGGATAAACTTTTGAGGCATCACACTCGGAG
CTCATGTTGTTGGGCGTTTTACGGCTTGCTCCCCTATGCCTACTTTCCCG
TCATTGCCGTACGTAGCATGGACGAGGATGAGGGCGAAAGGATGTGGCTA
CTGGCCGAAGAACGACTGGGCTACGGTAACATGGGCATTTTCTGGATTGA
TACACAGGCTGCATCTCTGAGATACATCGCAGGGGTCAGCAGAGGGCCAG
AGAATGCGATAAGAATCTACCTGAGATATATCAGAACAGGTGAGGCTGCG
GAAGAGAAAACATTTCACGCGATTGACAAGGAGCGATTTGAAAGATTGGC
TGATACTCATGGAATCGCGGATGACGAGGAGGATATTTTGGTCAGCCTGA
AGGGGTCGAAGCAAGAGAGCAGTGTGATGAATGAGGTCTCTGAAATTTGG
TGGCATAGTATTGTGGCTGTGGAGTCGTATGCCAGTCTGCGTAACAGGGA
AGTAAGAGTAGATGAAATCGTGTTCGACAGAGTCAGAGGCGTTCCTTTTG
ATGGGTACAGAGAATGGTTCAGATGGAATGAGGAACGTCTTTATGAAGCG
GTTCAAAGTCGTCGACGGCGTTACGATGAAACATGGATGGCGCATCTTGG
GCATCGCGATAGTTACATTGTGAGTTGTGAGAAAGCCACATCAGTTGTGA
TGCTATATCGCGAGAACACGGGCCTCTTGGATCGCGTAGCGTGTATATGT
ATGGATGTGGAATCATTGGGAGATGCGTTCAAGATTCGAGGCGTGCGAAG
GGTGCAACTTCGATACACTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:800859..801979+

>Ggra936.t2 ID=Ggra936.t2|Name=Ggra936.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000049_pilon:800859..801979+ (Gracilaria gracilis GNS1m male)
ATGGGAGTAGGGGCCGTGCATGAGCCCATCGTGTTTGGGCAGGACTTCAG
CCCATACTTCAAATTGGGTGTTTCGCGATGTATACATGTCGACGAGGTTC
AAGACATAGAAACTCTTGCAGGAGATCTTGTCGAAGACGCTCATGGGCTT
CTCAACAGAGATGAAGGGCGCACTGCCACAATCGACTATGGTCATGTATA
CTGCATTTCGTATCGTCATCTCGATGATGCCTCGAAAGAGTTTGAGGGTC
TGTGTATGGCGCTGCACGCCGCAGCAGAAATCACTTTGGCACGCGGAGGA
CGCATGTTCTGGGTGTGGATGGATAAACTTTTGAGGCATCACACTCGGAG
CTCATGTTGTTGGGCGTTTTACGGCTTGCTCCCCTATGCCTACTTTCCCG
TCATTGCCGTACGTAGCATGGACGAGGATGAGGGCGAAAGGATGTGGCTA
CTGGCCGAAGAACGACTGGGCTACGGTAACATGGGCATTTTCTGGATTGA
TACACAGGCTGCATCTCTGAGATACATCGCAGGGGTCAGCAGAGGGCCAG
AGAATGCGATAAGAATCTACCTGAGATATATCAGAACAGGTGAGGCTGCG
GAAGAGAAAACATTTCACGCGATTGACAAGGAGCGATTTGAAAGATTGGC
TGATACTCATGGAATCGCGGATGACGAGGAGGATATTTTGGTCAGCCTGA
AGGGGTCGAAGCAAGAGAGCAGTGTGATGAATGAGGTCTCTGAAATTTGG
TGGCATAGTATTGTGGCTGTGGAGTCGTATGCCAGTCTGCGTAACAGGGA
AGTAAGAGTAGATGAAATCGTGTTCGACAGAGTCAGAGGCGTTCCTTTTG
ATGGGTACAGAGAATGGTTCAGATGGAATGAGGAACGTCTTTATGAAGCG
GTTCAAAGTCGTCGACGGCGTTACGATGAAACATGGATGGCGCATCTTGG
GCATCGCGATAGTTACATTGGTGCAACTTCGATACACTGA
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