Ggra929.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra929.t1
Unique NameGgra929.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:650456..651988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra929Ggra929Gracilaria gracilis GNS1m malegenetig00000049_pilon 650456..651988 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra929.t1.stop1Ggra929.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 650456..650458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra929.t1.CDS1Ggra929.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 650456..651988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra929.t1.exon1Ggra929.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 650456..651988 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra929.t1.start1Ggra929.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 651986..651988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra929.t1Ggra929.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 650456..651988 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra929.t1 ID=Ggra929.t1|Name=Ggra929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MSSSSDFPLDIHPSWWNVLKFVILSLIITPLLEFLFQRMLSTLVTYHAIC
GRPIPLFDTNLGIFSLHSGYWGRHRNITVLLAPGLVLLATDVLFEFSFST
ASVDVPRQMVLWSQPSHRQRYLATDDVIIQREPTAFPDQAAQECLEGPSI
MLRRNGSALLGPTFAHILGPFEYILDGKYQIRQPFLDQQNYTVWCSLDYT
VANATILVPGVYGKTDFETEGYDLSRDHGLENMEQWKQIVLEADMVSKGE
LRFDGFQAKFFVGAKSVCVHGDNHMRHSLCMLRNNSDVALVRSRVLNSND
FSTILGVVMHFSGPAVRRLSEPGRQIRFLAYILEKRALSSDLSRGHAAAT
VRKHVLEQIAKAALVIANEKGVGGIREFRMKLPVRFDSRQIAVAKDFVTI
PLALLCLLFVAILLIDVSFRIRIERKDKKFGGTWRWSSLLRREHIEFSKQ
WLREKLANDLVLYNMHQDVQSSDIGPWVELGERSHEWHVLPHPCSHVRPK
ARISSDRSGV*
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spliced messenger RNA

>Ggra929.t1 ID=Ggra929.t1|Name=Ggra929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000049_pilon:650456..651988- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCATCTTCAGATTTTCCTCTCGATATTCACCCTTCATGGTGGAA
TGTTCTTAAGTTTGTCATCCTTAGTCTCATAATCACACCCCTGCTTGAAT
TCCTCTTCCAACGCATGCTGAGTACGCTTGTTACGTATCACGCCATATGC
GGACGGCCTATACCTCTATTCGACACTAATCTCGGTATTTTCTCACTTCA
CAGTGGATATTGGGGTCGCCATCGAAATATAACCGTTCTACTAGCTCCCG
GTCTCGTTCTTCTGGCAACCGACGTGCTGTTTGAGTTTTCTTTTTCTACA
GCCTCTGTAGATGTTCCTAGACAAATGGTCTTATGGTCTCAACCAAGTCA
TCGCCAAAGATATCTTGCTACGGATGACGTCATTATTCAGCGGGAACCGA
CAGCGTTCCCGGATCAGGCTGCTCAAGAATGTTTAGAAGGCCCTTCCATC
ATGCTGCGCAGAAATGGGTCTGCTCTACTTGGTCCGACTTTTGCCCATAT
CTTAGGGCCATTCGAATACATATTGGATGGAAAGTACCAGATTCGCCAAC
CCTTTCTGGACCAGCAGAACTATACTGTGTGGTGTAGCTTGGACTATACT
GTAGCAAACGCCACTATTTTGGTCCCTGGAGTGTATGGAAAAACGGATTT
TGAGACAGAGGGGTATGATTTGTCTCGGGACCATGGTTTGGAGAATATGG
AACAATGGAAGCAGATAGTATTGGAGGCGGACATGGTCTCCAAAGGAGAA
TTGCGGTTTGATGGCTTTCAAGCAAAGTTTTTCGTCGGGGCCAAATCTGT
GTGTGTGCATGGCGACAATCACATGCGTCATTCTCTTTGTATGTTGAGGA
ACAATTCGGATGTGGCACTTGTCAGGAGCAGGGTGCTAAATTCCAATGAT
TTCAGCACAATCCTTGGCGTTGTTATGCACTTTTCCGGTCCAGCAGTTCG
TCGTCTCTCAGAACCTGGGCGGCAGATAAGGTTTCTAGCCTACATACTGG
AAAAGAGGGCTTTATCATCAGATCTGAGCAGGGGACATGCAGCTGCCACA
GTGAGAAAGCACGTGCTTGAGCAAATTGCGAAGGCAGCATTGGTTATAGC
CAACGAGAAGGGAGTTGGTGGAATCCGTGAGTTCAGAATGAAGCTTCCCG
TTCGCTTTGATTCGCGTCAGATAGCTGTAGCAAAGGATTTTGTTACAATA
CCGCTGGCACTACTCTGCTTGTTATTCGTGGCGATTCTCTTGATCGACGT
CTCATTTCGAATACGGATTGAAAGGAAAGACAAAAAGTTTGGAGGAACAT
GGCGATGGAGTTCTCTTCTTCGTCGTGAACATATCGAATTCTCGAAACAG
TGGCTAAGGGAGAAGCTTGCAAATGACCTAGTACTATACAACATGCATCA
GGACGTTCAAAGCTCAGACATTGGCCCATGGGTTGAACTGGGTGAACGAA
GTCACGAGTGGCACGTTTTGCCGCATCCGTGTTCCCACGTGAGACCAAAG
GCACGAATCTCCAGTGACCGGAGTGGTGTGTGA
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protein sequence of Ggra929.t1

>Ggra929.t1 ID=Ggra929.t1|Name=Ggra929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MSSSSDFPLDIHPSWWNVLKFVILSLIITPLLEFLFQRMLSTLVTYHAIC
GRPIPLFDTNLGIFSLHSGYWGRHRNITVLLAPGLVLLATDVLFEFSFST
ASVDVPRQMVLWSQPSHRQRYLATDDVIIQREPTAFPDQAAQECLEGPSI
MLRRNGSALLGPTFAHILGPFEYILDGKYQIRQPFLDQQNYTVWCSLDYT
VANATILVPGVYGKTDFETEGYDLSRDHGLENMEQWKQIVLEADMVSKGE
LRFDGFQAKFFVGAKSVCVHGDNHMRHSLCMLRNNSDVALVRSRVLNSND
FSTILGVVMHFSGPAVRRLSEPGRQIRFLAYILEKRALSSDLSRGHAAAT
VRKHVLEQIAKAALVIANEKGVGGIREFRMKLPVRFDSRQIAVAKDFVTI
PLALLCLLFVAILLIDVSFRIRIERKDKKFGGTWRWSSLLRREHIEFSKQ
WLREKLANDLVLYNMHQDVQSSDIGPWVELGERSHEWHVLPHPCSHVRPK
ARISSDRSGV*
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mRNA from alignment at tig00000049_pilon:650456..651988-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra929.t1 ID=Ggra929.t1|Name=Ggra929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000049_pilon:650456..651988- (Gracilaria gracilis GNS1m male)
ATGTCATCATCTTCAGATTTTCCTCTCGATATTCACCCTTCATGGTGGAA
TGTTCTTAAGTTTGTCATCCTTAGTCTCATAATCACACCCCTGCTTGAAT
TCCTCTTCCAACGCATGCTGAGTACGCTTGTTACGTATCACGCCATATGC
GGACGGCCTATACCTCTATTCGACACTAATCTCGGTATTTTCTCACTTCA
CAGTGGATATTGGGGTCGCCATCGAAATATAACCGTTCTACTAGCTCCCG
GTCTCGTTCTTCTGGCAACCGACGTGCTGTTTGAGTTTTCTTTTTCTACA
GCCTCTGTAGATGTTCCTAGACAAATGGTCTTATGGTCTCAACCAAGTCA
TCGCCAAAGATATCTTGCTACGGATGACGTCATTATTCAGCGGGAACCGA
CAGCGTTCCCGGATCAGGCTGCTCAAGAATGTTTAGAAGGCCCTTCCATC
ATGCTGCGCAGAAATGGGTCTGCTCTACTTGGTCCGACTTTTGCCCATAT
CTTAGGGCCATTCGAATACATATTGGATGGAAAGTACCAGATTCGCCAAC
CCTTTCTGGACCAGCAGAACTATACTGTGTGGTGTAGCTTGGACTATACT
GTAGCAAACGCCACTATTTTGGTCCCTGGAGTGTATGGAAAAACGGATTT
TGAGACAGAGGGGTATGATTTGTCTCGGGACCATGGTTTGGAGAATATGG
AACAATGGAAGCAGATAGTATTGGAGGCGGACATGGTCTCCAAAGGAGAA
TTGCGGTTTGATGGCTTTCAAGCAAAGTTTTTCGTCGGGGCCAAATCTGT
GTGTGTGCATGGCGACAATCACATGCGTCATTCTCTTTGTATGTTGAGGA
ACAATTCGGATGTGGCACTTGTCAGGAGCAGGGTGCTAAATTCCAATGAT
TTCAGCACAATCCTTGGCGTTGTTATGCACTTTTCCGGTCCAGCAGTTCG
TCGTCTCTCAGAACCTGGGCGGCAGATAAGGTTTCTAGCCTACATACTGG
AAAAGAGGGCTTTATCATCAGATCTGAGCAGGGGACATGCAGCTGCCACA
GTGAGAAAGCACGTGCTTGAGCAAATTGCGAAGGCAGCATTGGTTATAGC
CAACGAGAAGGGAGTTGGTGGAATCCGTGAGTTCAGAATGAAGCTTCCCG
TTCGCTTTGATTCGCGTCAGATAGCTGTAGCAAAGGATTTTGTTACAATA
CCGCTGGCACTACTCTGCTTGTTATTCGTGGCGATTCTCTTGATCGACGT
CTCATTTCGAATACGGATTGAAAGGAAAGACAAAAAGTTTGGAGGAACAT
GGCGATGGAGTTCTCTTCTTCGTCGTGAACATATCGAATTCTCGAAACAG
TGGCTAAGGGAGAAGCTTGCAAATGACCTAGTACTATACAACATGCATCA
GGACGTTCAAAGCTCAGACATTGGCCCATGGGTTGAACTGGGTGAACGAA
GTCACGAGTGGCACGTTTTGCCGCATCCGTGTTCCCACGTGAGACCAAAG
GCACGAATCTCCAGTGACCGGAGTGGTGTGTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:650456..651988-

>Ggra929.t1 ID=Ggra929.t1|Name=Ggra929.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000049_pilon:650456..651988- (Gracilaria gracilis GNS1m male)
ATGTCATCATCTTCAGATTTTCCTCTCGATATTCACCCTTCATGGTGGAA
TGTTCTTAAGTTTGTCATCCTTAGTCTCATAATCACACCCCTGCTTGAAT
TCCTCTTCCAACGCATGCTGAGTACGCTTGTTACGTATCACGCCATATGC
GGACGGCCTATACCTCTATTCGACACTAATCTCGGTATTTTCTCACTTCA
CAGTGGATATTGGGGTCGCCATCGAAATATAACCGTTCTACTAGCTCCCG
GTCTCGTTCTTCTGGCAACCGACGTGCTGTTTGAGTTTTCTTTTTCTACA
GCCTCTGTAGATGTTCCTAGACAAATGGTCTTATGGTCTCAACCAAGTCA
TCGCCAAAGATATCTTGCTACGGATGACGTCATTATTCAGCGGGAACCGA
CAGCGTTCCCGGATCAGGCTGCTCAAGAATGTTTAGAAGGCCCTTCCATC
ATGCTGCGCAGAAATGGGTCTGCTCTACTTGGTCCGACTTTTGCCCATAT
CTTAGGGCCATTCGAATACATATTGGATGGAAAGTACCAGATTCGCCAAC
CCTTTCTGGACCAGCAGAACTATACTGTGTGGTGTAGCTTGGACTATACT
GTAGCAAACGCCACTATTTTGGTCCCTGGAGTGTATGGAAAAACGGATTT
TGAGACAGAGGGGTATGATTTGTCTCGGGACCATGGTTTGGAGAATATGG
AACAATGGAAGCAGATAGTATTGGAGGCGGACATGGTCTCCAAAGGAGAA
TTGCGGTTTGATGGCTTTCAAGCAAAGTTTTTCGTCGGGGCCAAATCTGT
GTGTGTGCATGGCGACAATCACATGCGTCATTCTCTTTGTATGTTGAGGA
ACAATTCGGATGTGGCACTTGTCAGGAGCAGGGTGCTAAATTCCAATGAT
TTCAGCACAATCCTTGGCGTTGTTATGCACTTTTCCGGTCCAGCAGTTCG
TCGTCTCTCAGAACCTGGGCGGCAGATAAGGTTTCTAGCCTACATACTGG
AAAAGAGGGCTTTATCATCAGATCTGAGCAGGGGACATGCAGCTGCCACA
GTGAGAAAGCACGTGCTTGAGCAAATTGCGAAGGCAGCATTGGTTATAGC
CAACGAGAAGGGAGTTGGTGGAATCCGTGAGTTCAGAATGAAGCTTCCCG
TTCGCTTTGATTCGCGTCAGATAGCTGTAGCAAAGGATTTTGTTACAATA
CCGCTGGCACTACTCTGCTTGTTATTCGTGGCGATTCTCTTGATCGACGT
CTCATTTCGAATACGGATTGAAAGGAAAGACAAAAAGTTTGGAGGAACAT
GGCGATGGAGTTCTCTTCTTCGTCGTGAACATATCGAATTCTCGAAACAG
TGGCTAAGGGAGAAGCTTGCAAATGACCTAGTACTATACAACATGCATCA
GGACGTTCAAAGCTCAGACATTGGCCCATGGGTTGAACTGGGTGAACGAA
GTCACGAGTGGCACGTTTTGCCGCATCCGTGTTCCCACGTGAGACCAAAG
GCACGAATCTCCAGTGACCGGAGTGGTGTGTGA
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