Ggra939.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra939.t1
Unique NameGgra939.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length377
Homology
BLAST of Ggra939.t1 vs. uniprot
Match: A0A2V3ID28 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID28_9FLOR)

HSP 1 Score: 400 bits (1029), Expect = 5.110e-136
Identity = 216/345 (62.61%), Postives = 262/345 (75.94%), Query Frame = 0
Query:    1 MVIVEFPSPTVSVAITLISALVELLLLNAIKNLNAIYECALLKRHRLVRIRSHMRRIRIVNVLVLIFFLALEAIYSTYSSPITTKTQLVEACVSVRPSVQTRFEQHQFWAEARTTVGSCLTVEGDVVSIRIGNYSVDSENMRVSCSKEVYFRFRINDTRELSTADSTLSCVPTEIEDYCVRAKIGENKNNNYNVLWITDEYNKYSIMDEKLPFRRTEVLFPVHEHLDFLARRMARNEDRYSIFLRNNVLLDAVNDSCVFEEEDGVPATSISTPIAIVLVTFWGISLVSFTLTTALNR-RRFYSVGNMLDVACKTRRASDDERYPIANASIRMTVE-NGSPHFVMC 343
            MVI+ FPSP VSVAIT+IS +VELLLL  +KN+N++YEC LL   R VRI SH+RRI IV+   LI FL LE  YST++ P TTK ++++ CVSVRPSVQTRFE+HQF AEART V SCL+VEGD VSIRIGN+S++S NMRVSCSKEVYF+F+IND  EL+TA S LSC+  + ED CVRAK+G++K+N  NVLW+T  Y++ SI DEKL F +TEVLF   +HL F ARRM RNE  +++F RN+VLLDAVND+CVFEE DGV AT I TP+ +VLVT WG++L  FT+T    R  RFY++ N LD A KTRRASDDE YPIAN  I M    N S   VMC
Sbjct:    1 MVIIGFPSPVVSVAITMISLVVELLLLKTLKNINSVYECKLLACRRTVRIHSHVRRISIVSRFTLILFLTLEVNYSTFAFPTTTKNKVIKNCVSVRPSVQTRFEKHQFSAEARTAVASCLSVEGDEVSIRIGNFSLESRNMRVSCSKEVYFKFKINDEHELTTAKSELSCISKDFEDVCVRAKLGDSKDNE-NVLWLTYIYDELSIDDEKLLFTKTEVLFSFRDHLQFFARRMVRNEGAHNVFFRNDVLLDAVNDTCVFEE-DGVSATVIPTPVFVVLVTSWGVTLAGFTITALFLRGSRFYNIENALDFARKTRRASDDENYPIANPGIYMKKRTNSSDELVMC 343          
BLAST of Ggra939.t1 vs. uniprot
Match: A0A2V3IMC1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 113 bits (283), Expect = 8.800e-25
Identity = 95/330 (28.79%), Postives = 171/330 (51.82%), Query Frame = 0
Query:    1 MVIVEFPSPTVSVAITLISALVELLLLNAIKNLNAIYECALLKRHRLVRIRSHMRRIRIVNVLVLIFFLALEAIYSTYSSPITTKTQLVEACVSVRPSVQTRFEQHQFWAEARTTVGSCLTVEGDVVSIRIGNYSVDSENMRVSCSKEVYFRFRI---NDTRELSTADSTLSCVPTEIEDYCVRAKIGENKNNNYNVLWITDEYN---KYSIMDEKLPFRRTEVLFPVHEHLDFLARR-----MARNEDRYSIFLRNNVLLDAVNDSCVFEEEDGVPATSISTPIAIVLVTFWGISLVSFTLTTALNRRRFYSVGNMLDVACKTRRASDD 319
            MV +   +  VS+ IT+IS + E++ + A++ +N+I EC LLK+ + +R+R++  R +I+ ++  + FL LE I S +S P+  +    E CVSV   ++ +  Q +F  EA    G C T+ G+   +R+GN S+    +R  CSK+  + + I   ++T++L  + + +SC      + CV   + E +N+ Y    +  +     +   +D ++ F +TE+LF   E L   A R     + +  D +   LR  V L +   +C F EE  +  TS+   +   L+  W ++L+ F L   L R+ F+ VGN L  A + ++  D+
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVLRLQGPQGEF-READFIEGKCQTLRGNFNYVRVGNVSLSDGQVR--CSKKAAYFYDIVSASETKKLPVSTAEVSCKG----ETCVF--VFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFE--LRRRVFLGSAKKNCPFVEEV-IDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDE 318          
BLAST of Ggra939.t1 vs. uniprot
Match: A0A2V3J6F3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 111 bits (278), Expect = 3.560e-24
Identity = 94/324 (29.01%), Postives = 157/324 (48.46%), Query Frame = 0
Query:    1 MVIVEFPSPTVSVAITLISALVELLLLNAIKNLNAIYECALLKRHRLVRIRSHMRRIRIVNVLVLIFFLALEAIYSTYSSPITTKTQLVEACVSVRPSVQTRFEQHQFWAEARTTVGSCLTVEGDVVSIRIGNYSVDSENMRVSCSKEVYFRFRIND-TRELSTADSTLSCVPTEIEDYCVRAKIGENKNNNYNVLWITDEYNKYSIMDEKLPFRRTEVLFPVHEHLDFLARRMARNEDRYSI----FLRNNVLLDAVNDSCVFEEEDGVPATSISTPIAIVLVTFWGISLVSFTLTTALNRRRFYSVGNMLDVACKTRRASDD 319
            MV++   +P VSV +T++S L EL LL+ +  LN ++EC  L+R R V++R H+RR R+++V+ L  F ALE ++S Y+ P+      +  C++   SV+   +  QF   A   +  C  ++   ++   GN+S  S   +V CS E  +   + D T E   AD    CV    E     A +   +  N +++      ++ SI+ + LP   TE+ F    ++   A R A N    +I     LR  +   A  D C F    G  AT++   + + L   W ++L  F    AL R  F+ + + +  A ++ RA+DD
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITASNSVKDSGDSTQF-LRASDILVECRRLDNGTITQFGGNFS--SRTQQVECSTEAMYTHPLGDETSEEIVADVPFGCVSGGEEG---AACVFVQQRGNLSLISAPFFLDELSILPDTLPHIITELHFTPPSNVSLFATR-ATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRG-SATTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVRAADD 316          
BLAST of Ggra939.t1 vs. uniprot
Match: A0A2V3IUG0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG0_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 5.680e-8
Identity = 88/380 (23.16%), Postives = 158/380 (41.58%), Query Frame = 0
Query:    3 IVEFPSPTVSVAITLISALVELLLLNAIKNLNAIYECALLKRHRLVRIRSHMRRIRIVNVLVLIFFLALEAIYSTYSSPITTKTQLVEACVSVRPSVQ--TRFEQHQFWAEARTTVGSCL-TVEGDVVSIRIGNYSVDSENMRVSCSKEVYFRFRINDTRELSTADSTLSCVPTEIEDYCVRAKIGENKNNNYNVLWITDEYNKYSIMDEKLPF------------RRTEVLFPVHEHLDFLARRMARNEDRYSIF----LRNNVLLDAVNDSCVF----EEEDGVPATSISTPIAIVLVTFWGISLVSFTLTTALNRRRFYSVGNMLDVACKT--RRASDDERYPIANASIRMTVENGSPHFVMCDWEGEQQSSEEGGV 357
            I+  P+    +  T I+A+ E+  ++A   L  + EC  L  HR VR+ SH R  R+V V+ +I F+ALE + ST++ P T   +  + C  V  +       +  +        + SCL T   ++++I  G  S D+    V C++E  F++  ND               T+ E +  R ++G+  N  +  L   D       + + +P             + T + F V   +  +A ++    ++  +F    +R  +L+ +    C F    +E   +P   +      ++++ WG     F LT  L R  FY + N    AC T  +    D R    +A +R T  +G    +   +EG  ++S   G 
Sbjct:   17 IIPLPTLYTQLMFTAINAITEIGCVSATFVLIGLAECYALTTHRRVRLASHRRYHRVVQVVAMITFIALEVLISTFTKPHTHHIESKQNCTQVNRTENFLALNDSDERRMSEEMVLYSCLRTNSSNIINISTGVKSEDTG--AVQCNQEWIFQYE-NDR--------------TDHEQFSERDEVGKQCNEQFCTLVSLDRSGTRMFLSKPVPRASFDSDNNKIDGKWTNLNFNVQIDVKIMATKVLGLYEQ-GVFDELDVRRRLLVQSKKQECQFSSDRKEHSVLPFWLLG-----LIISMWGTCAFLFILTRVLKRGVFYDIDNPSHWACITDWQLIQGDRRKH--SAFLRSTTVDGVRR-IFVSFEGRTETSSRSGT 370          
The following BLAST results are available for this feature:
BLAST of Ggra939.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ID285.110e-13662.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMC18.800e-2528.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6F33.560e-2429.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUG05.680e-823.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..376
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..273
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 297..376
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..296
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 274..296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:877372..878502 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra939.t1Ggra939.t1Gracilaria gracilis GNS1m malemRNAtig00000049_pilon 877372..878502 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra939.t1 ID=Ggra939.t1|Name=Ggra939.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MVIVEFPSPTVSVAITLISALVELLLLNAIKNLNAIYECALLKRHRLVRI
RSHMRRIRIVNVLVLIFFLALEAIYSTYSSPITTKTQLVEACVSVRPSVQ
TRFEQHQFWAEARTTVGSCLTVEGDVVSIRIGNYSVDSENMRVSCSKEVY
FRFRINDTRELSTADSTLSCVPTEIEDYCVRAKIGENKNNNYNVLWITDE
YNKYSIMDEKLPFRRTEVLFPVHEHLDFLARRMARNEDRYSIFLRNNVLL
DAVNDSCVFEEEDGVPATSISTPIAIVLVTFWGISLVSFTLTTALNRRRF
YSVGNMLDVACKTRRASDDERYPIANASIRMTVENGSPHFVMCDWEGEQQ
SSEEGGVESPNRVMRDEEVVDLGHES*
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