Ggra927.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra927.t1
Unique Name	Ggra927.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	686

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:642877..645005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	46681.XP_001733663.1
PFAMs	LRR_5
Max annot lvl	2759\|Eukaryota
Evalue	2.21e-08
EggNOG OGs	28T7T@1\|root,2QZY2@2759\|Eukaryota
Description	protein kinase A regulatory subunit binding
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra927	Ggra927	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 642877..645005 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra927.t1	Ggra927.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 642877..645005 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra927.t1.start1	Ggra927.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 642877..642879 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra927.t1.CDS1	Ggra927.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 642877..643616 +
Ggra927.t1.CDS2	Ggra927.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 643688..645005 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra927.t1.exon1	Ggra927.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 642877..643616 +
Ggra927.t1.exon2	Ggra927.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 643688..645005 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra927.t1.intron1	Ggra927.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000049_pilon 643617..643687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra927.t1.stop1	Ggra927.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 645003..645005 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:642877..645005+
coding sequence from alignment at tig00000049_pilon:642877..645005+

mRNA sequence

>Ggra927.t1 ID=Ggra927.t1|Name=Ggra927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=686bp
MAASIIIVELMARGVLAAIGHQFDNTADAIEAVKLEVISMKGSMEKFRRD
MDEELSHLNDRLDEVFHAIQRLEYTAIREQMINTMESVQDSSVRERVLQV
SMVLYSLIHNTEIQEISIQVNRTLAPASSSEEGYEEPLISNTIEAVGTTT
SASQIAKKVMRLDREGLFSGVDHRAEDPLHIVINSASDENAKKNELIIAT
GALYILCQTLCVTIQDYRGVYATALGDGTFVQSETSPHDNACHISLRYCW
PTPVEFRRVEEFVQDMYEASGEAELSPIIEVIEERQKELRIRNVYLVGET
GEGKSTLGNDLIGTEEFYVSDAGTGTVKICGHLATPRGLLGGTHEVMVWD
TPGMNDQQGRDRIYEGLLYQHLTRENTVSTIIIVSKDGSRIPNTLINTME
VYRRAFGDAFTSSICVCIGMNQRKTKETKISAKFNFWANTLCEILRIPEG
SLHDKIIFYNADDEEPQPNQERLKQLILNAEVRLTGTGVAILQGLQKMRT
AKLKQEEKEAMFRASEEVCEAIRGELWNAPRVRFKRYPNFHGKASSISLE
ILPLLGTRFRAYFRHYILWKDNEEEEKAIIFNGIGERAVELLSKKFLTNP
EIYHGAKINLLTRYARKHELIVVNVGSKTRKARRGKIQEQTYNLLHLEDE
LDTSVYDEVDEILRVITVHPHYAATFGTFIPETEE*

spliced messenger RNA

>Ggra927.t1 ID=Ggra927.t1|Name=Ggra927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2058bp|location=Sequence derived from alignment at tig00000049_pilon:642877..645005+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTAGTATCATTATAGTGGAGCTTATGGCGAGGGGTGTTCTGGC
GGCCATTGGTCATCAGTTTGATAACACAGCTGATGCGATTGAAGCGGTAA
AGTTAGAAGTGATATCAATGAAAGGGAGTATGGAAAAGTTTCGCCGCGAT
ATGGATGAAGAACTTAGTCATCTGAATGACCGATTGGATGAAGTTTTCCA
TGCCATTCAAAGGCTGGAATATACAGCTATAAGGGAACAAATGATAAACA
CCATGGAGTCCGTTCAAGATTCTTCCGTTCGAGAACGAGTCCTTCAAGTT
TCAATGGTTCTTTATTCTCTCATCCACAATACTGAGATACAGGAGATTTC
TATTCAAGTGAACAGAACGCTTGCTCCGGCGTCTTCGTCTGAAGAAGGCT
ATGAGGAACCCTTGATATCCAACACGATCGAAGCTGTGGGTACTACGACT
TCAGCATCGCAAATAGCAAAAAAAGTAATGAGACTGGATAGAGAGGGATT
GTTTTCAGGTGTAGATCACCGCGCGGAAGACCCGCTGCACATCGTCATCA
ATTCAGCATCTGATGAAAACGCTAAGAAGAACGAGCTAATAATTGCCACA
GGCGCCCTCTACATTCTTTGCCAGACATTATGCGTCACAATCCAGGACTA
CAGAGGTGTGTATGCAACGGCCCTTGGGGATGGCACTTTTGTACAGAGCG
AGACTTCTCCACATGACAATGCATGCCATATTTCTCTTCGATACTGCTGG
CCTACCCCTGTCGAATTCAGACGGGTTGAAGAGTTCGTTCAGGATATGTA
TGAAGCAAGTGGTGAAGCGGAACTTTCTCCAATCATAGAGGTCATTGAAG
AGAGGCAAAAGGAGTTAAGGATTAGAAATGTGTATTTGGTTGGGGAAACA
GGAGAGGGGAAATCCACTTTGGGGAACGATCTGATCGGAACAGAAGAGTT
TTATGTATCTGACGCTGGAACTGGAACCGTGAAAATATGCGGGCATTTGG
CCACACCTAGGGGCCTTTTGGGTGGAACCCATGAGGTTATGGTTTGGGAT
ACTCCAGGAATGAACGACCAACAGGGTCGAGACAGGATCTATGAAGGCCT
GCTTTATCAGCACCTGACAAGAGAAAACACCGTATCCACTATCATCATTG
TTTCGAAAGATGGCTCGCGGATTCCAAACACCTTGATAAACACCATGGAA
GTCTATCGACGCGCTTTTGGGGATGCATTCACTTCTAGCATTTGTGTGTG
TATTGGGATGAATCAGCGTAAAACGAAAGAAACAAAAATCTCGGCGAAGT
TTAACTTCTGGGCAAACACATTGTGCGAGATTCTCAGAATTCCTGAGGGA
TCCCTCCATGACAAAATAATATTCTACAACGCAGACGATGAAGAACCGCA
ACCTAATCAAGAGAGGCTAAAGCAGCTCATACTTAATGCAGAAGTTCGCC
TCACTGGCACTGGCGTTGCTATTCTACAGGGACTGCAGAAAATGCGTACT
GCCAAGCTTAAACAGGAAGAAAAGGAAGCGATGTTCAGAGCTTCAGAGGA
AGTATGTGAAGCAATTAGAGGTGAGCTTTGGAACGCTCCTCGTGTAAGGT
TCAAACGGTATCCTAATTTTCATGGAAAAGCGTCCAGTATATCTCTGGAA
ATTCTTCCTTTGTTGGGGACTCGGTTCAGGGCGTATTTTCGTCATTACAT
TCTCTGGAAAGATAATGAAGAGGAGGAAAAGGCTATCATATTCAACGGCA
TAGGAGAAAGAGCAGTGGAGCTATTGTCCAAAAAGTTTCTGACGAACCCA
GAGATATATCATGGAGCCAAAATCAACCTTCTTACCCGATATGCTAGAAA
GCATGAACTTATTGTGGTTAATGTTGGTAGCAAAACCCGGAAAGCTAGGA
GAGGAAAAATCCAGGAGCAGACATACAATCTGCTACACTTAGAAGATGAG
CTGGACACAAGCGTCTATGATGAAGTTGACGAGATCTTGAGAGTGATCAC
TGTTCATCCTCATTATGCTGCAACATTTGGTACCTTTATTCCTGAAACAG
AGGAGTAG

protein sequence of Ggra927.t1

>Ggra927.t1 ID=Ggra927.t1|Name=Ggra927.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=686bp
MAASIIIVELMARGVLAAIGHQFDNTADAIEAVKLEVISMKGSMEKFRRD
MDEELSHLNDRLDEVFHAIQRLEYTAIREQMINTMESVQDSSVRERVLQV
SMVLYSLIHNTEIQEISIQVNRTLAPASSSEEGYEEPLISNTIEAVGTTT
SASQIAKKVMRLDREGLFSGVDHRAEDPLHIVINSASDENAKKNELIIAT
GALYILCQTLCVTIQDYRGVYATALGDGTFVQSETSPHDNACHISLRYCW
PTPVEFRRVEEFVQDMYEASGEAELSPIIEVIEERQKELRIRNVYLVGET
GEGKSTLGNDLIGTEEFYVSDAGTGTVKICGHLATPRGLLGGTHEVMVWD
TPGMNDQQGRDRIYEGLLYQHLTRENTVSTIIIVSKDGSRIPNTLINTME
VYRRAFGDAFTSSICVCIGMNQRKTKETKISAKFNFWANTLCEILRIPEG
SLHDKIIFYNADDEEPQPNQERLKQLILNAEVRLTGTGVAILQGLQKMRT
AKLKQEEKEAMFRASEEVCEAIRGELWNAPRVRFKRYPNFHGKASSISLE
ILPLLGTRFRAYFRHYILWKDNEEEEKAIIFNGIGERAVELLSKKFLTNP
EIYHGAKINLLTRYARKHELIVVNVGSKTRKARRGKIQEQTYNLLHLEDE
LDTSVYDEVDEILRVITVHPHYAATFGTFIPETEE*

mRNA from alignment at tig00000049_pilon:642877..645005+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra927.t1 ID=Ggra927.t1|Name=Ggra927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2129bp|location=Sequence derived from alignment at tig00000049_pilon:642877..645005+ (Gracilaria gracilis GNS1m male)
ATGGCTGCTAGTATCATTATAGTGGAGCTTATGGCGAGGGGTGTTCTGGC
GGCCATTGGTCATCAGTTTGATAACACAGCTGATGCGATTGAAGCGGTAA
AGTTAGAAGTGATATCAATGAAAGGGAGTATGGAAAAGTTTCGCCGCGAT
ATGGATGAAGAACTTAGTCATCTGAATGACCGATTGGATGAAGTTTTCCA
TGCCATTCAAAGGCTGGAATATACAGCTATAAGGGAACAAATGATAAACA
CCATGGAGTCCGTTCAAGATTCTTCCGTTCGAGAACGAGTCCTTCAAGTT
TCAATGGTTCTTTATTCTCTCATCCACAATACTGAGATACAGGAGATTTC
TATTCAAGTGAACAGAACGCTTGCTCCGGCGTCTTCGTCTGAAGAAGGCT
ATGAGGAACCCTTGATATCCAACACGATCGAAGCTGTGGGTACTACGACT
TCAGCATCGCAAATAGCAAAAAAAGTAATGAGACTGGATAGAGAGGGATT
GTTTTCAGGTGTAGATCACCGCGCGGAAGACCCGCTGCACATCGTCATCA
ATTCAGCATCTGATGAAAACGCTAAGAAGAACGAGCTAATAATTGCCACA
GGCGCCCTCTACATTCTTTGCCAGACATTATGCGTCACAATCCAGGACTA
CAGAGGTGTGTATGCAACGGCCCTTGGGGATGGCACTTTTGTACAGAGCG
AGACTTCTCCACATGACAATGCATGCCATATTTCTCTTCGGTAAGTCCAC
AGATTAATTGTTCATATGTATCATCTTTTGTTTGGTTCTGACTTGTTTCG
TACTTTCCAAGATACTGCTGGCCTACCCCTGTCGAATTCAGACGGGTTGA
AGAGTTCGTTCAGGATATGTATGAAGCAAGTGGTGAAGCGGAACTTTCTC
CAATCATAGAGGTCATTGAAGAGAGGCAAAAGGAGTTAAGGATTAGAAAT
GTGTATTTGGTTGGGGAAACAGGAGAGGGGAAATCCACTTTGGGGAACGA
TCTGATCGGAACAGAAGAGTTTTATGTATCTGACGCTGGAACTGGAACCG
TGAAAATATGCGGGCATTTGGCCACACCTAGGGGCCTTTTGGGTGGAACC
CATGAGGTTATGGTTTGGGATACTCCAGGAATGAACGACCAACAGGGTCG
AGACAGGATCTATGAAGGCCTGCTTTATCAGCACCTGACAAGAGAAAACA
CCGTATCCACTATCATCATTGTTTCGAAAGATGGCTCGCGGATTCCAAAC
ACCTTGATAAACACCATGGAAGTCTATCGACGCGCTTTTGGGGATGCATT
CACTTCTAGCATTTGTGTGTGTATTGGGATGAATCAGCGTAAAACGAAAG
AAACAAAAATCTCGGCGAAGTTTAACTTCTGGGCAAACACATTGTGCGAG
ATTCTCAGAATTCCTGAGGGATCCCTCCATGACAAAATAATATTCTACAA
CGCAGACGATGAAGAACCGCAACCTAATCAAGAGAGGCTAAAGCAGCTCA
TACTTAATGCAGAAGTTCGCCTCACTGGCACTGGCGTTGCTATTCTACAG
GGACTGCAGAAAATGCGTACTGCCAAGCTTAAACAGGAAGAAAAGGAAGC
GATGTTCAGAGCTTCAGAGGAAGTATGTGAAGCAATTAGAGGTGAGCTTT
GGAACGCTCCTCGTGTAAGGTTCAAACGGTATCCTAATTTTCATGGAAAA
GCGTCCAGTATATCTCTGGAAATTCTTCCTTTGTTGGGGACTCGGTTCAG
GGCGTATTTTCGTCATTACATTCTCTGGAAAGATAATGAAGAGGAGGAAA
AGGCTATCATATTCAACGGCATAGGAGAAAGAGCAGTGGAGCTATTGTCC
AAAAAGTTTCTGACGAACCCAGAGATATATCATGGAGCCAAAATCAACCT
TCTTACCCGATATGCTAGAAAGCATGAACTTATTGTGGTTAATGTTGGTA
GCAAAACCCGGAAAGCTAGGAGAGGAAAAATCCAGGAGCAGACATACAAT
CTGCTACACTTAGAAGATGAGCTGGACACAAGCGTCTATGATGAAGTTGA
CGAGATCTTGAGAGTGATCACTGTTCATCCTCATTATGCTGCAACATTTG
GTACCTTTATTCCTGAAACAGAGGAGTAG

Coding sequence (CDS) from alignment at tig00000049_pilon:642877..645005+

>Ggra927.t1 ID=Ggra927.t1|Name=Ggra927.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2058bp|location=Sequence derived from alignment at tig00000049_pilon:642877..645005+ (Gracilaria gracilis GNS1m male)
ATGGCTGCTAGTATCATTATAGTGGAGCTTATGGCGAGGGGTGTTCTGGC
GGCCATTGGTCATCAGTTTGATAACACAGCTGATGCGATTGAAGCGGTAA
AGTTAGAAGTGATATCAATGAAAGGGAGTATGGAAAAGTTTCGCCGCGAT
ATGGATGAAGAACTTAGTCATCTGAATGACCGATTGGATGAAGTTTTCCA
TGCCATTCAAAGGCTGGAATATACAGCTATAAGGGAACAAATGATAAACA
CCATGGAGTCCGTTCAAGATTCTTCCGTTCGAGAACGAGTCCTTCAAGTT
TCAATGGTTCTTTATTCTCTCATCCACAATACTGAGATACAGGAGATTTC
TATTCAAGTGAACAGAACGCTTGCTCCGGCGTCTTCGTCTGAAGAAGGCT
ATGAGGAACCCTTGATATCCAACACGATCGAAGCTGTGGGTACTACGACT
TCAGCATCGCAAATAGCAAAAAAAGTAATGAGACTGGATAGAGAGGGATT
GTTTTCAGGTGTAGATCACCGCGCGGAAGACCCGCTGCACATCGTCATCA
ATTCAGCATCTGATGAAAACGCTAAGAAGAACGAGCTAATAATTGCCACA
GGCGCCCTCTACATTCTTTGCCAGACATTATGCGTCACAATCCAGGACTA
CAGAGGTGTGTATGCAACGGCCCTTGGGGATGGCACTTTTGTACAGAGCG
AGACTTCTCCACATGACAATGCATGCCATATTTCTCTTCGATACTGCTGG
CCTACCCCTGTCGAATTCAGACGGGTTGAAGAGTTCGTTCAGGATATGTA
TGAAGCAAGTGGTGAAGCGGAACTTTCTCCAATCATAGAGGTCATTGAAG
AGAGGCAAAAGGAGTTAAGGATTAGAAATGTGTATTTGGTTGGGGAAACA
GGAGAGGGGAAATCCACTTTGGGGAACGATCTGATCGGAACAGAAGAGTT
TTATGTATCTGACGCTGGAACTGGAACCGTGAAAATATGCGGGCATTTGG
CCACACCTAGGGGCCTTTTGGGTGGAACCCATGAGGTTATGGTTTGGGAT
ACTCCAGGAATGAACGACCAACAGGGTCGAGACAGGATCTATGAAGGCCT
GCTTTATCAGCACCTGACAAGAGAAAACACCGTATCCACTATCATCATTG
TTTCGAAAGATGGCTCGCGGATTCCAAACACCTTGATAAACACCATGGAA
GTCTATCGACGCGCTTTTGGGGATGCATTCACTTCTAGCATTTGTGTGTG
TATTGGGATGAATCAGCGTAAAACGAAAGAAACAAAAATCTCGGCGAAGT
TTAACTTCTGGGCAAACACATTGTGCGAGATTCTCAGAATTCCTGAGGGA
TCCCTCCATGACAAAATAATATTCTACAACGCAGACGATGAAGAACCGCA
ACCTAATCAAGAGAGGCTAAAGCAGCTCATACTTAATGCAGAAGTTCGCC
TCACTGGCACTGGCGTTGCTATTCTACAGGGACTGCAGAAAATGCGTACT
GCCAAGCTTAAACAGGAAGAAAAGGAAGCGATGTTCAGAGCTTCAGAGGA
AGTATGTGAAGCAATTAGAGGTGAGCTTTGGAACGCTCCTCGTGTAAGGT
TCAAACGGTATCCTAATTTTCATGGAAAAGCGTCCAGTATATCTCTGGAA
ATTCTTCCTTTGTTGGGGACTCGGTTCAGGGCGTATTTTCGTCATTACAT
TCTCTGGAAAGATAATGAAGAGGAGGAAAAGGCTATCATATTCAACGGCA
TAGGAGAAAGAGCAGTGGAGCTATTGTCCAAAAAGTTTCTGACGAACCCA
GAGATATATCATGGAGCCAAAATCAACCTTCTTACCCGATATGCTAGAAA
GCATGAACTTATTGTGGTTAATGTTGGTAGCAAAACCCGGAAAGCTAGGA
GAGGAAAAATCCAGGAGCAGACATACAATCTGCTACACTTAGAAGATGAG
CTGGACACAAGCGTCTATGATGAAGTTGACGAGATCTTGAGAGTGATCAC
TGTTCATCCTCATTATGCTGCAACATTTGGTACCTTTATTCCTGAAACAG
AGGAGTAG