Ggra934.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra934.t1
Unique NameGgra934.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:789251..790081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000025374
PFAMsAIG1,MMR_HSR1
Max annot lvl121069|Pythiales
Evalue1.81e-30
EggNOG OGs28ND8@1|root,2QUYQ@2759|Eukaryota,1MI42@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra934Ggra934Gracilaria gracilis GNS1m malegenetig00000049_pilon 789251..790081 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra934.t1.stop1Ggra934.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 789251..789253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra934.t1.CDS1Ggra934.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 789251..790081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra934.t1.exon1Ggra934.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 789251..790081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra934.t1.start1Ggra934.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 790079..790081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra934.t1Ggra934.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 789251..790081 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra934.t1 ID=Ggra934.t1|Name=Ggra934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MDSTVGADSPGLLAQKASFRGSVALSYKMNGLLSLSYEGCSRKVPRYHWS
STSLKMRKMPMQEHVIVAGNPGSGKSSILNCIIGRVIFTSGVSLGSGFSA
LDTKYFNGVRYSDTPGLDDVGIRERAAAEISKAFRQGGRIKLIFVSTLES
GRLRPNDLATMTHILAAIREVNIDPSYNFSIIFNKCESEVLTLLQNAEGK
ARLEVPLLARAPAGKISYMPYVREAAGQTNFLVTRNASVYQDFISTAPMF
ELPRNDEFSVDAKGYDETVESLRGVL*
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spliced messenger RNA

>Ggra934.t1 ID=Ggra934.t1|Name=Ggra934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000049_pilon:789251..790081- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCGACTGTAGGCGCAGACAGCCCAGGCTTGCTTGCCCAAAAGGC
CAGTTTTCGGGGTTCGGTTGCACTGTCATATAAAATGAACGGCCTGCTTT
CACTCTCCTACGAAGGCTGTTCGAGAAAGGTTCCACGTTATCACTGGAGC
AGTACTTCACTTAAGATGCGAAAGATGCCGATGCAAGAACATGTGATTGT
TGCTGGAAACCCAGGCTCTGGGAAATCTTCCATTCTGAACTGCATTATCG
GGAGAGTGATTTTCACATCAGGCGTGTCTCTTGGAAGCGGATTTAGTGCC
CTGGATACGAAGTATTTCAATGGGGTTCGATACTCCGATACGCCTGGGCT
CGATGATGTTGGTATTCGGGAACGGGCCGCTGCCGAAATTTCAAAAGCTT
TCAGACAGGGTGGACGAATCAAGCTCATCTTTGTCTCGACACTTGAGTCT
GGGCGTTTGCGTCCTAACGATTTAGCTACTATGACACACATACTAGCAGC
TATTCGAGAAGTTAATATCGATCCTTCCTATAACTTTTCCATCATTTTCA
ACAAGTGCGAGTCCGAGGTACTCACACTGCTGCAGAACGCAGAGGGAAAA
GCAAGGCTGGAGGTTCCTCTTCTGGCTAGAGCGCCAGCTGGTAAGATTTC
GTATATGCCGTATGTCCGTGAAGCAGCTGGACAAACGAATTTTCTTGTAA
CAAGAAATGCAAGTGTTTATCAGGATTTTATAAGCACAGCGCCCATGTTT
GAGCTTCCGAGGAACGATGAATTCAGTGTGGATGCAAAGGGCTACGACGA
AACCGTTGAGAGCCTGAGGGGCGTTCTATAA
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protein sequence of Ggra934.t1

>Ggra934.t1 ID=Ggra934.t1|Name=Ggra934.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MDSTVGADSPGLLAQKASFRGSVALSYKMNGLLSLSYEGCSRKVPRYHWS
STSLKMRKMPMQEHVIVAGNPGSGKSSILNCIIGRVIFTSGVSLGSGFSA
LDTKYFNGVRYSDTPGLDDVGIRERAAAEISKAFRQGGRIKLIFVSTLES
GRLRPNDLATMTHILAAIREVNIDPSYNFSIIFNKCESEVLTLLQNAEGK
ARLEVPLLARAPAGKISYMPYVREAAGQTNFLVTRNASVYQDFISTAPMF
ELPRNDEFSVDAKGYDETVESLRGVL*
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mRNA from alignment at tig00000049_pilon:789251..790081-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra934.t1 ID=Ggra934.t1|Name=Ggra934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000049_pilon:789251..790081- (Gracilaria gracilis GNS1m male)
ATGGATTCGACTGTAGGCGCAGACAGCCCAGGCTTGCTTGCCCAAAAGGC
CAGTTTTCGGGGTTCGGTTGCACTGTCATATAAAATGAACGGCCTGCTTT
CACTCTCCTACGAAGGCTGTTCGAGAAAGGTTCCACGTTATCACTGGAGC
AGTACTTCACTTAAGATGCGAAAGATGCCGATGCAAGAACATGTGATTGT
TGCTGGAAACCCAGGCTCTGGGAAATCTTCCATTCTGAACTGCATTATCG
GGAGAGTGATTTTCACATCAGGCGTGTCTCTTGGAAGCGGATTTAGTGCC
CTGGATACGAAGTATTTCAATGGGGTTCGATACTCCGATACGCCTGGGCT
CGATGATGTTGGTATTCGGGAACGGGCCGCTGCCGAAATTTCAAAAGCTT
TCAGACAGGGTGGACGAATCAAGCTCATCTTTGTCTCGACACTTGAGTCT
GGGCGTTTGCGTCCTAACGATTTAGCTACTATGACACACATACTAGCAGC
TATTCGAGAAGTTAATATCGATCCTTCCTATAACTTTTCCATCATTTTCA
ACAAGTGCGAGTCCGAGGTACTCACACTGCTGCAGAACGCAGAGGGAAAA
GCAAGGCTGGAGGTTCCTCTTCTGGCTAGAGCGCCAGCTGGTAAGATTTC
GTATATGCCGTATGTCCGTGAAGCAGCTGGACAAACGAATTTTCTTGTAA
CAAGAAATGCAAGTGTTTATCAGGATTTTATAAGCACAGCGCCCATGTTT
GAGCTTCCGAGGAACGATGAATTCAGTGTGGATGCAAAGGGCTACGACGA
AACCGTTGAGAGCCTGAGGGGCGTTCTATAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:789251..790081-

>Ggra934.t1 ID=Ggra934.t1|Name=Ggra934.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000049_pilon:789251..790081- (Gracilaria gracilis GNS1m male)
ATGGATTCGACTGTAGGCGCAGACAGCCCAGGCTTGCTTGCCCAAAAGGC
CAGTTTTCGGGGTTCGGTTGCACTGTCATATAAAATGAACGGCCTGCTTT
CACTCTCCTACGAAGGCTGTTCGAGAAAGGTTCCACGTTATCACTGGAGC
AGTACTTCACTTAAGATGCGAAAGATGCCGATGCAAGAACATGTGATTGT
TGCTGGAAACCCAGGCTCTGGGAAATCTTCCATTCTGAACTGCATTATCG
GGAGAGTGATTTTCACATCAGGCGTGTCTCTTGGAAGCGGATTTAGTGCC
CTGGATACGAAGTATTTCAATGGGGTTCGATACTCCGATACGCCTGGGCT
CGATGATGTTGGTATTCGGGAACGGGCCGCTGCCGAAATTTCAAAAGCTT
TCAGACAGGGTGGACGAATCAAGCTCATCTTTGTCTCGACACTTGAGTCT
GGGCGTTTGCGTCCTAACGATTTAGCTACTATGACACACATACTAGCAGC
TATTCGAGAAGTTAATATCGATCCTTCCTATAACTTTTCCATCATTTTCA
ACAAGTGCGAGTCCGAGGTACTCACACTGCTGCAGAACGCAGAGGGAAAA
GCAAGGCTGGAGGTTCCTCTTCTGGCTAGAGCGCCAGCTGGTAAGATTTC
GTATATGCCGTATGTCCGTGAAGCAGCTGGACAAACGAATTTTCTTGTAA
CAAGAAATGCAAGTGTTTATCAGGATTTTATAAGCACAGCGCCCATGTTT
GAGCTTCCGAGGAACGATGAATTCAGTGTGGATGCAAAGGGCTACGACGA
AACCGTTGAGAGCCTGAGGGGCGTTCTATAA
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