Ggra930.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra930.t1
Unique Name	Ggra930.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:653186..654712 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra930	Ggra930	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 653186..654712 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra930.t1.start1	Ggra930.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 653186..653188 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra930.t1.CDS1	Ggra930.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 653186..654712 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra930.t1.exon1	Ggra930.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 653186..654712 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra930.t1.stop1	Ggra930.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 654710..654712 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra930.t1	Ggra930.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 653186..654712 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:653186..654712+
coding sequence from alignment at tig00000049_pilon:653186..654712+

mRNA sequence

>Ggra930.t1 ID=Ggra930.t1|Name=Ggra930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp
MLENNLTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRT
VNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISV
YDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSMLCIEENLR
MIRVRNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANV
AYAEFISPRIIVAPGDSGIEGFFAKQPATGFPRVRAAIESDPFKNVARVQ
VIDAMLPVSVSKTGSCIRSRVDLYFCVVPINGMFVIASTELEGSQSRKLR
TVLMEARGKAVAGLKERGRQIRLLASIISDDIVFPWSSNTDLPISAHLAR
KEHIESIARMILIVANEEGVGGMKDLHGIREIKGTQEVQRATVKMNLAIP
CVVVLFAIMILIVVVDVILRLYISLRWQQNVKCSTDACVKVRSSPCIDLS
SQWLRSRIANDLRAWYDFDNITQSDVQFRLIRGEGHEHFTVLPDPTQHKC
SNGLGFIS*

spliced messenger RNA

>Ggra930.t1 ID=Ggra930.t1|Name=Ggra930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000049_pilon:653186..654712+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAGAACAATCTTACGGTAGACCCTTCCATTTGGAACGTCATCAA
GTTCATCATCATCTCCGTCATCGTGACCCCTCTTCTGGAAGCTCTCTATG
ACCGACTCATATGTGCAAAGGCCACATGGGATGCTCTTCGGGGCAGGACG
GTAAACTTGTCAGACTCGCGCCTGGGAATTTTCGCTCTCCATTCCACATA
TTGGGGGCCTCGAAGAAATGTGACCTTCTCCCTGTTTCTTGGATTAATTG
TTTTGGGTGTCCAGCTGCTTTTGGAGTTTTCTTTTTCTTCTATTTCTGTC
TATGACAGCATGAAGAAAGAGGTGTGGCTTCAGCCTAATCATGAAGATCG
CTATGTTCGTCATGAAGCCAATTGGAGTGCCGAAGTCCCTAGAGACCCAA
CCCGATTTCCGGAGATTGTGTCCATGTTATGCATCGAAGAAAATCTCAGA
ATGATTCGAGTACGTAATGGTCATGCTGATGCTCCACAGTCCTACATTCC
AGGATACGAATATCGCACGAACAGAACTTTCACAATCCGCAAACCTTATT
TGGATTACCGTGATAATGTAACAGTGAGGTGCAGCCATCAGGCAAATGTC
GCCTACGCGGAGTTCATCTCCCCTCGCATAATTGTTGCACCCGGAGATTC
TGGAATCGAAGGGTTTTTTGCAAAGCAGCCAGCAACAGGATTTCCGAGAG
TCCGAGCTGCCATAGAGAGCGACCCATTCAAGAATGTCGCGAGAGTGCAA
GTTATTGATGCTATGCTGCCCGTTTCAGTTTCTAAAACCGGTTCCTGCAT
TCGTTCACGAGTTGATTTGTACTTCTGCGTTGTCCCCATCAATGGCATGT
TCGTTATCGCTAGCACGGAACTCGAAGGATCTCAGTCCAGAAAGCTCAGA
ACGGTACTTATGGAAGCTCGAGGGAAAGCAGTAGCCGGCTTGAAAGAAAG
AGGTCGTCAAATACGTCTACTAGCATCCATCATAAGTGATGATATTGTGT
TCCCCTGGTCATCCAATACTGATCTTCCTATTTCAGCTCATCTGGCTCGG
AAGGAACATATCGAGAGCATTGCCAGAATGATTCTTATTGTCGCAAATGA
AGAAGGAGTTGGAGGAATGAAGGATCTTCATGGCATTCGAGAAATCAAGG
GAACACAAGAGGTGCAGAGAGCAACAGTGAAAATGAATTTGGCTATACCC
TGTGTCGTTGTGCTGTTTGCGATCATGATTTTAATTGTGGTCGTAGATGT
GATACTGCGGCTGTACATCTCGTTAAGGTGGCAGCAAAACGTCAAATGTA
GCACCGACGCATGCGTGAAAGTGCGCTCCTCACCTTGTATCGATCTGTCG
TCACAATGGCTTCGAAGTCGGATAGCAAATGATCTGCGAGCGTGGTACGA
TTTTGACAACATCACGCAGTCGGATGTACAATTCAGATTAATCCGAGGTG
AAGGGCATGAGCATTTCACGGTACTGCCAGATCCGACGCAACACAAGTGT
TCGAATGGTTTGGGGTTTATTTCGTGA

protein sequence of Ggra930.t1

>Ggra930.t1 ID=Ggra930.t1|Name=Ggra930.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MLENNLTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRT
VNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISV
YDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSMLCIEENLR
MIRVRNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANV
AYAEFISPRIIVAPGDSGIEGFFAKQPATGFPRVRAAIESDPFKNVARVQ
VIDAMLPVSVSKTGSCIRSRVDLYFCVVPINGMFVIASTELEGSQSRKLR
TVLMEARGKAVAGLKERGRQIRLLASIISDDIVFPWSSNTDLPISAHLAR
KEHIESIARMILIVANEEGVGGMKDLHGIREIKGTQEVQRATVKMNLAIP
CVVVLFAIMILIVVVDVILRLYISLRWQQNVKCSTDACVKVRSSPCIDLS
SQWLRSRIANDLRAWYDFDNITQSDVQFRLIRGEGHEHFTVLPDPTQHKC
SNGLGFIS*

mRNA from alignment at tig00000049_pilon:653186..654712+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra930.t1 ID=Ggra930.t1|Name=Ggra930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000049_pilon:653186..654712+ (Gracilaria gracilis GNS1m male)
ATGTTGGAGAACAATCTTACGGTAGACCCTTCCATTTGGAACGTCATCAA
GTTCATCATCATCTCCGTCATCGTGACCCCTCTTCTGGAAGCTCTCTATG
ACCGACTCATATGTGCAAAGGCCACATGGGATGCTCTTCGGGGCAGGACG
GTAAACTTGTCAGACTCGCGCCTGGGAATTTTCGCTCTCCATTCCACATA
TTGGGGGCCTCGAAGAAATGTGACCTTCTCCCTGTTTCTTGGATTAATTG
TTTTGGGTGTCCAGCTGCTTTTGGAGTTTTCTTTTTCTTCTATTTCTGTC
TATGACAGCATGAAGAAAGAGGTGTGGCTTCAGCCTAATCATGAAGATCG
CTATGTTCGTCATGAAGCCAATTGGAGTGCCGAAGTCCCTAGAGACCCAA
CCCGATTTCCGGAGATTGTGTCCATGTTATGCATCGAAGAAAATCTCAGA
ATGATTCGAGTACGTAATGGTCATGCTGATGCTCCACAGTCCTACATTCC
AGGATACGAATATCGCACGAACAGAACTTTCACAATCCGCAAACCTTATT
TGGATTACCGTGATAATGTAACAGTGAGGTGCAGCCATCAGGCAAATGTC
GCCTACGCGGAGTTCATCTCCCCTCGCATAATTGTTGCACCCGGAGATTC
TGGAATCGAAGGGTTTTTTGCAAAGCAGCCAGCAACAGGATTTCCGAGAG
TCCGAGCTGCCATAGAGAGCGACCCATTCAAGAATGTCGCGAGAGTGCAA
GTTATTGATGCTATGCTGCCCGTTTCAGTTTCTAAAACCGGTTCCTGCAT
TCGTTCACGAGTTGATTTGTACTTCTGCGTTGTCCCCATCAATGGCATGT
TCGTTATCGCTAGCACGGAACTCGAAGGATCTCAGTCCAGAAAGCTCAGA
ACGGTACTTATGGAAGCTCGAGGGAAAGCAGTAGCCGGCTTGAAAGAAAG
AGGTCGTCAAATACGTCTACTAGCATCCATCATAAGTGATGATATTGTGT
TCCCCTGGTCATCCAATACTGATCTTCCTATTTCAGCTCATCTGGCTCGG
AAGGAACATATCGAGAGCATTGCCAGAATGATTCTTATTGTCGCAAATGA
AGAAGGAGTTGGAGGAATGAAGGATCTTCATGGCATTCGAGAAATCAAGG
GAACACAAGAGGTGCAGAGAGCAACAGTGAAAATGAATTTGGCTATACCC
TGTGTCGTTGTGCTGTTTGCGATCATGATTTTAATTGTGGTCGTAGATGT
GATACTGCGGCTGTACATCTCGTTAAGGTGGCAGCAAAACGTCAAATGTA
GCACCGACGCATGCGTGAAAGTGCGCTCCTCACCTTGTATCGATCTGTCG
TCACAATGGCTTCGAAGTCGGATAGCAAATGATCTGCGAGCGTGGTACGA
TTTTGACAACATCACGCAGTCGGATGTACAATTCAGATTAATCCGAGGTG
AAGGGCATGAGCATTTCACGGTACTGCCAGATCCGACGCAACACAAGTGT
TCGAATGGTTTGGGGTTTATTTCGTGA

Coding sequence (CDS) from alignment at tig00000049_pilon:653186..654712+

>Ggra930.t1 ID=Ggra930.t1|Name=Ggra930.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000049_pilon:653186..654712+ (Gracilaria gracilis GNS1m male)
ATGTTGGAGAACAATCTTACGGTAGACCCTTCCATTTGGAACGTCATCAA
GTTCATCATCATCTCCGTCATCGTGACCCCTCTTCTGGAAGCTCTCTATG
ACCGACTCATATGTGCAAAGGCCACATGGGATGCTCTTCGGGGCAGGACG
GTAAACTTGTCAGACTCGCGCCTGGGAATTTTCGCTCTCCATTCCACATA
TTGGGGGCCTCGAAGAAATGTGACCTTCTCCCTGTTTCTTGGATTAATTG
TTTTGGGTGTCCAGCTGCTTTTGGAGTTTTCTTTTTCTTCTATTTCTGTC
TATGACAGCATGAAGAAAGAGGTGTGGCTTCAGCCTAATCATGAAGATCG
CTATGTTCGTCATGAAGCCAATTGGAGTGCCGAAGTCCCTAGAGACCCAA
CCCGATTTCCGGAGATTGTGTCCATGTTATGCATCGAAGAAAATCTCAGA
ATGATTCGAGTACGTAATGGTCATGCTGATGCTCCACAGTCCTACATTCC
AGGATACGAATATCGCACGAACAGAACTTTCACAATCCGCAAACCTTATT
TGGATTACCGTGATAATGTAACAGTGAGGTGCAGCCATCAGGCAAATGTC
GCCTACGCGGAGTTCATCTCCCCTCGCATAATTGTTGCACCCGGAGATTC
TGGAATCGAAGGGTTTTTTGCAAAGCAGCCAGCAACAGGATTTCCGAGAG
TCCGAGCTGCCATAGAGAGCGACCCATTCAAGAATGTCGCGAGAGTGCAA
GTTATTGATGCTATGCTGCCCGTTTCAGTTTCTAAAACCGGTTCCTGCAT
TCGTTCACGAGTTGATTTGTACTTCTGCGTTGTCCCCATCAATGGCATGT
TCGTTATCGCTAGCACGGAACTCGAAGGATCTCAGTCCAGAAAGCTCAGA
ACGGTACTTATGGAAGCTCGAGGGAAAGCAGTAGCCGGCTTGAAAGAAAG
AGGTCGTCAAATACGTCTACTAGCATCCATCATAAGTGATGATATTGTGT
TCCCCTGGTCATCCAATACTGATCTTCCTATTTCAGCTCATCTGGCTCGG
AAGGAACATATCGAGAGCATTGCCAGAATGATTCTTATTGTCGCAAATGA
AGAAGGAGTTGGAGGAATGAAGGATCTTCATGGCATTCGAGAAATCAAGG
GAACACAAGAGGTGCAGAGAGCAACAGTGAAAATGAATTTGGCTATACCC
TGTGTCGTTGTGCTGTTTGCGATCATGATTTTAATTGTGGTCGTAGATGT
GATACTGCGGCTGTACATCTCGTTAAGGTGGCAGCAAAACGTCAAATGTA
GCACCGACGCATGCGTGAAAGTGCGCTCCTCACCTTGTATCGATCTGTCG
TCACAATGGCTTCGAAGTCGGATAGCAAATGATCTGCGAGCGTGGTACGA
TTTTGACAACATCACGCAGTCGGATGTACAATTCAGATTAATCCGAGGTG
AAGGGCATGAGCATTTCACGGTACTGCCAGATCCGACGCAACACAAGTGT
TCGAATGGTTTGGGGTTTATTTCGTGA