Ggra938.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra938.t1
Unique NameGgra938.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length601
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:810483..812285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1117318.PRUB_07255
Preferred nameipdC
PFAMsTPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00027,RC00375,RC00506,RC02744
KEGG koko:K01568,ko:K04103
KEGG ReactionR00014,R00755,R01974
KEGG Pathwayko00010,ko00380,ko01100,ko01110,ko01130,map00010,map00380,map01100,map01110,map01130
Evalue4.29e-186
EggNOG OGsCOG3961@1|root,COG3961@2|Bacteria,1MW2F@1224|Proteobacteria,1RQFY@1236|Gammaproteobacteria
EC4.1.1.1,4.1.1.74
DescriptionBelongs to the TPP enzyme family
COG categoryGH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra938Ggra938Gracilaria gracilis GNS1m malegenetig00000049_pilon 810483..812285 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra938.t1.stop1Ggra938.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 810483..810485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra938.t1.CDS1Ggra938.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 810483..812285 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra938.t1.exon1Ggra938.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 810483..812285 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra938.t1.start1Ggra938.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 812283..812285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra938.t1Ggra938.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 810483..812285 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra938.t1 ID=Ggra938.t1|Name=Ggra938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=601bp
MSPYCTIASYLEKRLEQLKLGRMFGVAGNYVAPFLNSILENELSSITISG
SANEMCAGFAADGYARFNGIGAVFVTYGVGSFSVLNTIAGAYAEQVPIIL
INGAPTTKQDSLETHEGILSAHSTSHRLVDIQMYRPITVAAERITNGVQG
AFQIDSVLTALVTTKKPVYLEVVENVWRVRCPFPKGSIVSGASALMTVSE
AQGAVQETMSLLRRARKAVFWAGPEINRYGLQERLVSLLDACNNATCNVS
EVIGYVTSPSSKAVLSEDNKFYQGTLWLSNDEIEDLVGDDGVLIALGTWL
TGIENGNESIFSEGRVFVTNNYARVASRYFPAVDLGAYIERLTNELKCFS
NEDSGELSKLPLQAVKPGILYPEYPAAENTDGITFNQFFSCLSPWLTDND
IVVADVGFSLTGAFHLHIPSQDGFVAQASWLSIGHSIAAATGVKCARPGK
RVIVIVGDGAFQQNCQAVSDQIALGHNTVVFIMANRLYGVEQYVVNPNPF
RKPRKSYKKELLNNFYRYNVLPSWEFSNIPATFGGGVGLKASTSSELINC
LEKIRMDEDSNFVVEVIVPKQDCPSALDTSMARVGDDETESPSWPPAGIF
*
back to top

spliced messenger RNA

>Ggra938.t1 ID=Ggra938.t1|Name=Ggra938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000049_pilon:810483..812285- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCTTACTGCACAATTGCAAGCTATCTCGAGAAACGCCTGGAGCA
GCTGAAGCTGGGCCGCATGTTTGGGGTTGCAGGGAACTATGTAGCCCCGT
TCCTCAATTCCATTTTGGAGAATGAACTCTCATCGATAACAATTTCAGGA
AGCGCCAACGAAATGTGTGCTGGATTTGCAGCTGATGGTTACGCCCGATT
CAATGGAATAGGAGCCGTGTTCGTCACGTATGGTGTTGGTTCGTTTTCCG
TTCTCAACACCATAGCTGGTGCTTACGCGGAACAAGTTCCTATCATTCTC
ATCAATGGAGCTCCGACTACTAAACAAGATAGCCTTGAGACGCATGAAGG
GATTTTAAGTGCACATTCAACCTCGCATAGACTTGTCGACATTCAAATGT
ATCGCCCCATTACTGTTGCGGCCGAGCGAATCACAAATGGAGTCCAAGGT
GCATTTCAAATTGACTCTGTCCTCACCGCACTAGTGACTACGAAGAAGCC
TGTGTATCTGGAAGTTGTAGAAAACGTTTGGCGCGTTAGATGTCCCTTTC
CGAAGGGAAGCATAGTCTCTGGTGCCTCTGCACTCATGACAGTCAGCGAA
GCACAAGGTGCAGTTCAGGAAACTATGAGTTTGTTGCGAAGAGCCAGGAA
GGCTGTCTTTTGGGCTGGCCCAGAAATTAATCGATATGGTCTCCAAGAAC
GACTTGTTTCTCTTCTTGACGCGTGTAACAACGCTACATGCAACGTGAGC
GAGGTAATTGGTTACGTAACATCCCCATCCAGCAAGGCTGTGCTTTCAGA
AGACAACAAGTTTTATCAAGGCACTTTGTGGTTGAGCAACGACGAGATTG
AAGACCTTGTTGGGGACGATGGTGTACTAATCGCTCTTGGAACTTGGTTG
ACTGGAATTGAGAACGGAAATGAATCGATTTTTTCTGAGGGAAGGGTGTT
TGTAACAAACAATTATGCTCGCGTGGCGTCCCGGTACTTTCCTGCGGTTG
ATCTTGGAGCATACATTGAAAGACTGACAAACGAACTTAAGTGCTTCTCT
AACGAAGATTCTGGAGAGCTATCCAAACTTCCGCTTCAAGCAGTTAAACC
TGGAATACTGTACCCAGAGTATCCAGCAGCGGAAAACACGGATGGAATCA
CCTTTAACCAGTTCTTCTCATGCTTATCGCCGTGGCTCACCGACAATGAC
ATAGTCGTGGCCGATGTGGGCTTTTCGCTCACTGGAGCATTTCATCTCCA
CATTCCGAGTCAAGACGGCTTCGTTGCGCAAGCTTCATGGCTTTCCATTG
GCCACTCTATTGCTGCGGCGACGGGAGTCAAATGTGCTCGACCAGGGAAA
CGTGTGATTGTTATTGTCGGAGACGGTGCCTTCCAACAGAATTGTCAAGC
TGTTTCTGACCAAATTGCACTTGGGCATAACACGGTAGTTTTCATAATGG
CGAATCGATTGTACGGTGTTGAGCAGTATGTCGTTAATCCCAACCCCTTT
CGAAAACCCCGGAAATCATACAAGAAGGAACTACTCAACAATTTCTACAG
ATATAACGTCCTTCCCTCCTGGGAGTTTAGCAACATTCCTGCAACTTTTG
GAGGGGGTGTAGGATTGAAAGCTTCAACTTCCTCTGAGTTGATCAACTGC
TTGGAAAAAATTAGGATGGATGAAGATTCGAATTTCGTCGTGGAGGTGAT
TGTGCCAAAACAAGACTGTCCGTCCGCACTGGACACTAGCATGGCCCGCG
TAGGAGATGACGAGACAGAAAGCCCAAGTTGGCCACCTGCAGGCATTTTC
TAG
back to top

protein sequence of Ggra938.t1

>Ggra938.t1 ID=Ggra938.t1|Name=Ggra938.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=601bp
MSPYCTIASYLEKRLEQLKLGRMFGVAGNYVAPFLNSILENELSSITISG
SANEMCAGFAADGYARFNGIGAVFVTYGVGSFSVLNTIAGAYAEQVPIIL
INGAPTTKQDSLETHEGILSAHSTSHRLVDIQMYRPITVAAERITNGVQG
AFQIDSVLTALVTTKKPVYLEVVENVWRVRCPFPKGSIVSGASALMTVSE
AQGAVQETMSLLRRARKAVFWAGPEINRYGLQERLVSLLDACNNATCNVS
EVIGYVTSPSSKAVLSEDNKFYQGTLWLSNDEIEDLVGDDGVLIALGTWL
TGIENGNESIFSEGRVFVTNNYARVASRYFPAVDLGAYIERLTNELKCFS
NEDSGELSKLPLQAVKPGILYPEYPAAENTDGITFNQFFSCLSPWLTDND
IVVADVGFSLTGAFHLHIPSQDGFVAQASWLSIGHSIAAATGVKCARPGK
RVIVIVGDGAFQQNCQAVSDQIALGHNTVVFIMANRLYGVEQYVVNPNPF
RKPRKSYKKELLNNFYRYNVLPSWEFSNIPATFGGGVGLKASTSSELINC
LEKIRMDEDSNFVVEVIVPKQDCPSALDTSMARVGDDETESPSWPPAGIF
*
back to top

mRNA from alignment at tig00000049_pilon:810483..812285-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra938.t1 ID=Ggra938.t1|Name=Ggra938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000049_pilon:810483..812285- (Gracilaria gracilis GNS1m male)
ATGTCACCTTACTGCACAATTGCAAGCTATCTCGAGAAACGCCTGGAGCA
GCTGAAGCTGGGCCGCATGTTTGGGGTTGCAGGGAACTATGTAGCCCCGT
TCCTCAATTCCATTTTGGAGAATGAACTCTCATCGATAACAATTTCAGGA
AGCGCCAACGAAATGTGTGCTGGATTTGCAGCTGATGGTTACGCCCGATT
CAATGGAATAGGAGCCGTGTTCGTCACGTATGGTGTTGGTTCGTTTTCCG
TTCTCAACACCATAGCTGGTGCTTACGCGGAACAAGTTCCTATCATTCTC
ATCAATGGAGCTCCGACTACTAAACAAGATAGCCTTGAGACGCATGAAGG
GATTTTAAGTGCACATTCAACCTCGCATAGACTTGTCGACATTCAAATGT
ATCGCCCCATTACTGTTGCGGCCGAGCGAATCACAAATGGAGTCCAAGGT
GCATTTCAAATTGACTCTGTCCTCACCGCACTAGTGACTACGAAGAAGCC
TGTGTATCTGGAAGTTGTAGAAAACGTTTGGCGCGTTAGATGTCCCTTTC
CGAAGGGAAGCATAGTCTCTGGTGCCTCTGCACTCATGACAGTCAGCGAA
GCACAAGGTGCAGTTCAGGAAACTATGAGTTTGTTGCGAAGAGCCAGGAA
GGCTGTCTTTTGGGCTGGCCCAGAAATTAATCGATATGGTCTCCAAGAAC
GACTTGTTTCTCTTCTTGACGCGTGTAACAACGCTACATGCAACGTGAGC
GAGGTAATTGGTTACGTAACATCCCCATCCAGCAAGGCTGTGCTTTCAGA
AGACAACAAGTTTTATCAAGGCACTTTGTGGTTGAGCAACGACGAGATTG
AAGACCTTGTTGGGGACGATGGTGTACTAATCGCTCTTGGAACTTGGTTG
ACTGGAATTGAGAACGGAAATGAATCGATTTTTTCTGAGGGAAGGGTGTT
TGTAACAAACAATTATGCTCGCGTGGCGTCCCGGTACTTTCCTGCGGTTG
ATCTTGGAGCATACATTGAAAGACTGACAAACGAACTTAAGTGCTTCTCT
AACGAAGATTCTGGAGAGCTATCCAAACTTCCGCTTCAAGCAGTTAAACC
TGGAATACTGTACCCAGAGTATCCAGCAGCGGAAAACACGGATGGAATCA
CCTTTAACCAGTTCTTCTCATGCTTATCGCCGTGGCTCACCGACAATGAC
ATAGTCGTGGCCGATGTGGGCTTTTCGCTCACTGGAGCATTTCATCTCCA
CATTCCGAGTCAAGACGGCTTCGTTGCGCAAGCTTCATGGCTTTCCATTG
GCCACTCTATTGCTGCGGCGACGGGAGTCAAATGTGCTCGACCAGGGAAA
CGTGTGATTGTTATTGTCGGAGACGGTGCCTTCCAACAGAATTGTCAAGC
TGTTTCTGACCAAATTGCACTTGGGCATAACACGGTAGTTTTCATAATGG
CGAATCGATTGTACGGTGTTGAGCAGTATGTCGTTAATCCCAACCCCTTT
CGAAAACCCCGGAAATCATACAAGAAGGAACTACTCAACAATTTCTACAG
ATATAACGTCCTTCCCTCCTGGGAGTTTAGCAACATTCCTGCAACTTTTG
GAGGGGGTGTAGGATTGAAAGCTTCAACTTCCTCTGAGTTGATCAACTGC
TTGGAAAAAATTAGGATGGATGAAGATTCGAATTTCGTCGTGGAGGTGAT
TGTGCCAAAACAAGACTGTCCGTCCGCACTGGACACTAGCATGGCCCGCG
TAGGAGATGACGAGACAGAAAGCCCAAGTTGGCCACCTGCAGGCATTTTC
TAG
back to top

Coding sequence (CDS) from alignment at tig00000049_pilon:810483..812285-

>Ggra938.t1 ID=Ggra938.t1|Name=Ggra938.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1803bp|location=Sequence derived from alignment at tig00000049_pilon:810483..812285- (Gracilaria gracilis GNS1m male)
ATGTCACCTTACTGCACAATTGCAAGCTATCTCGAGAAACGCCTGGAGCA
GCTGAAGCTGGGCCGCATGTTTGGGGTTGCAGGGAACTATGTAGCCCCGT
TCCTCAATTCCATTTTGGAGAATGAACTCTCATCGATAACAATTTCAGGA
AGCGCCAACGAAATGTGTGCTGGATTTGCAGCTGATGGTTACGCCCGATT
CAATGGAATAGGAGCCGTGTTCGTCACGTATGGTGTTGGTTCGTTTTCCG
TTCTCAACACCATAGCTGGTGCTTACGCGGAACAAGTTCCTATCATTCTC
ATCAATGGAGCTCCGACTACTAAACAAGATAGCCTTGAGACGCATGAAGG
GATTTTAAGTGCACATTCAACCTCGCATAGACTTGTCGACATTCAAATGT
ATCGCCCCATTACTGTTGCGGCCGAGCGAATCACAAATGGAGTCCAAGGT
GCATTTCAAATTGACTCTGTCCTCACCGCACTAGTGACTACGAAGAAGCC
TGTGTATCTGGAAGTTGTAGAAAACGTTTGGCGCGTTAGATGTCCCTTTC
CGAAGGGAAGCATAGTCTCTGGTGCCTCTGCACTCATGACAGTCAGCGAA
GCACAAGGTGCAGTTCAGGAAACTATGAGTTTGTTGCGAAGAGCCAGGAA
GGCTGTCTTTTGGGCTGGCCCAGAAATTAATCGATATGGTCTCCAAGAAC
GACTTGTTTCTCTTCTTGACGCGTGTAACAACGCTACATGCAACGTGAGC
GAGGTAATTGGTTACGTAACATCCCCATCCAGCAAGGCTGTGCTTTCAGA
AGACAACAAGTTTTATCAAGGCACTTTGTGGTTGAGCAACGACGAGATTG
AAGACCTTGTTGGGGACGATGGTGTACTAATCGCTCTTGGAACTTGGTTG
ACTGGAATTGAGAACGGAAATGAATCGATTTTTTCTGAGGGAAGGGTGTT
TGTAACAAACAATTATGCTCGCGTGGCGTCCCGGTACTTTCCTGCGGTTG
ATCTTGGAGCATACATTGAAAGACTGACAAACGAACTTAAGTGCTTCTCT
AACGAAGATTCTGGAGAGCTATCCAAACTTCCGCTTCAAGCAGTTAAACC
TGGAATACTGTACCCAGAGTATCCAGCAGCGGAAAACACGGATGGAATCA
CCTTTAACCAGTTCTTCTCATGCTTATCGCCGTGGCTCACCGACAATGAC
ATAGTCGTGGCCGATGTGGGCTTTTCGCTCACTGGAGCATTTCATCTCCA
CATTCCGAGTCAAGACGGCTTCGTTGCGCAAGCTTCATGGCTTTCCATTG
GCCACTCTATTGCTGCGGCGACGGGAGTCAAATGTGCTCGACCAGGGAAA
CGTGTGATTGTTATTGTCGGAGACGGTGCCTTCCAACAGAATTGTCAAGC
TGTTTCTGACCAAATTGCACTTGGGCATAACACGGTAGTTTTCATAATGG
CGAATCGATTGTACGGTGTTGAGCAGTATGTCGTTAATCCCAACCCCTTT
CGAAAACCCCGGAAATCATACAAGAAGGAACTACTCAACAATTTCTACAG
ATATAACGTCCTTCCCTCCTGGGAGTTTAGCAACATTCCTGCAACTTTTG
GAGGGGGTGTAGGATTGAAAGCTTCAACTTCCTCTGAGTTGATCAACTGC
TTGGAAAAAATTAGGATGGATGAAGATTCGAATTTCGTCGTGGAGGTGAT
TGTGCCAAAACAAGACTGTCCGTCCGCACTGGACACTAGCATGGCCCGCG
TAGGAGATGACGAGACAGAAAGCCCAAGTTGGCCACCTGCAGGCATTTTC
TAG
back to top