Ggra931.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra931.t1
Unique NameGgra931.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:752546..753646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000025374
PFAMsAIG1,MMR_HSR1
Max annot lvl121069|Pythiales
Evalue5.02e-31
EggNOG OGs28ND8@1|root,2QUYQ@2759|Eukaryota,1MI42@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra931Ggra931Gracilaria gracilis GNS1m malegenetig00000049_pilon 752546..753646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra931.t1.stop1Ggra931.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 752546..752548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra931.t1.CDS1Ggra931.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 752546..753646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra931.t1.exon1Ggra931.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 752546..753646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra931.t1.start1Ggra931.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 753644..753646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra931.t1Ggra931.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 752546..753646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra931.t1 ID=Ggra931.t1|Name=Ggra931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MRKFSASHANVISLNEAISETRGVFDETTRFRVGAMDSTVGADSPGLLAQ
KASFRGSVALSYKMNDLLSLSYEGCSRKVPRYHWSSTSLKMRKMPMQEHV
IVAGNPGSGKSSILNCIIGKVIFTSGVSLGSGLTSALDTKYFNGVRYSDT
PGLDDVGIRERAAAEISKAFRQGGRIKLIFVSTLESGRLRPNDLATMTHI
LAAIREVNIDPSYNFSIIFNKCESEVLTLLQNADGKARLEVPLLARAPAG
KISYMPYVREAAGQTNFLVTRNASVYQDFISTAPMFELPRNDEFSVDAKG
YDETVESLRKIVEDLKIQLEKALETPRPKREGGKFRQFARRFKRTVGDIL
DDVFETANDFGRSILQ*
back to top

spliced messenger RNA

>Ggra931.t1 ID=Ggra931.t1|Name=Ggra931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000049_pilon:752546..753646- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAAGTTTAGTGCCTCTCACGCAAATGTTATAAGCCTCAATGAGGC
AATCTCCGAGACGAGGGGCGTATTCGACGAGACCACACGATTTCGTGTGG
GCGCGATGGATTCGACTGTAGGCGCAGACAGCCCAGGCTTGCTTGCCCAA
AAGGCCAGTTTTCGGGGTTCGGTTGCACTGTCATATAAAATGAACGACCT
GCTTTCACTCTCCTACGAAGGCTGTTCGAGAAAGGTTCCACGTTATCACT
GGAGCAGTACTTCACTTAAGATGCGAAAGATGCCGATGCAAGAACATGTG
ATTGTTGCTGGAAACCCAGGCTCTGGGAAATCTTCCATTCTGAACTGCAT
TATCGGGAAAGTGATTTTCACATCAGGCGTGTCTCTTGGAAGCGGATTAA
CTAGTGCCCTGGATACGAAGTATTTCAATGGGGTTCGATACTCCGATACG
CCTGGGCTCGATGATGTTGGTATTCGGGAACGGGCCGCTGCCGAAATTTC
AAAAGCTTTCAGACAGGGTGGACGAATCAAGCTCATCTTTGTCTCGACAC
TTGAGTCTGGGCGTTTGCGTCCTAACGATTTAGCTACTATGACACACATA
CTAGCAGCTATTCGAGAAGTTAATATCGATCCTTCCTATAACTTTTCCAT
CATTTTCAACAAGTGCGAGTCCGAGGTACTCACACTGCTGCAGAACGCAG
ACGGAAAAGCAAGGCTGGAGGTTCCTCTTCTGGCTAGAGCGCCAGCTGGT
AAGATTTCGTATATGCCGTATGTCCGTGAAGCAGCTGGACAAACGAATTT
TCTTGTAACAAGAAATGCAAGTGTTTATCAGGATTTTATAAGCACAGCGC
CAATGTTTGAGCTTCCGAGGAACGATGAATTCAGTGTGGATGCAAAGGGC
TACGACGAAACCGTTGAGAGCCTGAGAAAGATAGTGGAGGACCTCAAGAT
CCAGCTGGAGAAAGCGTTGGAGACGCCACGACCGAAGCGGGAAGGAGGAA
AGTTTCGCCAATTTGCGAGAAGATTTAAACGAACGGTTGGCGACATACTT
GATGACGTGTTTGAGACGGCTAATGACTTTGGAAGGTCTATTTTGCAATA
G
back to top

protein sequence of Ggra931.t1

>Ggra931.t1 ID=Ggra931.t1|Name=Ggra931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MRKFSASHANVISLNEAISETRGVFDETTRFRVGAMDSTVGADSPGLLAQ
KASFRGSVALSYKMNDLLSLSYEGCSRKVPRYHWSSTSLKMRKMPMQEHV
IVAGNPGSGKSSILNCIIGKVIFTSGVSLGSGLTSALDTKYFNGVRYSDT
PGLDDVGIRERAAAEISKAFRQGGRIKLIFVSTLESGRLRPNDLATMTHI
LAAIREVNIDPSYNFSIIFNKCESEVLTLLQNADGKARLEVPLLARAPAG
KISYMPYVREAAGQTNFLVTRNASVYQDFISTAPMFELPRNDEFSVDAKG
YDETVESLRKIVEDLKIQLEKALETPRPKREGGKFRQFARRFKRTVGDIL
DDVFETANDFGRSILQ*
back to top

mRNA from alignment at tig00000049_pilon:752546..753646-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra931.t1 ID=Ggra931.t1|Name=Ggra931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000049_pilon:752546..753646- (Gracilaria gracilis GNS1m male)
ATGCGTAAGTTTAGTGCCTCTCACGCAAATGTTATAAGCCTCAATGAGGC
AATCTCCGAGACGAGGGGCGTATTCGACGAGACCACACGATTTCGTGTGG
GCGCGATGGATTCGACTGTAGGCGCAGACAGCCCAGGCTTGCTTGCCCAA
AAGGCCAGTTTTCGGGGTTCGGTTGCACTGTCATATAAAATGAACGACCT
GCTTTCACTCTCCTACGAAGGCTGTTCGAGAAAGGTTCCACGTTATCACT
GGAGCAGTACTTCACTTAAGATGCGAAAGATGCCGATGCAAGAACATGTG
ATTGTTGCTGGAAACCCAGGCTCTGGGAAATCTTCCATTCTGAACTGCAT
TATCGGGAAAGTGATTTTCACATCAGGCGTGTCTCTTGGAAGCGGATTAA
CTAGTGCCCTGGATACGAAGTATTTCAATGGGGTTCGATACTCCGATACG
CCTGGGCTCGATGATGTTGGTATTCGGGAACGGGCCGCTGCCGAAATTTC
AAAAGCTTTCAGACAGGGTGGACGAATCAAGCTCATCTTTGTCTCGACAC
TTGAGTCTGGGCGTTTGCGTCCTAACGATTTAGCTACTATGACACACATA
CTAGCAGCTATTCGAGAAGTTAATATCGATCCTTCCTATAACTTTTCCAT
CATTTTCAACAAGTGCGAGTCCGAGGTACTCACACTGCTGCAGAACGCAG
ACGGAAAAGCAAGGCTGGAGGTTCCTCTTCTGGCTAGAGCGCCAGCTGGT
AAGATTTCGTATATGCCGTATGTCCGTGAAGCAGCTGGACAAACGAATTT
TCTTGTAACAAGAAATGCAAGTGTTTATCAGGATTTTATAAGCACAGCGC
CAATGTTTGAGCTTCCGAGGAACGATGAATTCAGTGTGGATGCAAAGGGC
TACGACGAAACCGTTGAGAGCCTGAGAAAGATAGTGGAGGACCTCAAGAT
CCAGCTGGAGAAAGCGTTGGAGACGCCACGACCGAAGCGGGAAGGAGGAA
AGTTTCGCCAATTTGCGAGAAGATTTAAACGAACGGTTGGCGACATACTT
GATGACGTGTTTGAGACGGCTAATGACTTTGGAAGGTCTATTTTGCAATA
G
back to top

Coding sequence (CDS) from alignment at tig00000049_pilon:752546..753646-

>Ggra931.t1 ID=Ggra931.t1|Name=Ggra931.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000049_pilon:752546..753646- (Gracilaria gracilis GNS1m male)
ATGCGTAAGTTTAGTGCCTCTCACGCAAATGTTATAAGCCTCAATGAGGC
AATCTCCGAGACGAGGGGCGTATTCGACGAGACCACACGATTTCGTGTGG
GCGCGATGGATTCGACTGTAGGCGCAGACAGCCCAGGCTTGCTTGCCCAA
AAGGCCAGTTTTCGGGGTTCGGTTGCACTGTCATATAAAATGAACGACCT
GCTTTCACTCTCCTACGAAGGCTGTTCGAGAAAGGTTCCACGTTATCACT
GGAGCAGTACTTCACTTAAGATGCGAAAGATGCCGATGCAAGAACATGTG
ATTGTTGCTGGAAACCCAGGCTCTGGGAAATCTTCCATTCTGAACTGCAT
TATCGGGAAAGTGATTTTCACATCAGGCGTGTCTCTTGGAAGCGGATTAA
CTAGTGCCCTGGATACGAAGTATTTCAATGGGGTTCGATACTCCGATACG
CCTGGGCTCGATGATGTTGGTATTCGGGAACGGGCCGCTGCCGAAATTTC
AAAAGCTTTCAGACAGGGTGGACGAATCAAGCTCATCTTTGTCTCGACAC
TTGAGTCTGGGCGTTTGCGTCCTAACGATTTAGCTACTATGACACACATA
CTAGCAGCTATTCGAGAAGTTAATATCGATCCTTCCTATAACTTTTCCAT
CATTTTCAACAAGTGCGAGTCCGAGGTACTCACACTGCTGCAGAACGCAG
ACGGAAAAGCAAGGCTGGAGGTTCCTCTTCTGGCTAGAGCGCCAGCTGGT
AAGATTTCGTATATGCCGTATGTCCGTGAAGCAGCTGGACAAACGAATTT
TCTTGTAACAAGAAATGCAAGTGTTTATCAGGATTTTATAAGCACAGCGC
CAATGTTTGAGCTTCCGAGGAACGATGAATTCAGTGTGGATGCAAAGGGC
TACGACGAAACCGTTGAGAGCCTGAGAAAGATAGTGGAGGACCTCAAGAT
CCAGCTGGAGAAAGCGTTGGAGACGCCACGACCGAAGCGGGAAGGAGGAA
AGTTTCGCCAATTTGCGAGAAGATTTAAACGAACGGTTGGCGACATACTT
GATGACGTGTTTGAGACGGCTAATGACTTTGGAAGGTCTATTTTGCAATA
G
back to top