Ggra953.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra953.t1
Unique NameGgra953.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Homology
BLAST of Ggra953.t1 vs. uniprot
Match: A0A2V3IR41 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR41_9FLOR)

HSP 1 Score: 249 bits (635), Expect = 4.170e-82
Identity = 130/172 (75.58%), Postives = 150/172 (87.21%), Query Frame = 0
Query:    1 MHIRSVFVILALCFVLQATDAEAHCRRRKSRRLVIINPPTLQDPVPFGYSQIIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQVDVAVSESFVWRLVC 172
            MHIRSVF++LAL FVLQA DA+A+C RR+ RRLV INPPTL DPVPFGYSQI+VDTRNAVAHVAGQ   N+TGS+VGETF EQL+Q LRN++LAL+AVEAD++D+LKS +I VDLDP+TAE ILAAS + N+  P PPG VFS+DSLLEPGVLVEIQVDVAV ESFV RLVC
Sbjct:    1 MHIRSVFILLALLFVLQAADADAYCWRRQRRRLVRINPPTLLDPVPFGYSQIVVDTRNAVAHVAGQNAINQTGSLVGETFAEQLEQTLRNVELALEAVEADINDILKSILITVDLDPSTAEDILAAS-LMNAGGPAPPGIVFSSDSLLEPGVLVEIQVDVAVPESFVRRLVC 171          
BLAST of Ggra953.t1 vs. uniprot
Match: A0A2V3J4H8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H8_9FLOR)

HSP 1 Score: 149 bits (376), Expect = 8.550e-43
Identity = 80/169 (47.34%), Postives = 110/169 (65.09%), Query Frame = 0
Query:    4 RSVFVILALCFVLQATDAEAHCRRRKSRRLVIINPPTLQDPVPFGYSQIIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQVDVAVSESFVWRLVC 172
            R+ F+ LAL F    T A   C R  ++R+ IINPPTL DPVPFG+S I VDT+N VAHVAGQ   N+TG+I+G+T  EQL +  RN+  ALDAVEAD+SD+ +    +++ DP T    L+   ++   + +P  T+ S  +L   G+LVEI++D  VS SFV RL+C
Sbjct:    3 RAAFLFLALIFCFHTTQATWFCLRTNNKRVRIINPPTLFDPVPFGFSHIAVDTKNFVAHVAGQVAINQTGAIIGDTLAEQLVETERNLLFALDAVEADISDITRVNAFILNFDPRTD---LSTFMMTGKRLGSPVTTLISTGALAIEGLLVEIELDAVVSRSFVRRLIC 168          
BLAST of Ggra953.t1 vs. uniprot
Match: A0A316ESS3 (Enamine deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax=Cupriavidus plantarum TaxID=942865 RepID=A0A316ESS3_9BURK)

HSP 1 Score: 76.3 bits (186), Expect = 1.490e-14
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 0
Query:   36 INPPTLQDPVPFGYSQIIVD-TRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQ 157
            INPP L DP P GYS ++V  T   + H+AGQG  + +G++  + F  Q+ Q LRN++ AL A EAD++D++K TV++VD   +      AA      + P P  T+     L   G+L EI+
Sbjct:   15 INPPELYDPRPNGYSHVVVTHTPARIVHIAGQGGEDASGALPPD-FASQVDQALRNLRHALQAAEADIADVVKITVLIVDHSMDRLRTFSAAWQALLGDWPAPACTLIPVPRLALDGMLFEIE 136          
BLAST of Ggra953.t1 vs. uniprot
Match: RidA family protein n=1 Tax=Cupriavidus pampae TaxID=659251 RepID=UPI001CAF501F (RidA family protein n=1 Tax=Cupriavidus pampae TaxID=659251 RepID=UPI001CAF501F)

HSP 1 Score: 73.2 bits (178), Expect = 2.270e-13
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 0
Query:   36 INPPTLQDPVPFGYSQIIV-DTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQ 157
            INPP L DP P GYS ++V  T   + H AGQG  + TG++  + F  Q+ Q LRN++ AL A +AD++D++K TV+VVD           A      + P P  T+     L   G+L E++
Sbjct:   15 INPPELYDPRPNGYSHVVVAHTPARIVHAAGQGGEDATGALAPD-FAAQVDQALRNLRHALQAADADIADVVKITVLVVDHSMERLRIFTEAWQALLGDWPAPACTLIPVPRLALDGMLFEVE 136          
BLAST of Ggra953.t1 vs. uniprot
Match: A0A7V9T0R6 (RidA family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9T0R6_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 2.460e-13
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 0
Query:   36 INPPTLQDPVPFGYSQIIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGIL-AASGISNSEVPTPPGTVFSADSLLEPGVLVEIQ 157
            I+P +L  P   GYSQ  V     + HVAGQ      G++VG     QL+Q LRN+KLAL+A  A   D+ K T  VVD  P     +  A + +  SE PT   T+    +L++P   VE++
Sbjct:    6 IDPDSL--PPAVGYSQATVAEGTCIVHVAGQVGITPDGTVVGPDHRSQLEQALRNLKLALEAAGATAGDVAKVTFYVVDYGPEVLGALFEATAAVFGSEPPTSAATLVGVAALVDPEYKVEVE 126          
BLAST of Ggra953.t1 vs. uniprot
Match: A0A375GN18 (Ribonuclease n=12 Tax=Burkholderiaceae TaxID=119060 RepID=A0A375GN18_9BURK)

HSP 1 Score: 69.7 bits (169), Expect = 4.720e-12
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 0
Query:   28 RKSRRLVIINPPTLQDPVPFGYSQI-IVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQ 157
            R +  L +INPP L DP P GYS + +V+    + +VAGQG  +  G +  + FP Q+ + ++N+++AL A  AD+ D+ K TV+VVD   +      AA      + P P  T+     L    +L EI+
Sbjct:    6 RPNASLNLINPPALYDPRPNGYSHVAVVEGPARIVYVAGQGGEDAAGCLAAD-FPRQVARAMQNLRIALQAAGADVGDVAKLTVLVVDHSHDRLRTFGAALREMWGDRPAPACTLIPVPRLALDNMLFEIE 135          
BLAST of Ggra953.t1 vs. uniprot
Match: RidA family protein n=1 Tax=Cupriavidus sp. IDO TaxID=1539142 RepID=UPI00057982E2 (RidA family protein n=1 Tax=Cupriavidus sp. IDO TaxID=1539142 RepID=UPI00057982E2)

HSP 1 Score: 69.7 bits (169), Expect = 4.720e-12
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 0
Query:   29 KSRRLVIINPPTLQDPVPFGYSQIIV-DTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQ 157
            KS  L  INPP L DP P GYS + V +    + ++AGQG  +  G +  + F  Q+ Q ++N+K+ALDA  AD+ D+ + TV+VVD   +  +    A      + PTP  T+     L    +L EI+
Sbjct:    7 KSNALTFINPPGLYDPRPNGYSHVAVAEGPGRIVYIAGQGGEDAAGGLSTD-FHRQVSQAMKNLKVALDAAGADVGDVARLTVLVVDHSMDRLKIFGTALREMWGDRPTPACTLIPVPRLALDNMLFEIE 135          
BLAST of Ggra953.t1 vs. uniprot
Match: RidA family protein n=1 Tax=Pseudomonas sp. 5Ae-yellow TaxID=2759848 RepID=UPI0015F50FEB (RidA family protein n=1 Tax=Pseudomonas sp. 5Ae-yellow TaxID=2759848 RepID=UPI0015F50FEB)

HSP 1 Score: 69.3 bits (168), Expect = 7.400e-12
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0
Query:   31 RRLVIINPPTLQDPVPFGYSQIIVDTRNAV-AHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQVDVAVSES 165
            ++ + INP  L DP+P GYS +++   NA    VAGQG  + +G ++ E F  QLQ+ L N+++AL A +A +  +++ TV+VVD +    + I  A   +    PTP  T+     L   G+L+EI     +  +
Sbjct:    8 QQALAINPAGLYDPLPNGYSHVVIAPTNARWVFVAGQGGEDASG-LLAEGFTSQLQRCLSNLRIALAAAQASLQHVVRLTVLVVDHNQQRLDHISQALRKAWDGHPTPACTLIPVPRLALDGMLIEIDATACIGAT 142          
BLAST of Ggra953.t1 vs. uniprot
Match: RidA family protein n=2 Tax=Cupriavidus respiraculi TaxID=195930 RepID=UPI001CAFAF44 (RidA family protein n=2 Tax=Cupriavidus respiraculi TaxID=195930 RepID=UPI001CAFAF44)

HSP 1 Score: 69.3 bits (168), Expect = 8.980e-12
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 0
Query:   16 LQATDAEAHCRRRKSRRLVIINPPTLQDPVPFGYSQI-IVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQ 157
            L +    +H     +  L  INPP L DPVP GYS + +V T   + + AGQG  N  G +  + F EQ++Q + N+++AL A  AD+ D+ K TV+VVD      E   AA      +   P  T+     L   G+L EI+
Sbjct:    8 LPSQPTRSHHASASANVLRFINPPALYDPVPNGYSHVAVVTTPGRIVYAAGQGGENMHGYLPAD-FAEQVRQAMWNMRIALRAGGADVPDVAKLTVLVVDHSMEKLEIFGAALREMWGDWEPPACTLIPVPRLALDGMLFEIE 149          
BLAST of Ggra953.t1 vs. uniprot
Match: RidA family protein n=1 Tax=Mongoliimonas terrestris TaxID=1709001 RepID=UPI00094971BA (RidA family protein n=1 Tax=Mongoliimonas terrestris TaxID=1709001 RepID=UPI00094971BA)

HSP 1 Score: 68.9 bits (167), Expect = 1.260e-11
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 0
Query:   33 LVIINPPTLQDPVPFGYSQ-IIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEADMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEPGVLVEIQVDVA 161
            L I+NPP+L DP P GYS  +I+     +A V+GQG F+ TG +  + F  Q++Q   N+ LAL+A+ A    ++K TV VVD D +   G+L  + +       P  T+ S   L    +L E++  VA
Sbjct:   27 LAIVNPPSLGDPTPKGYSTAVIIPAGKRIAFVSGQGGFDGTGELSPD-FATQVKQAYANLGLALEALGARPDQVVKLTVFVVDHDMSKL-GVLTETVVQMFAPTLPAQTLISVPKLAIDPMLFEVEAVVA 154          
The following BLAST results are available for this feature:
BLAST of Ggra953.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR414.170e-8275.58Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4H88.550e-4347.34Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A316ESS31.490e-1438.21Enamine deaminase RidA (YjgF/YER057c/UK114 family)... [more]
RidA family protein n=1 Tax=Cupriavidus pampae TaxID=659251 RepID=UPI001CAF501F2.270e-1337.40RidA family protein n=1 Tax=Cupriavidus pampae Tax... [more]
A0A7V9T0R62.460e-1337.40RidA family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A375GN184.720e-1234.35Ribonuclease n=12 Tax=Burkholderiaceae TaxID=11906... [more]
RidA family protein n=1 Tax=Cupriavidus sp. IDO TaxID=1539142 RepID=UPI00057982E24.720e-1235.38RidA family protein n=1 Tax=Cupriavidus sp. IDO Ta... [more]
RidA family protein n=1 Tax=Pseudomonas sp. 5Ae-yellow TaxID=2759848 RepID=UPI0015F50FEB7.400e-1233.09RidA family protein n=1 Tax=Pseudomonas sp. 5Ae-ye... [more]
RidA family protein n=2 Tax=Cupriavidus respiraculi TaxID=195930 RepID=UPI001CAFAF448.980e-1234.97RidA family protein n=2 Tax=Cupriavidus respiracul... [more]
RidA family protein n=1 Tax=Mongoliimonas terrestris TaxID=1709001 RepID=UPI00094971BA1.260e-1136.15RidA family protein n=1 Tax=Mongoliimonas terrestr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 32..164
e-value: 1.1E-16
score: 63.0
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 34..164
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 48..161
e-value: 2.9E-16
score: 59.6
IPR006175YjgF/YER057c/UK114 familyPANTHERPTHR118032-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDAcoord: 32..158
NoneNo IPR availablePANTHERPTHR11803:SF34BLL5130 PROTEINcoord: 32..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..173
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 49..158
e-value: 2.53927E-16
score: 68.7391

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:918018..918539 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra953.t1Ggra953.t1Gracilaria gracilis GNS1m malemRNAtig00000049_pilon 918018..918539 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra953.t1 ID=Ggra953.t1|Name=Ggra953.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MHIRSVFVILALCFVLQATDAEAHCRRRKSRRLVIINPPTLQDPVPFGYS
QIIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEA
DMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEP
GVLVEIQVDVAVSESFVWRLVCY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035959RutC-like_sf
IPR006175YjgF/YER057c/UK114