Ggra953.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra953.t1
Unique NameGgra953.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:918018..918539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1306990.BARG01000101_gene9564
PFAMsRibonuc_L-PSP
Max annot lvl201174|Actinobacteria
Evalue4.48e-13
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria,2IHQ7@201174|Actinobacteria
Descriptionendoribonuclease L-PSP
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra953Ggra953Gracilaria gracilis GNS1m malegenetig00000049_pilon 918018..918539 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra953.t1.start1Ggra953.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 918018..918020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra953.t1.CDS1Ggra953.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 918018..918539 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra953.t1.exon1Ggra953.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 918018..918539 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra953.t1.stop1Ggra953.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 918537..918539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra953.t1Ggra953.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 918018..918539 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra953.t1 ID=Ggra953.t1|Name=Ggra953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MHIRSVFVILALCFVLQATDAEAHCRRRKSRRLVIINPPTLQDPVPFGYS
QIIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEA
DMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEP
GVLVEIQVDVAVSESFVWRLVCY*
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spliced messenger RNA

>Ggra953.t1 ID=Ggra953.t1|Name=Ggra953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000049_pilon:918018..918539+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACATTCGCTCCGTCTTTGTAATACTCGCACTATGCTTCGTCCTCCA
AGCAACAGACGCTGAAGCTCATTGCCGAAGGAGAAAAAGCCGCCGTCTCG
TGATTATCAATCCGCCCACTCTTCAGGACCCCGTCCCTTTCGGCTATTCT
CAAATAATAGTTGATACAAGGAATGCCGTCGCCCATGTCGCTGGGCAAGG
CCCATTTAATCGAACAGGCTCTATCGTTGGCGAAACCTTTCCCGAGCAGT
TGCAACAAGTCCTGCGCAACATCAAACTGGCACTGGACGCCGTTGAAGCT
GATATGAGTGACCTCTTGAAATCCACAGTTATTGTAGTTGACCTCGATCC
AAATACTGCAGAAGGTATACTGGCAGCGAGTGGTATTAGTAATTCTGAGG
TTCCAACCCCGCCAGGCACAGTGTTTTCTGCGGACTCGCTTCTCGAACCG
GGGGTTCTTGTTGAGATTCAAGTTGATGTAGCCGTCTCCGAATCTTTCGT
ATGGCGTCTGGTGTGTTATTAG
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protein sequence of Ggra953.t1

>Ggra953.t1 ID=Ggra953.t1|Name=Ggra953.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MHIRSVFVILALCFVLQATDAEAHCRRRKSRRLVIINPPTLQDPVPFGYS
QIIVDTRNAVAHVAGQGPFNRTGSIVGETFPEQLQQVLRNIKLALDAVEA
DMSDLLKSTVIVVDLDPNTAEGILAASGISNSEVPTPPGTVFSADSLLEP
GVLVEIQVDVAVSESFVWRLVCY*
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mRNA from alignment at tig00000049_pilon:918018..918539+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra953.t1 ID=Ggra953.t1|Name=Ggra953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000049_pilon:918018..918539+ (Gracilaria gracilis GNS1m male)
ATGCACATTCGCTCCGTCTTTGTAATACTCGCACTATGCTTCGTCCTCCA
AGCAACAGACGCTGAAGCTCATTGCCGAAGGAGAAAAAGCCGCCGTCTCG
TGATTATCAATCCGCCCACTCTTCAGGACCCCGTCCCTTTCGGCTATTCT
CAAATAATAGTTGATACAAGGAATGCCGTCGCCCATGTCGCTGGGCAAGG
CCCATTTAATCGAACAGGCTCTATCGTTGGCGAAACCTTTCCCGAGCAGT
TGCAACAAGTCCTGCGCAACATCAAACTGGCACTGGACGCCGTTGAAGCT
GATATGAGTGACCTCTTGAAATCCACAGTTATTGTAGTTGACCTCGATCC
AAATACTGCAGAAGGTATACTGGCAGCGAGTGGTATTAGTAATTCTGAGG
TTCCAACCCCGCCAGGCACAGTGTTTTCTGCGGACTCGCTTCTCGAACCG
GGGGTTCTTGTTGAGATTCAAGTTGATGTAGCCGTCTCCGAATCTTTCGT
ATGGCGTCTGGTGTGTTATTAG
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Coding sequence (CDS) from alignment at tig00000049_pilon:918018..918539+

>Ggra953.t1 ID=Ggra953.t1|Name=Ggra953.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000049_pilon:918018..918539+ (Gracilaria gracilis GNS1m male)
ATGCACATTCGCTCCGTCTTTGTAATACTCGCACTATGCTTCGTCCTCCA
AGCAACAGACGCTGAAGCTCATTGCCGAAGGAGAAAAAGCCGCCGTCTCG
TGATTATCAATCCGCCCACTCTTCAGGACCCCGTCCCTTTCGGCTATTCT
CAAATAATAGTTGATACAAGGAATGCCGTCGCCCATGTCGCTGGGCAAGG
CCCATTTAATCGAACAGGCTCTATCGTTGGCGAAACCTTTCCCGAGCAGT
TGCAACAAGTCCTGCGCAACATCAAACTGGCACTGGACGCCGTTGAAGCT
GATATGAGTGACCTCTTGAAATCCACAGTTATTGTAGTTGACCTCGATCC
AAATACTGCAGAAGGTATACTGGCAGCGAGTGGTATTAGTAATTCTGAGG
TTCCAACCCCGCCAGGCACAGTGTTTTCTGCGGACTCGCTTCTCGAACCG
GGGGTTCTTGTTGAGATTCAAGTTGATGTAGCCGTCTCCGAATCTTTCGT
ATGGCGTCTGGTGTGTTATTAG
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