Ggra924.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra924.t1
Unique NameGgra924.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:546623..547702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra924Ggra924Gracilaria gracilis GNS1m malegenetig00000049_pilon 546623..547702 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra924.t1.stop1Ggra924.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 546623..546625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra924.t1.CDS1Ggra924.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 546623..547702 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra924.t1.exon1Ggra924.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 546623..547702 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra924.t1.start1Ggra924.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 547700..547702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra924.t1Ggra924.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 546623..547702 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra924.t1 ID=Ggra924.t1|Name=Ggra924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MSFFTKTTSARLRAQPSHVDPYQLYELRRPYDRASNVVPQLPRQPDYAHT
RLRYRRIISSSPANSPSSVPPEANFPAAFRPARAYSFSSSDLSSFSFTSK
SSGVRADKAGIPIVTRKGGLRRCIQHVNRVSPFRRSFRRTTEIDTLRMNK
HEAAKDISSDFDISSDEDEPSFEEYRERRRNSLALPSSPLNQDNRLTRMN
TAPVVIGDLHKPAENDFKFKSPSSHPTRPFSLLHKKPAPKLEQRRFTPRE
SFPCTAQNSSPDRVHRTYSAHSPNNECDRPLPNPPMQSNKAFSNLSQFSL
KDADHREAYIRHSRTFYVSTMDPNELSVSFVLPEPKNKSSNKLLRKVMHA
FHAVRIRAA*
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spliced messenger RNA

>Ggra924.t1 ID=Ggra924.t1|Name=Ggra924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000049_pilon:546623..547702- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTCTTCACCAAGACTACATCCGCGCGCTTGCGCGCCCAGCCCTC
TCACGTTGATCCTTACCAACTGTATGAGCTTCGGCGTCCATATGATCGCG
CTTCCAACGTCGTGCCACAGCTCCCTCGTCAGCCAGACTACGCACACACT
CGTCTACGATACCGTCGCATCATCTCGAGCTCACCGGCAAACTCCCCGTC
TTCAGTTCCGCCAGAGGCGAACTTCCCAGCCGCCTTCCGGCCTGCACGTG
CCTATTCCTTCAGCAGCTCAGATTTGTCTTCATTTTCGTTCACTTCCAAA
TCTTCAGGTGTTAGGGCCGATAAGGCGGGCATCCCTATCGTCACACGGAA
AGGCGGACTTCGTCGTTGTATTCAACATGTAAATCGGGTTTCTCCATTTC
GTCGATCCTTCCGACGAACGACGGAGATAGATACTCTCCGTATGAACAAG
CATGAGGCTGCAAAGGATATAAGTTCCGATTTCGATATATCCTCTGATGA
AGATGAACCCTCATTCGAAGAATACCGGGAACGCAGACGGAACTCACTCG
CACTTCCGTCCTCTCCGCTGAATCAGGATAACAGGCTGACTCGTATGAAC
ACAGCTCCAGTGGTCATTGGAGATTTGCACAAACCAGCAGAAAACGACTT
CAAATTTAAGTCTCCTTCATCGCATCCCACGCGTCCGTTCAGCCTCCTGC
ATAAGAAGCCTGCTCCAAAACTAGAACAACGTCGCTTCACTCCTCGTGAA
TCTTTCCCCTGCACAGCGCAAAACTCCTCACCAGACCGAGTGCATCGTAC
CTACAGCGCTCACAGCCCTAACAACGAGTGTGATCGACCCCTGCCCAATC
CTCCCATGCAAAGTAACAAAGCGTTTTCGAATCTCTCACAGTTCTCGCTC
AAGGATGCTGATCATCGTGAAGCATATATCAGGCATTCTCGGACCTTCTA
TGTCTCTACTATGGATCCAAACGAACTAAGTGTCTCCTTCGTGCTGCCTG
AACCAAAGAACAAATCGTCTAACAAATTACTTCGCAAGGTGATGCATGCC
TTCCACGCCGTTCGAATTCGGGCTGCATGA
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protein sequence of Ggra924.t1

>Ggra924.t1 ID=Ggra924.t1|Name=Ggra924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MSFFTKTTSARLRAQPSHVDPYQLYELRRPYDRASNVVPQLPRQPDYAHT
RLRYRRIISSSPANSPSSVPPEANFPAAFRPARAYSFSSSDLSSFSFTSK
SSGVRADKAGIPIVTRKGGLRRCIQHVNRVSPFRRSFRRTTEIDTLRMNK
HEAAKDISSDFDISSDEDEPSFEEYRERRRNSLALPSSPLNQDNRLTRMN
TAPVVIGDLHKPAENDFKFKSPSSHPTRPFSLLHKKPAPKLEQRRFTPRE
SFPCTAQNSSPDRVHRTYSAHSPNNECDRPLPNPPMQSNKAFSNLSQFSL
KDADHREAYIRHSRTFYVSTMDPNELSVSFVLPEPKNKSSNKLLRKVMHA
FHAVRIRAA*
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mRNA from alignment at tig00000049_pilon:546623..547702-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra924.t1 ID=Ggra924.t1|Name=Ggra924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000049_pilon:546623..547702- (Gracilaria gracilis GNS1m male)
ATGAGCTTCTTCACCAAGACTACATCCGCGCGCTTGCGCGCCCAGCCCTC
TCACGTTGATCCTTACCAACTGTATGAGCTTCGGCGTCCATATGATCGCG
CTTCCAACGTCGTGCCACAGCTCCCTCGTCAGCCAGACTACGCACACACT
CGTCTACGATACCGTCGCATCATCTCGAGCTCACCGGCAAACTCCCCGTC
TTCAGTTCCGCCAGAGGCGAACTTCCCAGCCGCCTTCCGGCCTGCACGTG
CCTATTCCTTCAGCAGCTCAGATTTGTCTTCATTTTCGTTCACTTCCAAA
TCTTCAGGTGTTAGGGCCGATAAGGCGGGCATCCCTATCGTCACACGGAA
AGGCGGACTTCGTCGTTGTATTCAACATGTAAATCGGGTTTCTCCATTTC
GTCGATCCTTCCGACGAACGACGGAGATAGATACTCTCCGTATGAACAAG
CATGAGGCTGCAAAGGATATAAGTTCCGATTTCGATATATCCTCTGATGA
AGATGAACCCTCATTCGAAGAATACCGGGAACGCAGACGGAACTCACTCG
CACTTCCGTCCTCTCCGCTGAATCAGGATAACAGGCTGACTCGTATGAAC
ACAGCTCCAGTGGTCATTGGAGATTTGCACAAACCAGCAGAAAACGACTT
CAAATTTAAGTCTCCTTCATCGCATCCCACGCGTCCGTTCAGCCTCCTGC
ATAAGAAGCCTGCTCCAAAACTAGAACAACGTCGCTTCACTCCTCGTGAA
TCTTTCCCCTGCACAGCGCAAAACTCCTCACCAGACCGAGTGCATCGTAC
CTACAGCGCTCACAGCCCTAACAACGAGTGTGATCGACCCCTGCCCAATC
CTCCCATGCAAAGTAACAAAGCGTTTTCGAATCTCTCACAGTTCTCGCTC
AAGGATGCTGATCATCGTGAAGCATATATCAGGCATTCTCGGACCTTCTA
TGTCTCTACTATGGATCCAAACGAACTAAGTGTCTCCTTCGTGCTGCCTG
AACCAAAGAACAAATCGTCTAACAAATTACTTCGCAAGGTGATGCATGCC
TTCCACGCCGTTCGAATTCGGGCTGCATGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:546623..547702-

>Ggra924.t1 ID=Ggra924.t1|Name=Ggra924.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000049_pilon:546623..547702- (Gracilaria gracilis GNS1m male)
ATGAGCTTCTTCACCAAGACTACATCCGCGCGCTTGCGCGCCCAGCCCTC
TCACGTTGATCCTTACCAACTGTATGAGCTTCGGCGTCCATATGATCGCG
CTTCCAACGTCGTGCCACAGCTCCCTCGTCAGCCAGACTACGCACACACT
CGTCTACGATACCGTCGCATCATCTCGAGCTCACCGGCAAACTCCCCGTC
TTCAGTTCCGCCAGAGGCGAACTTCCCAGCCGCCTTCCGGCCTGCACGTG
CCTATTCCTTCAGCAGCTCAGATTTGTCTTCATTTTCGTTCACTTCCAAA
TCTTCAGGTGTTAGGGCCGATAAGGCGGGCATCCCTATCGTCACACGGAA
AGGCGGACTTCGTCGTTGTATTCAACATGTAAATCGGGTTTCTCCATTTC
GTCGATCCTTCCGACGAACGACGGAGATAGATACTCTCCGTATGAACAAG
CATGAGGCTGCAAAGGATATAAGTTCCGATTTCGATATATCCTCTGATGA
AGATGAACCCTCATTCGAAGAATACCGGGAACGCAGACGGAACTCACTCG
CACTTCCGTCCTCTCCGCTGAATCAGGATAACAGGCTGACTCGTATGAAC
ACAGCTCCAGTGGTCATTGGAGATTTGCACAAACCAGCAGAAAACGACTT
CAAATTTAAGTCTCCTTCATCGCATCCCACGCGTCCGTTCAGCCTCCTGC
ATAAGAAGCCTGCTCCAAAACTAGAACAACGTCGCTTCACTCCTCGTGAA
TCTTTCCCCTGCACAGCGCAAAACTCCTCACCAGACCGAGTGCATCGTAC
CTACAGCGCTCACAGCCCTAACAACGAGTGTGATCGACCCCTGCCCAATC
CTCCCATGCAAAGTAACAAAGCGTTTTCGAATCTCTCACAGTTCTCGCTC
AAGGATGCTGATCATCGTGAAGCATATATCAGGCATTCTCGGACCTTCTA
TGTCTCTACTATGGATCCAAACGAACTAAGTGTCTCCTTCGTGCTGCCTG
AACCAAAGAACAAATCGTCTAACAAATTACTTCGCAAGGTGATGCATGCC
TTCCACGCCGTTCGAATTCGGGCTGCATGA
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