Ggra915.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra915.t1
Unique NameGgra915.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length395
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:374497..375681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra915Ggra915Gracilaria gracilis GNS1m malegenetig00000049_pilon 374497..375681 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra915.t1.stop1Ggra915.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 374497..374499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra915.t1.CDS1Ggra915.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 374497..375681 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra915.t1.exon1Ggra915.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 374497..375681 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra915.t1.start1Ggra915.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 375679..375681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra915.t1Ggra915.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 374497..375681 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra915.t1 ID=Ggra915.t1|Name=Ggra915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=395bp
MSTLLALPPSLPPRAARAACDDFQFDAPPDVPRVPTALVLLASVLLALLV
LVDRVLLRVSKPRRQRAFVALFSVAFVLSLPPVLDSFFSLAANAVTYSSN
SVQFSSLQSCFGDILPRGFNPLLSLMVVLVLRLVATLTELAVILFGVYED
YRLPKQRVAKRRLALGSVVLFASLFVGALVFIRLRFSGFGCRYDGEVGRY
VCFTQPTAQSVHETFMIPLDVLGTCDHLNELVLSSTSLSSSPTECNPDSL
QTAIQSLFQLVVQSGLSNSFLIASMFVAAFSLIAALVYGLFVAHRFQKNT
TLSLRWVLTSLFMIGFSNSLSVFLFVRLVLDGRDQRKVLACGCVGSSFDI
DWSTLLVKFYSFIASFSILITFSKVEKEIDEAQNEVHNHNTDST*
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spliced messenger RNA

>Ggra915.t1 ID=Ggra915.t1|Name=Ggra915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000049_pilon:374497..375681- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACGCTGCTCGCCCTCCCGCCCAGCCTGCCGCCGCGCGCCGCCAG
AGCCGCCTGCGATGATTTCCAATTCGACGCCCCTCCAGACGTCCCGCGCG
TCCCGACGGCGCTCGTGCTGCTCGCGTCAGTGCTACTGGCGCTGCTCGTG
CTGGTCGACCGCGTGCTGCTACGCGTCTCCAAGCCGCGTCGACAACGGGC
GTTTGTCGCGCTCTTCTCCGTCGCGTTTGTGTTATCGTTGCCGCCTGTGC
TTGACTCCTTCTTCTCGCTGGCCGCCAATGCCGTAACGTACTCGTCAAAC
TCCGTGCAGTTCTCTTCGCTGCAGTCCTGCTTCGGAGACATTCTTCCGCG
CGGCTTCAACCCGCTGCTGTCGCTAATGGTCGTGCTGGTGCTTCGGCTCG
TCGCCACGCTCACGGAGCTCGCTGTCATTTTGTTCGGCGTCTACGAGGAC
TACCGGCTGCCGAAGCAGCGAGTTGCGAAGCGCAGACTGGCGCTCGGCAG
CGTCGTTTTGTTCGCGTCTTTGTTTGTGGGCGCGCTCGTCTTCATCCGCC
TCCGCTTTTCCGGCTTTGGATGCCGGTATGACGGAGAGGTGGGTAGGTAC
GTCTGCTTCACGCAGCCCACCGCGCAGTCCGTGCATGAAACGTTCATGAT
TCCGCTCGACGTGCTGGGAACATGTGATCATCTGAACGAGCTTGTGCTAT
CGTCCACGTCTTTGTCGTCTTCGCCGACTGAATGTAACCCAGACTCGCTT
CAGACGGCCATACAGAGCCTGTTTCAACTTGTAGTTCAAAGCGGCCTGTC
TAACTCATTCCTGATCGCCAGTATGTTTGTTGCTGCTTTCAGCTTGATTG
CCGCGCTTGTTTATGGCCTGTTCGTTGCCCATAGGTTCCAGAAGAACACC
ACTCTCAGTTTGAGGTGGGTTTTGACTTCGTTATTCATGATTGGCTTCAG
TAACTCGCTTTCTGTGTTTTTGTTTGTTCGACTGGTGCTGGACGGCAGAG
ACCAGCGAAAAGTTCTGGCGTGCGGTTGCGTCGGTTCAAGCTTTGACATT
GATTGGAGCACTTTGCTTGTCAAGTTCTACAGCTTCATTGCTTCTTTTAG
TATCTTGATAACCTTTTCGAAAGTCGAAAAGGAGATTGACGAGGCACAGA
ACGAAGTTCACAATCATAACACAGACAGTACATGA
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protein sequence of Ggra915.t1

>Ggra915.t1 ID=Ggra915.t1|Name=Ggra915.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=395bp
MSTLLALPPSLPPRAARAACDDFQFDAPPDVPRVPTALVLLASVLLALLV
LVDRVLLRVSKPRRQRAFVALFSVAFVLSLPPVLDSFFSLAANAVTYSSN
SVQFSSLQSCFGDILPRGFNPLLSLMVVLVLRLVATLTELAVILFGVYED
YRLPKQRVAKRRLALGSVVLFASLFVGALVFIRLRFSGFGCRYDGEVGRY
VCFTQPTAQSVHETFMIPLDVLGTCDHLNELVLSSTSLSSSPTECNPDSL
QTAIQSLFQLVVQSGLSNSFLIASMFVAAFSLIAALVYGLFVAHRFQKNT
TLSLRWVLTSLFMIGFSNSLSVFLFVRLVLDGRDQRKVLACGCVGSSFDI
DWSTLLVKFYSFIASFSILITFSKVEKEIDEAQNEVHNHNTDST*
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mRNA from alignment at tig00000049_pilon:374497..375681-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra915.t1 ID=Ggra915.t1|Name=Ggra915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000049_pilon:374497..375681- (Gracilaria gracilis GNS1m male)
ATGTCCACGCTGCTCGCCCTCCCGCCCAGCCTGCCGCCGCGCGCCGCCAG
AGCCGCCTGCGATGATTTCCAATTCGACGCCCCTCCAGACGTCCCGCGCG
TCCCGACGGCGCTCGTGCTGCTCGCGTCAGTGCTACTGGCGCTGCTCGTG
CTGGTCGACCGCGTGCTGCTACGCGTCTCCAAGCCGCGTCGACAACGGGC
GTTTGTCGCGCTCTTCTCCGTCGCGTTTGTGTTATCGTTGCCGCCTGTGC
TTGACTCCTTCTTCTCGCTGGCCGCCAATGCCGTAACGTACTCGTCAAAC
TCCGTGCAGTTCTCTTCGCTGCAGTCCTGCTTCGGAGACATTCTTCCGCG
CGGCTTCAACCCGCTGCTGTCGCTAATGGTCGTGCTGGTGCTTCGGCTCG
TCGCCACGCTCACGGAGCTCGCTGTCATTTTGTTCGGCGTCTACGAGGAC
TACCGGCTGCCGAAGCAGCGAGTTGCGAAGCGCAGACTGGCGCTCGGCAG
CGTCGTTTTGTTCGCGTCTTTGTTTGTGGGCGCGCTCGTCTTCATCCGCC
TCCGCTTTTCCGGCTTTGGATGCCGGTATGACGGAGAGGTGGGTAGGTAC
GTCTGCTTCACGCAGCCCACCGCGCAGTCCGTGCATGAAACGTTCATGAT
TCCGCTCGACGTGCTGGGAACATGTGATCATCTGAACGAGCTTGTGCTAT
CGTCCACGTCTTTGTCGTCTTCGCCGACTGAATGTAACCCAGACTCGCTT
CAGACGGCCATACAGAGCCTGTTTCAACTTGTAGTTCAAAGCGGCCTGTC
TAACTCATTCCTGATCGCCAGTATGTTTGTTGCTGCTTTCAGCTTGATTG
CCGCGCTTGTTTATGGCCTGTTCGTTGCCCATAGGTTCCAGAAGAACACC
ACTCTCAGTTTGAGGTGGGTTTTGACTTCGTTATTCATGATTGGCTTCAG
TAACTCGCTTTCTGTGTTTTTGTTTGTTCGACTGGTGCTGGACGGCAGAG
ACCAGCGAAAAGTTCTGGCGTGCGGTTGCGTCGGTTCAAGCTTTGACATT
GATTGGAGCACTTTGCTTGTCAAGTTCTACAGCTTCATTGCTTCTTTTAG
TATCTTGATAACCTTTTCGAAAGTCGAAAAGGAGATTGACGAGGCACAGA
ACGAAGTTCACAATCATAACACAGACAGTACATGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:374497..375681-

>Ggra915.t1 ID=Ggra915.t1|Name=Ggra915.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1185bp|location=Sequence derived from alignment at tig00000049_pilon:374497..375681- (Gracilaria gracilis GNS1m male)
ATGTCCACGCTGCTCGCCCTCCCGCCCAGCCTGCCGCCGCGCGCCGCCAG
AGCCGCCTGCGATGATTTCCAATTCGACGCCCCTCCAGACGTCCCGCGCG
TCCCGACGGCGCTCGTGCTGCTCGCGTCAGTGCTACTGGCGCTGCTCGTG
CTGGTCGACCGCGTGCTGCTACGCGTCTCCAAGCCGCGTCGACAACGGGC
GTTTGTCGCGCTCTTCTCCGTCGCGTTTGTGTTATCGTTGCCGCCTGTGC
TTGACTCCTTCTTCTCGCTGGCCGCCAATGCCGTAACGTACTCGTCAAAC
TCCGTGCAGTTCTCTTCGCTGCAGTCCTGCTTCGGAGACATTCTTCCGCG
CGGCTTCAACCCGCTGCTGTCGCTAATGGTCGTGCTGGTGCTTCGGCTCG
TCGCCACGCTCACGGAGCTCGCTGTCATTTTGTTCGGCGTCTACGAGGAC
TACCGGCTGCCGAAGCAGCGAGTTGCGAAGCGCAGACTGGCGCTCGGCAG
CGTCGTTTTGTTCGCGTCTTTGTTTGTGGGCGCGCTCGTCTTCATCCGCC
TCCGCTTTTCCGGCTTTGGATGCCGGTATGACGGAGAGGTGGGTAGGTAC
GTCTGCTTCACGCAGCCCACCGCGCAGTCCGTGCATGAAACGTTCATGAT
TCCGCTCGACGTGCTGGGAACATGTGATCATCTGAACGAGCTTGTGCTAT
CGTCCACGTCTTTGTCGTCTTCGCCGACTGAATGTAACCCAGACTCGCTT
CAGACGGCCATACAGAGCCTGTTTCAACTTGTAGTTCAAAGCGGCCTGTC
TAACTCATTCCTGATCGCCAGTATGTTTGTTGCTGCTTTCAGCTTGATTG
CCGCGCTTGTTTATGGCCTGTTCGTTGCCCATAGGTTCCAGAAGAACACC
ACTCTCAGTTTGAGGTGGGTTTTGACTTCGTTATTCATGATTGGCTTCAG
TAACTCGCTTTCTGTGTTTTTGTTTGTTCGACTGGTGCTGGACGGCAGAG
ACCAGCGAAAAGTTCTGGCGTGCGGTTGCGTCGGTTCAAGCTTTGACATT
GATTGGAGCACTTTGCTTGTCAAGTTCTACAGCTTCATTGCTTCTTTTAG
TATCTTGATAACCTTTTCGAAAGTCGAAAAGGAGATTGACGAGGCACAGA
ACGAAGTTCACAATCATAACACAGACAGTACATGA
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