Ggra6156.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6156.t1
Unique NameGgra6156.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:678924..679544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704906.1
PFAMsDUF202
Max annot lvl2759|Eukaryota
Evalue9.01e-25
EggNOG OGs2D6QC@1|root,2T2MT@2759|Eukaryota
DescriptionDomain of unknown function (DUF202)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6156Ggra6156Gracilaria gracilis GNS1m malegenetig00000045_pilon 678924..679544 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6156.t1.stop1Ggra6156.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 678924..678926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6156.t1.CDS1Ggra6156.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 678924..679544 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6156.t1.exon1Ggra6156.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 678924..679544 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6156.t1.start1Ggra6156.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 679542..679544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6156.t1Ggra6156.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 678924..679544 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6156.t1 ID=Ggra6156.t1|Name=Ggra6156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp
MNGAGSIESPEMVPLISDADDEITPVLTSVRIDGGQPEENGENVKADGKK
KKDYGAVEKPPKKKKEKEKSPQKQVADLLKTDMAAERTFFKWLWTGLHTG
AIGSFIFVTFDIDKNDPLRVVIVGFSWFIALLLVLYGTFAYYRRRHALRT
GNIEHVPAFTREHSPLVVVSALLLVVGVTMTYALMQGGHNEMASVSPTGG
VSDTGQ*
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spliced messenger RNA

>Ggra6156.t1 ID=Ggra6156.t1|Name=Ggra6156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000045_pilon:678924..679544- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGTGCAGGGTCTATTGAGTCGCCAGAAATGGTGCCACTTATCTC
CGACGCAGACGATGAAATAACTCCGGTGCTTACAAGCGTTCGGATCGACG
GCGGGCAACCCGAGGAGAATGGGGAAAACGTAAAAGCTGACGGAAAGAAG
AAGAAGGATTATGGTGCGGTAGAGAAGCCGCCGAAAAAGAAGAAGGAGAA
GGAAAAATCTCCTCAGAAGCAAGTGGCAGACTTGCTGAAGACAGACATGG
CAGCAGAACGGACATTCTTCAAGTGGTTGTGGACGGGACTTCACACTGGC
GCTATCGGGTCGTTCATTTTCGTGACGTTCGATATAGATAAGAATGATCC
GCTAAGAGTTGTTATCGTTGGTTTCTCATGGTTCATCGCGCTTCTTCTTG
TGCTGTACGGCACATTTGCGTACTACCGACGCCGACATGCTTTGCGTACA
GGGAATATTGAACACGTACCAGCGTTCACCAGAGAACACAGCCCGTTAGT
GGTAGTGTCGGCTTTGCTGCTGGTGGTAGGTGTGACTATGACCTATGCGT
TAATGCAAGGAGGCCATAATGAAATGGCCAGCGTTTCTCCAACAGGGGGG
GTATCTGACACAGGTCAATAG
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protein sequence of Ggra6156.t1

>Ggra6156.t1 ID=Ggra6156.t1|Name=Ggra6156.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MNGAGSIESPEMVPLISDADDEITPVLTSVRIDGGQPEENGENVKADGKK
KKDYGAVEKPPKKKKEKEKSPQKQVADLLKTDMAAERTFFKWLWTGLHTG
AIGSFIFVTFDIDKNDPLRVVIVGFSWFIALLLVLYGTFAYYRRRHALRT
GNIEHVPAFTREHSPLVVVSALLLVVGVTMTYALMQGGHNEMASVSPTGG
VSDTGQ*
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mRNA from alignment at tig00000045_pilon:678924..679544-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6156.t1 ID=Ggra6156.t1|Name=Ggra6156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000045_pilon:678924..679544- (Gracilaria gracilis GNS1m male)
ATGAACGGTGCAGGGTCTATTGAGTCGCCAGAAATGGTGCCACTTATCTC
CGACGCAGACGATGAAATAACTCCGGTGCTTACAAGCGTTCGGATCGACG
GCGGGCAACCCGAGGAGAATGGGGAAAACGTAAAAGCTGACGGAAAGAAG
AAGAAGGATTATGGTGCGGTAGAGAAGCCGCCGAAAAAGAAGAAGGAGAA
GGAAAAATCTCCTCAGAAGCAAGTGGCAGACTTGCTGAAGACAGACATGG
CAGCAGAACGGACATTCTTCAAGTGGTTGTGGACGGGACTTCACACTGGC
GCTATCGGGTCGTTCATTTTCGTGACGTTCGATATAGATAAGAATGATCC
GCTAAGAGTTGTTATCGTTGGTTTCTCATGGTTCATCGCGCTTCTTCTTG
TGCTGTACGGCACATTTGCGTACTACCGACGCCGACATGCTTTGCGTACA
GGGAATATTGAACACGTACCAGCGTTCACCAGAGAACACAGCCCGTTAGT
GGTAGTGTCGGCTTTGCTGCTGGTGGTAGGTGTGACTATGACCTATGCGT
TAATGCAAGGAGGCCATAATGAAATGGCCAGCGTTTCTCCAACAGGGGGG
GTATCTGACACAGGTCAATAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:678924..679544-

>Ggra6156.t1 ID=Ggra6156.t1|Name=Ggra6156.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00000045_pilon:678924..679544- (Gracilaria gracilis GNS1m male)
ATGAACGGTGCAGGGTCTATTGAGTCGCCAGAAATGGTGCCACTTATCTC
CGACGCAGACGATGAAATAACTCCGGTGCTTACAAGCGTTCGGATCGACG
GCGGGCAACCCGAGGAGAATGGGGAAAACGTAAAAGCTGACGGAAAGAAG
AAGAAGGATTATGGTGCGGTAGAGAAGCCGCCGAAAAAGAAGAAGGAGAA
GGAAAAATCTCCTCAGAAGCAAGTGGCAGACTTGCTGAAGACAGACATGG
CAGCAGAACGGACATTCTTCAAGTGGTTGTGGACGGGACTTCACACTGGC
GCTATCGGGTCGTTCATTTTCGTGACGTTCGATATAGATAAGAATGATCC
GCTAAGAGTTGTTATCGTTGGTTTCTCATGGTTCATCGCGCTTCTTCTTG
TGCTGTACGGCACATTTGCGTACTACCGACGCCGACATGCTTTGCGTACA
GGGAATATTGAACACGTACCAGCGTTCACCAGAGAACACAGCCCGTTAGT
GGTAGTGTCGGCTTTGCTGCTGGTGGTAGGTGTGACTATGACCTATGCGT
TAATGCAAGGAGGCCATAATGAAATGGCCAGCGTTTCTCCAACAGGGGGG
GTATCTGACACAGGTCAATAG
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