Ggra6054.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6054.t1
Unique NameGgra6054.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:372426..372986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123242.JH636435_gene1100
PFAMsMoCF_biosynth
Max annot lvl203682|Planctomycetes
KEGG rclassRC00002
KEGG koko:K03638,ko:K03831
KEGG ReactionR09726
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Evalue1.53e-67
EggNOG OGsCOG0521@1|root,COG0521@2|Bacteria,2IYUD@203682|Planctomycetes
EC2.7.7.75
DescriptionMolybdenum cofactor biosynthesis
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6054Ggra6054Gracilaria gracilis GNS1m malegenetig00000045_pilon 372426..372986 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6054.t1.start1Ggra6054.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 372426..372428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6054.t1.CDS1Ggra6054.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 372426..372986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6054.t1.exon1Ggra6054.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 372426..372986 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6054.t1.stop1Ggra6054.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 372984..372986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6054.t1Ggra6054.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 372426..372986 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6054.t1 ID=Ggra6054.t1|Name=Ggra6054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MTESSSPTPNIGVLTISDRAFHGQYEDRGGPAIQSYISDHFLSPYEIVPQ
TVPDEMELIQKTMKSMAEKCCLVLTTGGTGPAPRDVTPEATEAVCQKLLP
GFGELMRAVSVQKVPTAILSRQTAGVCGTSLIVNLPGSPKAIAECLDPVL
PAIPHAVRLAGAEQVLRLKPEYHIKGKMCSECNVKH*
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spliced messenger RNA

>Ggra6054.t1 ID=Ggra6054.t1|Name=Ggra6054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:372426..372986+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAATCTTCCTCCCCGACACCGAACATTGGAGTCTTGACAATCTC
CGACCGCGCCTTTCATGGCCAATACGAAGACAGAGGAGGGCCAGCTATTC
AGTCATACATTAGCGATCATTTCTTATCTCCGTATGAAATCGTGCCACAA
ACTGTACCAGATGAAATGGAACTAATTCAAAAGACCATGAAATCGATGGC
AGAGAAATGCTGTCTAGTGCTAACAACTGGCGGAACAGGGCCAGCACCAA
GAGACGTCACCCCAGAGGCTACTGAGGCTGTGTGTCAGAAGCTTCTTCCT
GGTTTTGGTGAACTCATGAGAGCTGTTTCGGTACAAAAAGTACCCACTGC
TATTCTCTCTAGACAAACTGCAGGCGTATGTGGTACTTCACTCATAGTTA
ATTTGCCTGGTAGTCCGAAGGCTATCGCCGAATGTTTGGACCCGGTTTTG
CCGGCTATTCCGCATGCAGTGCGCCTCGCAGGAGCTGAACAAGTCCTTCG
CCTCAAGCCAGAGTACCACATTAAGGGCAAAATGTGTTCGGAGTGCAATG
TGAAGCACTAA
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protein sequence of Ggra6054.t1

>Ggra6054.t1 ID=Ggra6054.t1|Name=Ggra6054.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MTESSSPTPNIGVLTISDRAFHGQYEDRGGPAIQSYISDHFLSPYEIVPQ
TVPDEMELIQKTMKSMAEKCCLVLTTGGTGPAPRDVTPEATEAVCQKLLP
GFGELMRAVSVQKVPTAILSRQTAGVCGTSLIVNLPGSPKAIAECLDPVL
PAIPHAVRLAGAEQVLRLKPEYHIKGKMCSECNVKH*
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mRNA from alignment at tig00000045_pilon:372426..372986+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6054.t1 ID=Ggra6054.t1|Name=Ggra6054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:372426..372986+ (Gracilaria gracilis GNS1m male)
ATGACCGAATCTTCCTCCCCGACACCGAACATTGGAGTCTTGACAATCTC
CGACCGCGCCTTTCATGGCCAATACGAAGACAGAGGAGGGCCAGCTATTC
AGTCATACATTAGCGATCATTTCTTATCTCCGTATGAAATCGTGCCACAA
ACTGTACCAGATGAAATGGAACTAATTCAAAAGACCATGAAATCGATGGC
AGAGAAATGCTGTCTAGTGCTAACAACTGGCGGAACAGGGCCAGCACCAA
GAGACGTCACCCCAGAGGCTACTGAGGCTGTGTGTCAGAAGCTTCTTCCT
GGTTTTGGTGAACTCATGAGAGCTGTTTCGGTACAAAAAGTACCCACTGC
TATTCTCTCTAGACAAACTGCAGGCGTATGTGGTACTTCACTCATAGTTA
ATTTGCCTGGTAGTCCGAAGGCTATCGCCGAATGTTTGGACCCGGTTTTG
CCGGCTATTCCGCATGCAGTGCGCCTCGCAGGAGCTGAACAAGTCCTTCG
CCTCAAGCCAGAGTACCACATTAAGGGCAAAATGTGTTCGGAGTGCAATG
TGAAGCACTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:372426..372986+

>Ggra6054.t1 ID=Ggra6054.t1|Name=Ggra6054.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:372426..372986+ (Gracilaria gracilis GNS1m male)
ATGACCGAATCTTCCTCCCCGACACCGAACATTGGAGTCTTGACAATCTC
CGACCGCGCCTTTCATGGCCAATACGAAGACAGAGGAGGGCCAGCTATTC
AGTCATACATTAGCGATCATTTCTTATCTCCGTATGAAATCGTGCCACAA
ACTGTACCAGATGAAATGGAACTAATTCAAAAGACCATGAAATCGATGGC
AGAGAAATGCTGTCTAGTGCTAACAACTGGCGGAACAGGGCCAGCACCAA
GAGACGTCACCCCAGAGGCTACTGAGGCTGTGTGTCAGAAGCTTCTTCCT
GGTTTTGGTGAACTCATGAGAGCTGTTTCGGTACAAAAAGTACCCACTGC
TATTCTCTCTAGACAAACTGCAGGCGTATGTGGTACTTCACTCATAGTTA
ATTTGCCTGGTAGTCCGAAGGCTATCGCCGAATGTTTGGACCCGGTTTTG
CCGGCTATTCCGCATGCAGTGCGCCTCGCAGGAGCTGAACAAGTCCTTCG
CCTCAAGCCAGAGTACCACATTAAGGGCAAAATGTGTTCGGAGTGCAATG
TGAAGCACTAA
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