Ggra6084.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6084.t1
Unique Name	Ggra6084.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:507331..509274 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ20559
PFAMs	PP2C,Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K17506
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	1.02e-113
EggNOG OGs	COG0515@1\|root,COG0631@1\|root,KOG0192@2759\|Eukaryota,KOG0698@2759\|Eukaryota,37Q08@33090\|Viridiplantae,3G9K7@35493\|Streptophyta
EC	3.1.3.16
Description	Protein kinase and PP2C-like domain-containing
COG category	T
BRITE	ko00000,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6084	Ggra6084	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 507331..509274 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6084.t1.stop1	Ggra6084.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 507331..507333 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6084.t1.CDS1	Ggra6084.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 507331..509274 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6084.t1.exon1	Ggra6084.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 507331..509274 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6084.t1.start1	Ggra6084.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 509272..509274 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6084.t1	Ggra6084.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 507331..509274 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:507331..509274-
coding sequence from alignment at tig00000045_pilon:507331..509274-

mRNA sequence

>Ggra6084.t1 ID=Ggra6084.t1|Name=Ggra6084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp
MGSTGDIFWRELSPQFFSNLQLKAEGAGASVYRGVLPSLNPSEKPCTVAL
RKPRITSMSALSRFEAEIRLRSRISHPNLLPLLGACTTPPNYCTVSPWMN
GGTMFDVLHAKSVKMSFERLIQLTLQFAKAMAHMHQLNLVHRDLKTANVL
LDSKWENLMVADLDLAVDVNELFSAASRNGGRALHRGPSNGRLSHMVGTL
VYMAPEVLQGRPHSFAADVYAFAITVNEMAACAVPYVDRKMPVPELHTVL
ETRFNEVKLRGAIVKNHLRPVLAHGVPEEFSNLIQQCWHPDPEQRPNFIQ
IVSVLDSLLGKGSAYLSQFTGSTFDTDEHLAATSKNLKIDDTNLVLHEIR
ASAIKPRKPIWELCGRKQQNPGYGRMEIENDPKRFEVTASLSSTCGERGP
DRMEDRSLVETNLAKLPNTHLFAVFDGHGGQNCSDFVARNFPGALFRAWS
NEDATPESALIHAFEDVDYAFLKDSPAEENSGCTGLASLIIDSTLYVANA
GDCRCILSRKDGTVLALSKDHVATDPAEQARVVARGGFVSATGRVMGCLM
VSRSLGDRAFKKYISATPDIVKQHLTAEDDFIVMASDGLWDVVPVDEAAA
LVRSTVRVPELAAKRLALKAVELGSDDNISVIVAFFGGNVSFSYFQS*

spliced messenger RNA

>Ggra6084.t1 ID=Ggra6084.t1|Name=Ggra6084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00000045_pilon:507331..509274- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCTACGGGCGATATTTTCTGGCGCGAATTAAGTCCACAGTTCTT
CTCCAACCTTCAACTCAAGGCGGAAGGTGCCGGAGCCTCCGTGTACCGTG
GCGTGCTTCCCTCCTTAAACCCCTCAGAAAAGCCATGCACCGTCGCGTTG
CGAAAGCCCAGAATCACCTCAATGTCAGCCCTCAGTCGCTTCGAAGCAGA
AATCCGTCTTCGTTCAAGGATATCCCACCCTAACCTACTCCCGCTTCTGG
GAGCCTGTACCACCCCCCCTAACTACTGCACCGTTTCACCATGGATGAAT
GGCGGCACCATGTTTGACGTCTTGCATGCCAAGTCTGTCAAGATGTCTTT
CGAACGCCTTATTCAGCTAACTTTGCAGTTCGCGAAGGCCATGGCCCACA
TGCACCAACTCAATCTTGTACACCGTGACCTGAAGACCGCTAACGTTCTC
CTTGACAGTAAGTGGGAGAACCTTATGGTCGCAGATCTTGACCTCGCTGT
TGATGTCAACGAACTTTTTTCGGCCGCCTCTCGCAACGGCGGCCGTGCAC
TTCACCGAGGGCCGTCGAATGGTAGACTGTCTCACATGGTCGGAACCCTG
GTTTATATGGCTCCCGAAGTTTTGCAAGGTCGGCCCCATTCATTTGCTGC
AGATGTTTACGCATTTGCTATTACCGTCAACGAGATGGCAGCTTGTGCCG
TTCCATACGTTGACAGAAAGATGCCCGTGCCCGAGTTGCACACCGTGTTG
GAGACACGTTTCAATGAAGTGAAGCTGCGTGGCGCAATAGTCAAGAACCA
TCTCAGACCCGTTCTAGCACACGGTGTTCCGGAAGAGTTCAGCAATCTTA
TTCAACAATGTTGGCATCCTGATCCTGAGCAACGCCCGAATTTCATTCAG
ATTGTTTCTGTCTTAGACTCCTTGCTTGGAAAAGGTTCTGCCTACCTGTC
GCAGTTCACCGGCTCCACTTTTGATACGGATGAACACCTTGCTGCCACTT
CGAAGAATTTGAAGATCGATGACACTAATCTTGTGTTGCACGAAATCAGG
GCAAGTGCTATCAAACCCCGAAAACCCATTTGGGAGCTGTGCGGTCGGAA
ACAACAAAACCCTGGATATGGTCGCATGGAGATAGAAAATGACCCAAAAC
GGTTTGAGGTCACGGCTTCGTTGTCATCCACCTGTGGAGAACGGGGTCCT
GATCGCATGGAAGATCGAAGTCTTGTCGAAACGAATTTGGCGAAACTCCC
AAACACTCACTTGTTCGCGGTTTTTGATGGTCATGGTGGCCAAAACTGTT
CCGATTTTGTGGCAAGAAACTTCCCTGGAGCATTGTTCCGTGCTTGGTCC
AACGAAGATGCCACACCGGAATCGGCTCTTATCCACGCATTTGAAGACGT
CGATTATGCGTTTTTGAAGGACTCTCCCGCTGAAGAAAATAGTGGCTGTA
CCGGTCTCGCATCTCTTATCATTGACTCTACTCTGTATGTGGCCAACGCT
GGAGATTGCCGATGTATCCTAAGCCGAAAAGACGGCACTGTACTCGCGCT
GAGCAAGGACCATGTGGCCACTGATCCAGCAGAGCAAGCCAGGGTGGTGG
CAAGGGGCGGATTTGTGTCTGCCACTGGTCGGGTGATGGGTTGCCTCATG
GTATCAAGATCACTGGGAGATCGAGCTTTCAAGAAGTATATCTCGGCCAC
ACCAGATATTGTCAAACAGCATCTGACTGCCGAAGACGATTTTATTGTTA
TGGCTAGCGACGGGTTGTGGGATGTCGTACCGGTCGACGAGGCAGCCGCA
CTCGTTCGATCTACAGTACGTGTCCCAGAACTAGCTGCCAAGAGACTGGC
ACTGAAAGCCGTTGAACTAGGTTCGGACGACAACATCTCCGTTATCGTCG
CGTTCTTCGGCGGAAATGTTAGTTTCAGTTATTTTCAGAGCTAG

protein sequence of Ggra6084.t1

>Ggra6084.t1 ID=Ggra6084.t1|Name=Ggra6084.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=648bp
MGSTGDIFWRELSPQFFSNLQLKAEGAGASVYRGVLPSLNPSEKPCTVAL
RKPRITSMSALSRFEAEIRLRSRISHPNLLPLLGACTTPPNYCTVSPWMN
GGTMFDVLHAKSVKMSFERLIQLTLQFAKAMAHMHQLNLVHRDLKTANVL
LDSKWENLMVADLDLAVDVNELFSAASRNGGRALHRGPSNGRLSHMVGTL
VYMAPEVLQGRPHSFAADVYAFAITVNEMAACAVPYVDRKMPVPELHTVL
ETRFNEVKLRGAIVKNHLRPVLAHGVPEEFSNLIQQCWHPDPEQRPNFIQ
IVSVLDSLLGKGSAYLSQFTGSTFDTDEHLAATSKNLKIDDTNLVLHEIR
ASAIKPRKPIWELCGRKQQNPGYGRMEIENDPKRFEVTASLSSTCGERGP
DRMEDRSLVETNLAKLPNTHLFAVFDGHGGQNCSDFVARNFPGALFRAWS
NEDATPESALIHAFEDVDYAFLKDSPAEENSGCTGLASLIIDSTLYVANA
GDCRCILSRKDGTVLALSKDHVATDPAEQARVVARGGFVSATGRVMGCLM
VSRSLGDRAFKKYISATPDIVKQHLTAEDDFIVMASDGLWDVVPVDEAAA
LVRSTVRVPELAAKRLALKAVELGSDDNISVIVAFFGGNVSFSYFQS*

mRNA from alignment at tig00000045_pilon:507331..509274-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6084.t1 ID=Ggra6084.t1|Name=Ggra6084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00000045_pilon:507331..509274- (Gracilaria gracilis GNS1m male)
ATGGGTTCTACGGGCGATATTTTCTGGCGCGAATTAAGTCCACAGTTCTT
CTCCAACCTTCAACTCAAGGCGGAAGGTGCCGGAGCCTCCGTGTACCGTG
GCGTGCTTCCCTCCTTAAACCCCTCAGAAAAGCCATGCACCGTCGCGTTG
CGAAAGCCCAGAATCACCTCAATGTCAGCCCTCAGTCGCTTCGAAGCAGA
AATCCGTCTTCGTTCAAGGATATCCCACCCTAACCTACTCCCGCTTCTGG
GAGCCTGTACCACCCCCCCTAACTACTGCACCGTTTCACCATGGATGAAT
GGCGGCACCATGTTTGACGTCTTGCATGCCAAGTCTGTCAAGATGTCTTT
CGAACGCCTTATTCAGCTAACTTTGCAGTTCGCGAAGGCCATGGCCCACA
TGCACCAACTCAATCTTGTACACCGTGACCTGAAGACCGCTAACGTTCTC
CTTGACAGTAAGTGGGAGAACCTTATGGTCGCAGATCTTGACCTCGCTGT
TGATGTCAACGAACTTTTTTCGGCCGCCTCTCGCAACGGCGGCCGTGCAC
TTCACCGAGGGCCGTCGAATGGTAGACTGTCTCACATGGTCGGAACCCTG
GTTTATATGGCTCCCGAAGTTTTGCAAGGTCGGCCCCATTCATTTGCTGC
AGATGTTTACGCATTTGCTATTACCGTCAACGAGATGGCAGCTTGTGCCG
TTCCATACGTTGACAGAAAGATGCCCGTGCCCGAGTTGCACACCGTGTTG
GAGACACGTTTCAATGAAGTGAAGCTGCGTGGCGCAATAGTCAAGAACCA
TCTCAGACCCGTTCTAGCACACGGTGTTCCGGAAGAGTTCAGCAATCTTA
TTCAACAATGTTGGCATCCTGATCCTGAGCAACGCCCGAATTTCATTCAG
ATTGTTTCTGTCTTAGACTCCTTGCTTGGAAAAGGTTCTGCCTACCTGTC
GCAGTTCACCGGCTCCACTTTTGATACGGATGAACACCTTGCTGCCACTT
CGAAGAATTTGAAGATCGATGACACTAATCTTGTGTTGCACGAAATCAGG
GCAAGTGCTATCAAACCCCGAAAACCCATTTGGGAGCTGTGCGGTCGGAA
ACAACAAAACCCTGGATATGGTCGCATGGAGATAGAAAATGACCCAAAAC
GGTTTGAGGTCACGGCTTCGTTGTCATCCACCTGTGGAGAACGGGGTCCT
GATCGCATGGAAGATCGAAGTCTTGTCGAAACGAATTTGGCGAAACTCCC
AAACACTCACTTGTTCGCGGTTTTTGATGGTCATGGTGGCCAAAACTGTT
CCGATTTTGTGGCAAGAAACTTCCCTGGAGCATTGTTCCGTGCTTGGTCC
AACGAAGATGCCACACCGGAATCGGCTCTTATCCACGCATTTGAAGACGT
CGATTATGCGTTTTTGAAGGACTCTCCCGCTGAAGAAAATAGTGGCTGTA
CCGGTCTCGCATCTCTTATCATTGACTCTACTCTGTATGTGGCCAACGCT
GGAGATTGCCGATGTATCCTAAGCCGAAAAGACGGCACTGTACTCGCGCT
GAGCAAGGACCATGTGGCCACTGATCCAGCAGAGCAAGCCAGGGTGGTGG
CAAGGGGCGGATTTGTGTCTGCCACTGGTCGGGTGATGGGTTGCCTCATG
GTATCAAGATCACTGGGAGATCGAGCTTTCAAGAAGTATATCTCGGCCAC
ACCAGATATTGTCAAACAGCATCTGACTGCCGAAGACGATTTTATTGTTA
TGGCTAGCGACGGGTTGTGGGATGTCGTACCGGTCGACGAGGCAGCCGCA
CTCGTTCGATCTACAGTACGTGTCCCAGAACTAGCTGCCAAGAGACTGGC
ACTGAAAGCCGTTGAACTAGGTTCGGACGACAACATCTCCGTTATCGTCG
CGTTCTTCGGCGGAAATGTTAGTTTCAGTTATTTTCAGAGCTAG

Coding sequence (CDS) from alignment at tig00000045_pilon:507331..509274-

>Ggra6084.t1 ID=Ggra6084.t1|Name=Ggra6084.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1944bp|location=Sequence derived from alignment at tig00000045_pilon:507331..509274- (Gracilaria gracilis GNS1m male)
ATGGGTTCTACGGGCGATATTTTCTGGCGCGAATTAAGTCCACAGTTCTT
CTCCAACCTTCAACTCAAGGCGGAAGGTGCCGGAGCCTCCGTGTACCGTG
GCGTGCTTCCCTCCTTAAACCCCTCAGAAAAGCCATGCACCGTCGCGTTG
CGAAAGCCCAGAATCACCTCAATGTCAGCCCTCAGTCGCTTCGAAGCAGA
AATCCGTCTTCGTTCAAGGATATCCCACCCTAACCTACTCCCGCTTCTGG
GAGCCTGTACCACCCCCCCTAACTACTGCACCGTTTCACCATGGATGAAT
GGCGGCACCATGTTTGACGTCTTGCATGCCAAGTCTGTCAAGATGTCTTT
CGAACGCCTTATTCAGCTAACTTTGCAGTTCGCGAAGGCCATGGCCCACA
TGCACCAACTCAATCTTGTACACCGTGACCTGAAGACCGCTAACGTTCTC
CTTGACAGTAAGTGGGAGAACCTTATGGTCGCAGATCTTGACCTCGCTGT
TGATGTCAACGAACTTTTTTCGGCCGCCTCTCGCAACGGCGGCCGTGCAC
TTCACCGAGGGCCGTCGAATGGTAGACTGTCTCACATGGTCGGAACCCTG
GTTTATATGGCTCCCGAAGTTTTGCAAGGTCGGCCCCATTCATTTGCTGC
AGATGTTTACGCATTTGCTATTACCGTCAACGAGATGGCAGCTTGTGCCG
TTCCATACGTTGACAGAAAGATGCCCGTGCCCGAGTTGCACACCGTGTTG
GAGACACGTTTCAATGAAGTGAAGCTGCGTGGCGCAATAGTCAAGAACCA
TCTCAGACCCGTTCTAGCACACGGTGTTCCGGAAGAGTTCAGCAATCTTA
TTCAACAATGTTGGCATCCTGATCCTGAGCAACGCCCGAATTTCATTCAG
ATTGTTTCTGTCTTAGACTCCTTGCTTGGAAAAGGTTCTGCCTACCTGTC
GCAGTTCACCGGCTCCACTTTTGATACGGATGAACACCTTGCTGCCACTT
CGAAGAATTTGAAGATCGATGACACTAATCTTGTGTTGCACGAAATCAGG
GCAAGTGCTATCAAACCCCGAAAACCCATTTGGGAGCTGTGCGGTCGGAA
ACAACAAAACCCTGGATATGGTCGCATGGAGATAGAAAATGACCCAAAAC
GGTTTGAGGTCACGGCTTCGTTGTCATCCACCTGTGGAGAACGGGGTCCT
GATCGCATGGAAGATCGAAGTCTTGTCGAAACGAATTTGGCGAAACTCCC
AAACACTCACTTGTTCGCGGTTTTTGATGGTCATGGTGGCCAAAACTGTT
CCGATTTTGTGGCAAGAAACTTCCCTGGAGCATTGTTCCGTGCTTGGTCC
AACGAAGATGCCACACCGGAATCGGCTCTTATCCACGCATTTGAAGACGT
CGATTATGCGTTTTTGAAGGACTCTCCCGCTGAAGAAAATAGTGGCTGTA
CCGGTCTCGCATCTCTTATCATTGACTCTACTCTGTATGTGGCCAACGCT
GGAGATTGCCGATGTATCCTAAGCCGAAAAGACGGCACTGTACTCGCGCT
GAGCAAGGACCATGTGGCCACTGATCCAGCAGAGCAAGCCAGGGTGGTGG
CAAGGGGCGGATTTGTGTCTGCCACTGGTCGGGTGATGGGTTGCCTCATG
GTATCAAGATCACTGGGAGATCGAGCTTTCAAGAAGTATATCTCGGCCAC
ACCAGATATTGTCAAACAGCATCTGACTGCCGAAGACGATTTTATTGTTA
TGGCTAGCGACGGGTTGTGGGATGTCGTACCGGTCGACGAGGCAGCCGCA
CTCGTTCGATCTACAGTACGTGTCCCAGAACTAGCTGCCAAGAGACTGGC
ACTGAAAGCCGTTGAACTAGGTTCGGACGACAACATCTCCGTTATCGTCG
CGTTCTTCGGCGGAAATGTTAGTTTCAGTTATTTTCAGAGCTAG