Ggra6093.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6093.t1
Unique Name	Ggra6093.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	633

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:530832..532730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4113.PGSC0003DMT400017657
PFAMs	Dor1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20295
Evalue	2.2e-89
EggNOG OGs	KOG2069@1\|root,KOG2069@2759\|Eukaryota,37SHY@33090\|Viridiplantae,3GFRB@35493\|Streptophyta,44BCX@71274\|asterids
Description	Conserved oligomeric Golgi complex
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6093	Ggra6093	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 530832..532730 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6093.t1.start1	Ggra6093.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 530832..530834 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6093.t1.CDS1	Ggra6093.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 530832..532730 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6093.t1.exon1	Ggra6093.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 530832..532730 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6093.t1.stop1	Ggra6093.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 532728..532730 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6093.t1	Ggra6093.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 530832..532730 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:530832..532730+
coding sequence from alignment at tig00000045_pilon:530832..532730+

mRNA sequence

>Ggra6093.t1 ID=Ggra6093.t1|Name=Ggra6093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp
MTAEVSGVQEKPPDSNNASVLLDPEADAEEALKAICKFVLNDLPADAPSC
EKWHGLQAYIEELCGYSIERLSREPDDLGSACIRLKNELEDVACGNYRAL
IESFECAGAVRDGVADVRSRLDELINSLPKLADATSQFSASVTEKQRERE
TRLRAITEHRAVADIVEMPRLMTTLVGAELYDEALELRECAVKLYAMHGD
EILIRHVCEEMDVLTQQMVLQLLVLLRNPIQLPMCLRIVGFLRRLDVFSE
YRLRMLFLHCRGEWMRNGIETSTANSRQAELVTLSDNMRSMMFEIITQYR
AVFNDDTEEGSEKLESDSSAISGRSFSHSSSILFDWTSSSVTEYLNKLRN
GIKDVKDGAALNTILQQAMYCGQSLGRVGADFRAALPPMFEDSVMQIYCS
HLNAALRQFEMMIEDNRWAPVGSSALRKERGQLGTDSKYNGESQTGVDIS
TNNEYDPPLAILDSPPLAVFMNGILAAFNDLRLCAPLSLGPQLGKVLHET
LISSGEFMTAIGGPGGAFLKRSDRPHYVSMAISLRDLCVPHVSQCLEYCM
NSSALISVGEVQDALNSMFGDTLPKDGTPDSNELESEDHSQIHQIANTTG
DGNYHQKVSEENGHVADYEEGDKPETEENLIL*

spliced messenger RNA

>Ggra6093.t1 ID=Ggra6093.t1|Name=Ggra6093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00000045_pilon:530832..532730+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCTGAGGTTTCGGGTGTGCAAGAGAAACCTCCCGATTCCAATAA
TGCCTCTGTGCTTCTGGACCCCGAAGCAGATGCTGAAGAGGCTCTGAAAG
CAATCTGCAAGTTTGTTCTGAACGATTTGCCTGCTGATGCGCCATCATGC
GAGAAATGGCATGGACTTCAAGCCTACATTGAAGAACTCTGCGGTTATAG
TATCGAGAGGTTGTCGCGTGAGCCAGATGACCTTGGTTCTGCATGCATTC
GATTGAAGAACGAGCTTGAAGACGTTGCCTGCGGGAACTATCGCGCACTA
ATTGAAAGCTTTGAATGTGCAGGTGCAGTCCGTGATGGCGTTGCAGATGT
GCGCTCCAGACTCGATGAGCTGATCAATTCCTTACCGAAACTGGCCGACG
CAACTAGTCAGTTCTCCGCGAGCGTCACGGAAAAGCAACGTGAAAGGGAA
ACCAGATTGCGAGCCATAACTGAACATCGAGCTGTGGCTGATATAGTGGA
AATGCCAAGACTGATGACTACTTTGGTGGGTGCAGAGTTGTATGATGAGG
CCTTAGAATTGCGCGAATGTGCAGTGAAGCTGTACGCCATGCACGGTGAT
GAAATTCTCATTCGTCACGTATGTGAAGAAATGGATGTTCTCACTCAACA
AATGGTCCTTCAACTACTTGTACTCTTACGTAATCCCATACAGCTGCCGA
TGTGCTTGCGAATCGTCGGGTTTCTCCGTCGTCTCGATGTATTTTCTGAG
TACCGATTACGAATGCTGTTTTTGCACTGCCGGGGCGAATGGATGAGAAA
CGGAATAGAAACTTCTACGGCAAATTCTAGACAAGCAGAGCTGGTTACCC
TAAGCGACAACATGAGGTCTATGATGTTTGAAATCATCACCCAGTATCGA
GCGGTCTTTAACGATGATACTGAAGAAGGATCAGAGAAGCTTGAAAGCGA
CTCATCTGCGATATCCGGGAGATCATTCTCACACTCATCGTCGATTCTAT
TCGACTGGACATCTTCGTCGGTCACAGAGTATTTAAACAAGCTTCGCAAT
GGCATAAAAGATGTTAAAGATGGTGCTGCTTTGAACACAATTCTTCAGCA
GGCGATGTACTGTGGCCAATCCCTTGGTCGGGTTGGAGCAGATTTTCGAG
CAGCGCTGCCACCAATGTTCGAAGATTCGGTGATGCAAATCTACTGCTCT
CACCTGAATGCTGCCCTACGACAGTTCGAGATGATGATTGAAGACAATCG
TTGGGCTCCTGTAGGATCGTCAGCATTGCGGAAGGAGAGGGGACAACTTG
GGACTGATTCCAAATACAATGGAGAATCTCAAACAGGTGTTGATATTTCG
ACAAACAATGAATATGATCCGCCTCTGGCAATCCTTGACAGTCCACCGCT
TGCCGTGTTCATGAATGGCATCCTTGCTGCTTTTAATGACTTAAGACTGT
GCGCTCCGTTATCTCTCGGACCACAGCTTGGAAAGGTCTTGCACGAAACG
TTAATTAGTTCTGGGGAGTTCATGACAGCTATTGGCGGTCCAGGTGGTGC
ATTCTTGAAGAGGTCTGATAGACCTCACTACGTGTCCATGGCAATTTCTC
TGCGGGACTTGTGCGTGCCCCATGTCTCGCAGTGTCTAGAGTACTGTATG
AACTCATCTGCTTTAATAAGTGTTGGCGAAGTGCAGGATGCGTTGAACTC
GATGTTTGGGGACACACTGCCAAAGGACGGGACACCAGATAGCAATGAGC
TCGAAAGTGAGGATCACAGTCAGATTCATCAAATAGCAAACACGACTGGC
GATGGAAATTATCACCAGAAAGTATCTGAAGAAAACGGACATGTTGCCGA
CTACGAAGAAGGTGATAAGCCTGAAACAGAAGAGAATTTGATTCTGTGA

protein sequence of Ggra6093.t1

>Ggra6093.t1 ID=Ggra6093.t1|Name=Ggra6093.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=633bp
MTAEVSGVQEKPPDSNNASVLLDPEADAEEALKAICKFVLNDLPADAPSC
EKWHGLQAYIEELCGYSIERLSREPDDLGSACIRLKNELEDVACGNYRAL
IESFECAGAVRDGVADVRSRLDELINSLPKLADATSQFSASVTEKQRERE
TRLRAITEHRAVADIVEMPRLMTTLVGAELYDEALELRECAVKLYAMHGD
EILIRHVCEEMDVLTQQMVLQLLVLLRNPIQLPMCLRIVGFLRRLDVFSE
YRLRMLFLHCRGEWMRNGIETSTANSRQAELVTLSDNMRSMMFEIITQYR
AVFNDDTEEGSEKLESDSSAISGRSFSHSSSILFDWTSSSVTEYLNKLRN
GIKDVKDGAALNTILQQAMYCGQSLGRVGADFRAALPPMFEDSVMQIYCS
HLNAALRQFEMMIEDNRWAPVGSSALRKERGQLGTDSKYNGESQTGVDIS
TNNEYDPPLAILDSPPLAVFMNGILAAFNDLRLCAPLSLGPQLGKVLHET
LISSGEFMTAIGGPGGAFLKRSDRPHYVSMAISLRDLCVPHVSQCLEYCM
NSSALISVGEVQDALNSMFGDTLPKDGTPDSNELESEDHSQIHQIANTTG
DGNYHQKVSEENGHVADYEEGDKPETEENLIL*

mRNA from alignment at tig00000045_pilon:530832..532730+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6093.t1 ID=Ggra6093.t1|Name=Ggra6093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00000045_pilon:530832..532730+ (Gracilaria gracilis GNS1m male)
ATGACAGCTGAGGTTTCGGGTGTGCAAGAGAAACCTCCCGATTCCAATAA
TGCCTCTGTGCTTCTGGACCCCGAAGCAGATGCTGAAGAGGCTCTGAAAG
CAATCTGCAAGTTTGTTCTGAACGATTTGCCTGCTGATGCGCCATCATGC
GAGAAATGGCATGGACTTCAAGCCTACATTGAAGAACTCTGCGGTTATAG
TATCGAGAGGTTGTCGCGTGAGCCAGATGACCTTGGTTCTGCATGCATTC
GATTGAAGAACGAGCTTGAAGACGTTGCCTGCGGGAACTATCGCGCACTA
ATTGAAAGCTTTGAATGTGCAGGTGCAGTCCGTGATGGCGTTGCAGATGT
GCGCTCCAGACTCGATGAGCTGATCAATTCCTTACCGAAACTGGCCGACG
CAACTAGTCAGTTCTCCGCGAGCGTCACGGAAAAGCAACGTGAAAGGGAA
ACCAGATTGCGAGCCATAACTGAACATCGAGCTGTGGCTGATATAGTGGA
AATGCCAAGACTGATGACTACTTTGGTGGGTGCAGAGTTGTATGATGAGG
CCTTAGAATTGCGCGAATGTGCAGTGAAGCTGTACGCCATGCACGGTGAT
GAAATTCTCATTCGTCACGTATGTGAAGAAATGGATGTTCTCACTCAACA
AATGGTCCTTCAACTACTTGTACTCTTACGTAATCCCATACAGCTGCCGA
TGTGCTTGCGAATCGTCGGGTTTCTCCGTCGTCTCGATGTATTTTCTGAG
TACCGATTACGAATGCTGTTTTTGCACTGCCGGGGCGAATGGATGAGAAA
CGGAATAGAAACTTCTACGGCAAATTCTAGACAAGCAGAGCTGGTTACCC
TAAGCGACAACATGAGGTCTATGATGTTTGAAATCATCACCCAGTATCGA
GCGGTCTTTAACGATGATACTGAAGAAGGATCAGAGAAGCTTGAAAGCGA
CTCATCTGCGATATCCGGGAGATCATTCTCACACTCATCGTCGATTCTAT
TCGACTGGACATCTTCGTCGGTCACAGAGTATTTAAACAAGCTTCGCAAT
GGCATAAAAGATGTTAAAGATGGTGCTGCTTTGAACACAATTCTTCAGCA
GGCGATGTACTGTGGCCAATCCCTTGGTCGGGTTGGAGCAGATTTTCGAG
CAGCGCTGCCACCAATGTTCGAAGATTCGGTGATGCAAATCTACTGCTCT
CACCTGAATGCTGCCCTACGACAGTTCGAGATGATGATTGAAGACAATCG
TTGGGCTCCTGTAGGATCGTCAGCATTGCGGAAGGAGAGGGGACAACTTG
GGACTGATTCCAAATACAATGGAGAATCTCAAACAGGTGTTGATATTTCG
ACAAACAATGAATATGATCCGCCTCTGGCAATCCTTGACAGTCCACCGCT
TGCCGTGTTCATGAATGGCATCCTTGCTGCTTTTAATGACTTAAGACTGT
GCGCTCCGTTATCTCTCGGACCACAGCTTGGAAAGGTCTTGCACGAAACG
TTAATTAGTTCTGGGGAGTTCATGACAGCTATTGGCGGTCCAGGTGGTGC
ATTCTTGAAGAGGTCTGATAGACCTCACTACGTGTCCATGGCAATTTCTC
TGCGGGACTTGTGCGTGCCCCATGTCTCGCAGTGTCTAGAGTACTGTATG
AACTCATCTGCTTTAATAAGTGTTGGCGAAGTGCAGGATGCGTTGAACTC
GATGTTTGGGGACACACTGCCAAAGGACGGGACACCAGATAGCAATGAGC
TCGAAAGTGAGGATCACAGTCAGATTCATCAAATAGCAAACACGACTGGC
GATGGAAATTATCACCAGAAAGTATCTGAAGAAAACGGACATGTTGCCGA
CTACGAAGAAGGTGATAAGCCTGAAACAGAAGAGAATTTGATTCTGTGA

Coding sequence (CDS) from alignment at tig00000045_pilon:530832..532730+

>Ggra6093.t1 ID=Ggra6093.t1|Name=Ggra6093.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1899bp|location=Sequence derived from alignment at tig00000045_pilon:530832..532730+ (Gracilaria gracilis GNS1m male)
ATGACAGCTGAGGTTTCGGGTGTGCAAGAGAAACCTCCCGATTCCAATAA
TGCCTCTGTGCTTCTGGACCCCGAAGCAGATGCTGAAGAGGCTCTGAAAG
CAATCTGCAAGTTTGTTCTGAACGATTTGCCTGCTGATGCGCCATCATGC
GAGAAATGGCATGGACTTCAAGCCTACATTGAAGAACTCTGCGGTTATAG
TATCGAGAGGTTGTCGCGTGAGCCAGATGACCTTGGTTCTGCATGCATTC
GATTGAAGAACGAGCTTGAAGACGTTGCCTGCGGGAACTATCGCGCACTA
ATTGAAAGCTTTGAATGTGCAGGTGCAGTCCGTGATGGCGTTGCAGATGT
GCGCTCCAGACTCGATGAGCTGATCAATTCCTTACCGAAACTGGCCGACG
CAACTAGTCAGTTCTCCGCGAGCGTCACGGAAAAGCAACGTGAAAGGGAA
ACCAGATTGCGAGCCATAACTGAACATCGAGCTGTGGCTGATATAGTGGA
AATGCCAAGACTGATGACTACTTTGGTGGGTGCAGAGTTGTATGATGAGG
CCTTAGAATTGCGCGAATGTGCAGTGAAGCTGTACGCCATGCACGGTGAT
GAAATTCTCATTCGTCACGTATGTGAAGAAATGGATGTTCTCACTCAACA
AATGGTCCTTCAACTACTTGTACTCTTACGTAATCCCATACAGCTGCCGA
TGTGCTTGCGAATCGTCGGGTTTCTCCGTCGTCTCGATGTATTTTCTGAG
TACCGATTACGAATGCTGTTTTTGCACTGCCGGGGCGAATGGATGAGAAA
CGGAATAGAAACTTCTACGGCAAATTCTAGACAAGCAGAGCTGGTTACCC
TAAGCGACAACATGAGGTCTATGATGTTTGAAATCATCACCCAGTATCGA
GCGGTCTTTAACGATGATACTGAAGAAGGATCAGAGAAGCTTGAAAGCGA
CTCATCTGCGATATCCGGGAGATCATTCTCACACTCATCGTCGATTCTAT
TCGACTGGACATCTTCGTCGGTCACAGAGTATTTAAACAAGCTTCGCAAT
GGCATAAAAGATGTTAAAGATGGTGCTGCTTTGAACACAATTCTTCAGCA
GGCGATGTACTGTGGCCAATCCCTTGGTCGGGTTGGAGCAGATTTTCGAG
CAGCGCTGCCACCAATGTTCGAAGATTCGGTGATGCAAATCTACTGCTCT
CACCTGAATGCTGCCCTACGACAGTTCGAGATGATGATTGAAGACAATCG
TTGGGCTCCTGTAGGATCGTCAGCATTGCGGAAGGAGAGGGGACAACTTG
GGACTGATTCCAAATACAATGGAGAATCTCAAACAGGTGTTGATATTTCG
ACAAACAATGAATATGATCCGCCTCTGGCAATCCTTGACAGTCCACCGCT
TGCCGTGTTCATGAATGGCATCCTTGCTGCTTTTAATGACTTAAGACTGT
GCGCTCCGTTATCTCTCGGACCACAGCTTGGAAAGGTCTTGCACGAAACG
TTAATTAGTTCTGGGGAGTTCATGACAGCTATTGGCGGTCCAGGTGGTGC
ATTCTTGAAGAGGTCTGATAGACCTCACTACGTGTCCATGGCAATTTCTC
TGCGGGACTTGTGCGTGCCCCATGTCTCGCAGTGTCTAGAGTACTGTATG
AACTCATCTGCTTTAATAAGTGTTGGCGAAGTGCAGGATGCGTTGAACTC
GATGTTTGGGGACACACTGCCAAAGGACGGGACACCAGATAGCAATGAGC
TCGAAAGTGAGGATCACAGTCAGATTCATCAAATAGCAAACACGACTGGC
GATGGAAATTATCACCAGAAAGTATCTGAAGAAAACGGACATGTTGCCGA
CTACGAAGAAGGTGATAAGCCTGAAACAGAAGAGAATTTGATTCTGTGA