Ggra6200.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6200.t1
Unique NameGgra6200.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:1020468..1021714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_08509T0
Preferred nameGRX3
PFAMsGlutaredoxin,Thioredoxin
Max annot lvl4751|Fungi
GOsGO:0001085,GO:0001102,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010604,GO:0010638,GO:0015036,GO:0015037,GO:0015038,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030029,GO:0030036,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031163,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0033613,GO:0034599,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044572,GO:0045185,GO:0046916,GO:0048037,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051220,GO:0051235,GO:0051246,GO:0051247,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0090312,GO:0098771,GO:1901564,GO:1902275,GO:1903025,GO:1903026,GO:1905269,GO:2000677,GO:2000678,GO:2001252
Evalue2.03e-79
EggNOG OGsCOG0278@1|root,KOG0911@2759|Eukaryota,38BF9@33154|Opisthokonta,3NXX9@4751|Fungi
DescriptionMonothiol
COG categoryO
BiGG ReactioniMM904.YER174C
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6200Ggra6200Gracilaria gracilis GNS1m malegenetig00000045_pilon 1020468..1021714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6200.t1Ggra6200.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 1020468..1021714 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6200.t1.stop1Ggra6200.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 1020468..1020470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6200.t1.CDS1Ggra6200.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 1020468..1021565 -
Ggra6200.t1.CDS2Ggra6200.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 1021649..1021714 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6200.t1.exon1Ggra6200.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 1020468..1021565 -
Ggra6200.t1.exon2Ggra6200.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 1021649..1021714 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6200.t1.intron1Ggra6200.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 1021566..1021648 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6200.t1.start1Ggra6200.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 1021712..1021714 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6200.t1 ID=Ggra6200.t1|Name=Ggra6200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MDQRNSGVHAISTDHELDSLISSGVRMVVNCWAPWAAPCEQMNAVFQTVE
AENSKRYANMTVDEHVPVLFTSMEPEKMPTIMKRYDVSTVPTFLFFAGKR
LVRRCSGADAVLLSKNVRWVTESSNTTLLNAACDVVSTLGEVTLVMKGTA
DEPRCGFSRQAVEVLRTAGVQFKTFNILEDAEVRRVMKERFNWPTFPMVF
AGGKLIGGIDILRELADEGQLVDELMSGGQEEGAEDAKDAKVVKQAERKR
DSESATGAEVSQKTQSANGNEAAVRQQESEEADGLSVEARERLTGLVNRG
EVMLFMKGSPSMPRCGFSRKITEMLREQGVQFEHFDILTDNEVRQGLKKL
SHWPTFPQLYSKGKLIGGLDIVKELVESGELKKELTA*
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spliced messenger RNA

>Ggra6200.t1 ID=Ggra6200.t1|Name=Ggra6200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000045_pilon:1020468..1021714- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAGCGCAACAGCGGCGTGCATGCCATTTCCACAGACCATGAGCT
TGACTCTCTCATCTCGAGTGGCGTTCGGATGGTGGTGAATTGTTGGGCGC
CATGGGCTGCGCCATGCGAGCAAATGAACGCGGTGTTTCAAACTGTGGAA
GCGGAAAATAGCAAGCGGTATGCAAACATGACGGTGGATGAACACGTGCC
GGTGCTGTTCACGTCAATGGAACCCGAGAAAATGCCTACAATTATGAAGC
GATACGACGTATCTACGGTGCCTACATTTCTCTTTTTTGCTGGTAAGCGT
CTGGTGCGACGTTGTTCAGGAGCTGATGCAGTGCTGCTGTCGAAGAACGT
TCGCTGGGTGACGGAAAGCTCGAATACAACGCTGCTGAATGCGGCTTGCG
ACGTGGTGAGCACGCTGGGTGAAGTGACGCTGGTGATGAAGGGAACGGCT
GACGAGCCGAGATGCGGGTTCAGCAGACAGGCGGTGGAGGTGCTTCGCAC
GGCAGGGGTGCAGTTTAAGACGTTCAACATTCTGGAGGACGCGGAGGTGC
GAAGGGTTATGAAGGAACGGTTTAATTGGCCTACGTTTCCGATGGTGTTT
GCTGGAGGAAAGCTGATTGGCGGTATCGATATCTTGCGCGAATTGGCGGA
CGAGGGACAACTTGTAGACGAGCTTATGAGCGGCGGGCAGGAGGAAGGGG
CGGAGGACGCGAAGGACGCGAAGGTCGTGAAGCAGGCTGAGAGAAAGAGG
GACAGTGAGAGCGCCACTGGAGCAGAGGTTTCGCAGAAAACACAGAGCGC
CAACGGGAACGAAGCAGCGGTGAGGCAGCAGGAAAGCGAGGAGGCGGACG
GGTTGTCGGTGGAAGCTCGCGAGCGACTGACGGGATTGGTGAACCGCGGA
GAGGTGATGCTGTTCATGAAGGGCAGTCCGTCAATGCCTCGGTGTGGATT
CTCCAGGAAGATTACGGAAATGCTTCGCGAGCAAGGGGTGCAGTTTGAAC
ACTTTGACATCTTGACGGACAACGAAGTGCGTCAGGGGCTGAAGAAACTA
TCGCATTGGCCGACGTTCCCGCAGCTGTACTCGAAGGGCAAGTTGATTGG
CGGGTTGGACATTGTGAAGGAACTGGTGGAGAGCGGAGAGCTGAAGAAGG
AACTGACAGCGTGA
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protein sequence of Ggra6200.t1

>Ggra6200.t1 ID=Ggra6200.t1|Name=Ggra6200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MDQRNSGVHAISTDHELDSLISSGVRMVVNCWAPWAAPCEQMNAVFQTVE
AENSKRYANMTVDEHVPVLFTSMEPEKMPTIMKRYDVSTVPTFLFFAGKR
LVRRCSGADAVLLSKNVRWVTESSNTTLLNAACDVVSTLGEVTLVMKGTA
DEPRCGFSRQAVEVLRTAGVQFKTFNILEDAEVRRVMKERFNWPTFPMVF
AGGKLIGGIDILRELADEGQLVDELMSGGQEEGAEDAKDAKVVKQAERKR
DSESATGAEVSQKTQSANGNEAAVRQQESEEADGLSVEARERLTGLVNRG
EVMLFMKGSPSMPRCGFSRKITEMLREQGVQFEHFDILTDNEVRQGLKKL
SHWPTFPQLYSKGKLIGGLDIVKELVESGELKKELTA*
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mRNA from alignment at tig00000045_pilon:1020468..1021714-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6200.t1 ID=Ggra6200.t1|Name=Ggra6200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1247bp|location=Sequence derived from alignment at tig00000045_pilon:1020468..1021714- (Gracilaria gracilis GNS1m male)
ATGGATCAGCGCAACAGCGGCGTGCATGCCATTTCCACAGACCATGAGCT
TGACTCTCTCATCTCGGTAAGTTCAAGCGCTCCTCCCCTTCACGCTGACC
GCAAGCCGTATGATGGACTAACGTGTGCGTGGGTGCGGCGTTTGAGAAGA
GTGGCGTTCGGATGGTGGTGAATTGTTGGGCGCCATGGGCTGCGCCATGC
GAGCAAATGAACGCGGTGTTTCAAACTGTGGAAGCGGAAAATAGCAAGCG
GTATGCAAACATGACGGTGGATGAACACGTGCCGGTGCTGTTCACGTCAA
TGGAACCCGAGAAAATGCCTACAATTATGAAGCGATACGACGTATCTACG
GTGCCTACATTTCTCTTTTTTGCTGGTAAGCGTCTGGTGCGACGTTGTTC
AGGAGCTGATGCAGTGCTGCTGTCGAAGAACGTTCGCTGGGTGACGGAAA
GCTCGAATACAACGCTGCTGAATGCGGCTTGCGACGTGGTGAGCACGCTG
GGTGAAGTGACGCTGGTGATGAAGGGAACGGCTGACGAGCCGAGATGCGG
GTTCAGCAGACAGGCGGTGGAGGTGCTTCGCACGGCAGGGGTGCAGTTTA
AGACGTTCAACATTCTGGAGGACGCGGAGGTGCGAAGGGTTATGAAGGAA
CGGTTTAATTGGCCTACGTTTCCGATGGTGTTTGCTGGAGGAAAGCTGAT
TGGCGGTATCGATATCTTGCGCGAATTGGCGGACGAGGGACAACTTGTAG
ACGAGCTTATGAGCGGCGGGCAGGAGGAAGGGGCGGAGGACGCGAAGGAC
GCGAAGGTCGTGAAGCAGGCTGAGAGAAAGAGGGACAGTGAGAGCGCCAC
TGGAGCAGAGGTTTCGCAGAAAACACAGAGCGCCAACGGGAACGAAGCAG
CGGTGAGGCAGCAGGAAAGCGAGGAGGCGGACGGGTTGTCGGTGGAAGCT
CGCGAGCGACTGACGGGATTGGTGAACCGCGGAGAGGTGATGCTGTTCAT
GAAGGGCAGTCCGTCAATGCCTCGGTGTGGATTCTCCAGGAAGATTACGG
AAATGCTTCGCGAGCAAGGGGTGCAGTTTGAACACTTTGACATCTTGACG
GACAACGAAGTGCGTCAGGGGCTGAAGAAACTATCGCATTGGCCGACGTT
CCCGCAGCTGTACTCGAAGGGCAAGTTGATTGGCGGGTTGGACATTGTGA
AGGAACTGGTGGAGAGCGGAGAGCTGAAGAAGGAACTGACAGCGTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:1020468..1021714-

>Ggra6200.t1 ID=Ggra6200.t1|Name=Ggra6200.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000045_pilon:1020468..1021714- (Gracilaria gracilis GNS1m male)
ATGGATCAGCGCAACAGCGGCGTGCATGCCATTTCCACAGACCATGAGCT
TGACTCTCTCATCTCGAGTGGCGTTCGGATGGTGGTGAATTGTTGGGCGC
CATGGGCTGCGCCATGCGAGCAAATGAACGCGGTGTTTCAAACTGTGGAA
GCGGAAAATAGCAAGCGGTATGCAAACATGACGGTGGATGAACACGTGCC
GGTGCTGTTCACGTCAATGGAACCCGAGAAAATGCCTACAATTATGAAGC
GATACGACGTATCTACGGTGCCTACATTTCTCTTTTTTGCTGGTAAGCGT
CTGGTGCGACGTTGTTCAGGAGCTGATGCAGTGCTGCTGTCGAAGAACGT
TCGCTGGGTGACGGAAAGCTCGAATACAACGCTGCTGAATGCGGCTTGCG
ACGTGGTGAGCACGCTGGGTGAAGTGACGCTGGTGATGAAGGGAACGGCT
GACGAGCCGAGATGCGGGTTCAGCAGACAGGCGGTGGAGGTGCTTCGCAC
GGCAGGGGTGCAGTTTAAGACGTTCAACATTCTGGAGGACGCGGAGGTGC
GAAGGGTTATGAAGGAACGGTTTAATTGGCCTACGTTTCCGATGGTGTTT
GCTGGAGGAAAGCTGATTGGCGGTATCGATATCTTGCGCGAATTGGCGGA
CGAGGGACAACTTGTAGACGAGCTTATGAGCGGCGGGCAGGAGGAAGGGG
CGGAGGACGCGAAGGACGCGAAGGTCGTGAAGCAGGCTGAGAGAAAGAGG
GACAGTGAGAGCGCCACTGGAGCAGAGGTTTCGCAGAAAACACAGAGCGC
CAACGGGAACGAAGCAGCGGTGAGGCAGCAGGAAAGCGAGGAGGCGGACG
GGTTGTCGGTGGAAGCTCGCGAGCGACTGACGGGATTGGTGAACCGCGGA
GAGGTGATGCTGTTCATGAAGGGCAGTCCGTCAATGCCTCGGTGTGGATT
CTCCAGGAAGATTACGGAAATGCTTCGCGAGCAAGGGGTGCAGTTTGAAC
ACTTTGACATCTTGACGGACAACGAAGTGCGTCAGGGGCTGAAGAAACTA
TCGCATTGGCCGACGTTCCCGCAGCTGTACTCGAAGGGCAAGTTGATTGG
CGGGTTGGACATTGTGAAGGAACTGGTGGAGAGCGGAGAGCTGAAGAAGG
AACTGACAGCGTGA
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