Ggra6191.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6191.t1
Unique NameGgra6191.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Homology
BLAST of Ggra6191.t1 vs. uniprot
Match: A0A2V3IZC5 (Copine-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZC5_9FLOR)

HSP 1 Score: 560 bits (1443), Expect = 6.290e-200
Identity = 271/333 (81.38%), Postives = 309/333 (92.79%), Query Frame = 0
Query:    1 MGLDAQFSHDSLLDEQQLSSIRLQYPKSSRLLLGTTANLQQPAFLKALETRYPLEVSVECRQLNAPSRLFPFRQVRPFAVFLYSDGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQCALEDIIAEPLLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLDMASGTKKNHRVFYVLSRQLQSGDYTPVYRSEVLTREQKRFQVMTRDLTAVTAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNTERHHRMLWWPSALGDGDNVIEVGRIVLVESVVSSMLLQFRLRVTQ 333
            MGL+A  SHDS LD+ +L+SIRLQYPKSSRL+LGTTANLQQPAFLKALETRYPLE+S+ECR+L+ P RL PFRQ RPFAVFLYS+ PNAPWELIGRTETVLYDEY RFVTKLKVCCATERDRQKILRVE+FDRR+KSEHIE QTF+GAAQC LEDIIAEPLLRKEM + ESRVM+PG++I+ ADAIRA+++C RL+LNLDM S TK++HRVFYVLSRQLQSGDYTPVYRSEVL+REQKRFQ MTRDLTAVTAGVDDKLLRLELYQFSNRG+H+RLGF++TSI+KL++ ERH R+LWWP+A GDGDNVIEVGR+VL+E+VVS  +LQFRLRVTQ
Sbjct:    1 MGLEAAMSHDSFLDDDELTSIRLQYPKSSRLMLGTTANLQQPAFLKALETRYPLELSLECRELHVPLRLLPFRQARPFAVFLYSEAPNAPWELIGRTETVLYDEYIRFVTKLKVCCATERDRQKILRVELFDRRSKSEHIEDQTFVGAAQCTLEDIIAEPLLRKEMALGESRVMQPGKIIVSADAIRANEKCARLILNLDMGSSTKRHHRVFYVLSRQLQSGDYTPVYRSEVLSREQKRFQPMTRDLTAVTAGVDDKLLRLELYQFSNRGSHIRLGFMQTSIDKLRSCERHSRLLWWPNAAGDGDNVIEVGRVVLIETVVSEEVLQFRLRVTQ 333          
BLAST of Ggra6191.t1 vs. uniprot
Match: A0A7S0ZGD5 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGD5_9RHOD)

HSP 1 Score: 116 bits (291), Expect = 2.590e-26
Identity = 76/247 (30.77%), Postives = 131/247 (53.04%), Query Frame = 0
Query:   53 PLEVSVECRQLNAPSRLFPFRQVRPFAV-FLYSDGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKS-EHIEHQTFIGAAQCALEDIIAEP--LLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLDMASGTKKNHRVFYVLSRQLQSGDYTPVYRSEVLTREQK-RFQVMTRDLTAVTAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNTERHHRM 294
            PLE+++E   L A + LF  ++  PFAV +L    PNA WE  G TE +     P+FV   ++ C+++ +R++ LRVE ++R +K  + +  Q FIG+A C L +I++ P   L+ E+K       + G   +  D +   D    + L +   + + +  + ++V+SR L+ G++TPVY SE   +     ++ +T     +TAG DD+  R+E Y  S  G H  +G   T  E LK  +  +++
Sbjct:   74 PLELNLEGNNL-ANAGLF--KKKAPFAVVYLKGVAPNAEWERFGDTEAIQNVLNPKFVASFRMACSSDEEREQSLRVEFYNRAHKDKDDLSKQDFIGSATCKLGEILSAPGQTLQLELKHPSKSNFR-GNATVFIDTLLTRDPPFEIALCVKSEALSTEKKKSYFVISRALRKGNWTPVYMSETAKQGASISWEPITLAQERLTAGADDRAFRIEFYTKSMLGQHEYIGSFSTKYESLKGMKAGNKL 316          
BLAST of Ggra6191.t1 vs. uniprot
Match: A0A2V3IHX9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHX9_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 2.590e-22
Identity = 69/264 (26.14%), Postives = 124/264 (46.97%), Query Frame = 0
Query:   72 FRQVRPFAVFLYSDGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQCALEDIIAEPLLRKEMKMSESRVMKPG--RVIICADAIRASDRCTRLVLNLDMASGTKKNHRVFYVLSRQLQSGDYTPVYRSEVLTREQKR-FQVMTRDLTAVTAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNTERHHRMLWWPSALGDGDNVIEVGRIVLVESVVSSMLLQFRLRVT 332
            F     FAV          WE+ G++E V    + + V K ++  ATE DR + + +  F+    S  +     +G    +  ++I    L  + ++   R    G  +V++  D I+   +   + +   + S   + +R+F+VLSR L  G ++P+Y+SEV TR+    F  +  +      G + K  RLEL+++   G    LGF++TS+EKLK       + WWP+     D+ I   ++ LV ++ S    +F+  +T
Sbjct:  124 FSPAECFAVLFSEGAVPGTWEVTGKSEAVRCSPHIKLVKKFRLRAATELDRSEKIVIAFFNSSTPSHLLSPSRALGYEVFSASELIEAKRLTLKRRLRNDRWNFWGNAQVVLSLDVIKHVSKKEMITIEFGLTSDAPRRNRMFFVLSRGLPQGTWSPIYKSEVRTRDDMASFNAVCLECLDFHGGDESKNFRLELHRWYKNGRTRPLGFIQTSLEKLKTMHASTYLYWWPA-----DDGITSAKVTLVRALASPSECRFQFSLT 382          
BLAST of Ggra6191.t1 vs. uniprot
Match: A0A7T8KKF0 (Copine VIII n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8KKF0_CALRO)

HSP 1 Score: 61.2 bits (147), Expect = 9.140e-7
Identity = 54/243 (22.22%), Postives = 113/243 (46.50%), Query Frame = 0
Query:   54 LEVSVECRQLNAPSRLFPFRQVRPFAVFLYSDGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQCALEDIIAEPLLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLDMASGTKKN----HRVFYVLSRQLQSGDYTPVYRSEVLTREQ----KRFQVMTRDLTAVTAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNT 288
            +E++++C+++     +    +  P  +     G N  +E +GRTE +  +  P F+ K+ +    E +RQ+ LR E++D     + +E Q  +G    +L  I+    +  +++       K   +I+  +A  A     +L L         K+       F+++ + + + D+  VY SE +  +     K F +   DL     G  ++LL++++Y +S+ G H  +G  +TS+ ++ NT
Sbjct:   13 VELAIKCKEIMNKDMM---SKSDPICLVKQKTGVNK-FEELGRTEQLKDNLSPEFMKKIVIPYNFE-ERQE-LRFELWDVDKPDKKVEDQKLLGYVDVSLGKIVNARGIEAKIEKG-----KGSMIIVAKEASSAQSSEGKLHLKFGATKLDNKDTFGKSDPFFIIHKSISATDFMKVYESEWIKNDLNPTWKPFSISLSDLCD---GEFNRLLKIDVYDYSSNGKHDLIGSFETSVGQMVNT 241          
BLAST of Ggra6191.t1 vs. uniprot
Match: A0A0K2V5H8 (Copine VIII [Mus musculus] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V5H8_LEPSM)

HSP 1 Score: 58.5 bits (140), Expect = 7.430e-6
Identity = 53/241 (21.99%), Postives = 116/241 (48.13%), Query Frame = 0
Query:   54 LEVSVECRQLNAPSRLFPFRQVRPFAVFLYSDGPNAPWELIGRTETVLYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQCALEDIIAEPLLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLDMASGTKKNHRVF------YVLSRQLQSGDYTPVYRSEVLTRE-QKRFQVMTRDLTAVTAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKN 287
            +E+SV+C+ +     +    +  P  +     G +  +E +GRTE +     P F+ K+ V    E +RQ+ LR E++D  N  + +E Q  +G    +L  I+    +  +++       K   +I+  +A  +S++ +   L+L   +   +N   F      + +S+ + + D+  VY SE +  +    ++  +  L  +  G  ++LL+++++ +S+ G H  +G  +TS+ ++ N
Sbjct:   13 VELSVKCKDITNKDMM---SKSDPICLVKQKTGVDK-FEELGRTEQIKDCLSPEFMKKIVVPYNFE-ERQE-LRFELWDVDNIKKKVEDQKLLGYVDVSLGKIVNARGIEAKIEKG-----KGSMIIVAKEA--SSEQSSIGKLHLQFGASKLENKDTFGKSDPFFHISKSISATDFMKVYESEWIKNDLNPTWKPFSMSLNDLCDGELNRLLKIDVFDYSSNGKHDFIGEFETSVSQMMN 240          
The following BLAST results are available for this feature:
BLAST of Ggra6191.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IZC56.290e-20081.38Copine-3 n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
A0A7S0ZGD52.590e-2630.77Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2V3IHX92.590e-2226.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7T8KKF09.140e-722.22Copine VIII n=1 Tax=Caligus rogercresseyi TaxID=21... [more]
A0A0K2V5H87.430e-621.99Copine VIII [Mus musculus] n=2 Tax=Lepeophtheirus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 58..158
e-value: 0.0019
score: 18.5
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 54..183
e-value: 1.6E-5
score: 26.8
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 49..164
IPR045052CopinePANTHERPTHR10857COPINEcoord: 53..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:931692..932693 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6191.t1Ggra6191.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 931692..932693 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6191.t1 ID=Ggra6191.t1|Name=Ggra6191.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MGLDAQFSHDSLLDEQQLSSIRLQYPKSSRLLLGTTANLQQPAFLKALET
RYPLEVSVECRQLNAPSRLFPFRQVRPFAVFLYSDGPNAPWELIGRTETV
LYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQ
CALEDIIAEPLLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLD
MASGTKKNHRVFYVLSRQLQSGDYTPVYRSEVLTREQKRFQVMTRDLTAV
TAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNTERHHRMLWWPSA
LGDGDNVIEVGRIVLVESVVSSMLLQFRLRVTQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf
IPR045052Copine