Ggra6088.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6088.t1
Unique NameGgra6088.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:517499..518297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703046.1
PFAMsPolyketide_cyc
Max annot lvl2759|Eukaryota
Evalue2.12e-35
EggNOG OGsCOG5637@1|root,2QSDH@2759|Eukaryota
DescriptionPolyketide cyclase / dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6088Ggra6088Gracilaria gracilis GNS1m malegenetig00000045_pilon 517499..518297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6088.t1Ggra6088.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 517499..518297 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6088.t1.stop1Ggra6088.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 517499..517501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6088.t1.CDS1Ggra6088.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 517499..517785 -
Ggra6088.t1.CDS2Ggra6088.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 517878..517975 -
Ggra6088.t1.CDS3Ggra6088.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000045_pilon 518077..518297 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6088.t1.exon1Ggra6088.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 517499..517785 -
Ggra6088.t1.exon2Ggra6088.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 517878..517975 -
Ggra6088.t1.exon3Ggra6088.t1.exon3Gracilaria gracilis GNS1m maleexontig00000045_pilon 518077..518297 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6088.t1.intron1Ggra6088.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 517786..517877 -
Ggra6088.t1.intron2Ggra6088.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000045_pilon 517976..518076 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6088.t1.start1Ggra6088.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 518295..518297 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6088.t1 ID=Ggra6088.t1|Name=Ggra6088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MSYTFVPAVAFPNLRSQSSLPLKARRTIRTTAAKPPARITPTCVWVERSA
TVLVEMAPTEAYDYYIDLEAMPKWSPWLKSVEVDKNDGDVSRWTLASQGI
TISWQARNTLVRPGEIIAWKSETGLSNRGRVLFRGVENTNCKLTLAVEFD
LPGAVARIFDNDFVGRFVEDTLLADLKRFRAVALLNRRKRLRSTEVSTSN
G*
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spliced messenger RNA

>Ggra6088.t1 ID=Ggra6088.t1|Name=Ggra6088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000045_pilon:517499..518297- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTACACATTCGTACCGGCAGTTGCGTTTCCCAACCTCAGAAGTCA
AAGCTCGCTTCCACTCAAGGCTAGGAGGACAATAAGGACAACAGCGGCGA
AACCCCCAGCGAGGATTACTCCAACATGCGTGTGGGTTGAGCGATCAGCT
ACGGTTCTGGTCGAAATGGCCCCTACAGAAGCATATGACTACTACATCGA
CCTTGAAGCTATGCCCAAATGGTCTCCGTGGCTGAAGAGTGTTGAGGTCG
ATAAGAATGACGGCGATGTGTCCAGATGGACTTTGGCCTCTCAAGGAATT
ACAATCTCATGGCAGGCTCGGAATACCTTGGTAAGGCCCGGAGAGATTAT
TGCATGGAAGAGCGAGACCGGACTATCAAATCGAGGCCGAGTTTTGTTTC
GTGGTGTTGAGAATACTAATTGCAAACTCACTCTGGCGGTGGAATTTGAT
CTTCCTGGTGCCGTTGCGAGGATCTTTGATAACGATTTTGTCGGGAGATT
CGTAGAGGACACGCTCCTCGCCGACTTGAAGCGCTTCCGGGCAGTGGCGT
TGTTGAACAGAAGGAAGAGACTTCGTTCGACCGAGGTCTCGACTTCAAAC
GGCTAA
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protein sequence of Ggra6088.t1

>Ggra6088.t1 ID=Ggra6088.t1|Name=Ggra6088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MSYTFVPAVAFPNLRSQSSLPLKARRTIRTTAAKPPARITPTCVWVERSA
TVLVEMAPTEAYDYYIDLEAMPKWSPWLKSVEVDKNDGDVSRWTLASQGI
TISWQARNTLVRPGEIIAWKSETGLSNRGRVLFRGVENTNCKLTLAVEFD
LPGAVARIFDNDFVGRFVEDTLLADLKRFRAVALLNRRKRLRSTEVSTSN
G*
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mRNA from alignment at tig00000045_pilon:517499..518297-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6088.t1 ID=Ggra6088.t1|Name=Ggra6088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=799bp|location=Sequence derived from alignment at tig00000045_pilon:517499..518297- (Gracilaria gracilis GNS1m male)
ATGTCTTACACATTCGTACCGGCAGTTGCGTTTCCCAACCTCAGAAGTCA
AAGCTCGCTTCCACTCAAGGCTAGGAGGACAATAAGGACAACAGCGGCGA
AACCCCCAGCGAGGATTACTCCAACATGCGTGTGGGTTGAGCGATCAGCT
ACGGTTCTGGTCGAAATGGCCCCTACAGAAGCATATGACTACTACATCGA
CCTTGAAGCTATGCCCAAATGGTAAGCTGATTATGTATGAATCATTTGCG
TTCCTCACATGAACTGCCCATTCTGCTTTGTCTAACTTCATCCTGTGGTC
AATTTCCCGTCATTCTTGAAAGGTCTCCGTGGCTGAAGAGTGTTGAGGTC
GATAAGAATGACGGCGATGTGTCCAGATGGACTTTGGCCTCTCAAGGAAT
TACAATCTCATGGCAGGCTCGTAAGTATTCAAGAGTTCTTAGTACCCACG
ACAGTTCTGTCGATACCAGTCATACTCACATCCGTGGTGTCTATGTATTT
CATCTGTACCAGGGAATACCTTGGTAAGGCCCGGAGAGATTATTGCATGG
AAGAGCGAGACCGGACTATCAAATCGAGGCCGAGTTTTGTTTCGTGGTGT
TGAGAATACTAATTGCAAACTCACTCTGGCGGTGGAATTTGATCTTCCTG
GTGCCGTTGCGAGGATCTTTGATAACGATTTTGTCGGGAGATTCGTAGAG
GACACGCTCCTCGCCGACTTGAAGCGCTTCCGGGCAGTGGCGTTGTTGAA
CAGAAGGAAGAGACTTCGTTCGACCGAGGTCTCGACTTCAAACGGCTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:517499..518297-

>Ggra6088.t1 ID=Ggra6088.t1|Name=Ggra6088.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000045_pilon:517499..518297- (Gracilaria gracilis GNS1m male)
ATGTCTTACACATTCGTACCGGCAGTTGCGTTTCCCAACCTCAGAAGTCA
AAGCTCGCTTCCACTCAAGGCTAGGAGGACAATAAGGACAACAGCGGCGA
AACCCCCAGCGAGGATTACTCCAACATGCGTGTGGGTTGAGCGATCAGCT
ACGGTTCTGGTCGAAATGGCCCCTACAGAAGCATATGACTACTACATCGA
CCTTGAAGCTATGCCCAAATGGTCTCCGTGGCTGAAGAGTGTTGAGGTCG
ATAAGAATGACGGCGATGTGTCCAGATGGACTTTGGCCTCTCAAGGAATT
ACAATCTCATGGCAGGCTCGGAATACCTTGGTAAGGCCCGGAGAGATTAT
TGCATGGAAGAGCGAGACCGGACTATCAAATCGAGGCCGAGTTTTGTTTC
GTGGTGTTGAGAATACTAATTGCAAACTCACTCTGGCGGTGGAATTTGAT
CTTCCTGGTGCCGTTGCGAGGATCTTTGATAACGATTTTGTCGGGAGATT
CGTAGAGGACACGCTCCTCGCCGACTTGAAGCGCTTCCGGGCAGTGGCGT
TGTTGAACAGAAGGAAGAGACTTCGTTCGACCGAGGTCTCGACTTCAAAC
GGCTAA
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