Ggra6195.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6195.t1
Unique NameGgra6195.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:991262..993124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6195Ggra6195Gracilaria gracilis GNS1m malegenetig00000045_pilon 991262..993124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6195.t1Ggra6195.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 991262..993124 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6195.t1.start1Ggra6195.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 991262..991264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6195.t1.CDS1Ggra6195.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 991262..991730 +
Ggra6195.t1.CDS2Ggra6195.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 992793..993124 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6195.t1.exon1Ggra6195.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 991262..991730 +
Ggra6195.t1.exon2Ggra6195.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 992793..993124 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6195.t1.intron1Ggra6195.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 991731..992792 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6195.t1.stop1Ggra6195.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 993122..993124 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6195.t1 ID=Ggra6195.t1|Name=Ggra6195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MISLPDGSDFTICARDDEPEGPPSLDPIFTVERKDKDEWQDPGSLESFRS
GIGRALPVKKLRKVWSKDSPQSSDGFTTETALSIGRVAFNLSTSFDVFHS
NFVRGNPDNVSVPFCDTVRPMVYTHQEAVSLEILPEVTEGNRRKRKRLTS
LIELDSFTDILQLSLGWGEQQLFEKQHFFEYVMLRIDIYAISNRHRAYEE
GDQGFGSRNIAGVSWKSAEKRVKIAKQNWEEQVRTIVGVDNFHTRLRARN
WGPEYLLLYFAFPVIV*
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spliced messenger RNA

>Ggra6195.t1 ID=Ggra6195.t1|Name=Ggra6195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000045_pilon:991262..993124+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCTTTACCTGACGGAAGTGATTTTACTATATGTGCACGTGATGA
CGAGCCTGAGGGACCTCCAAGCCTTGATCCGATTTTCACAGTTGAACGAA
AAGATAAAGATGAGTGGCAAGATCCAGGCTCATTGGAAAGCTTCAGGAGC
GGGATAGGACGTGCGTTGCCCGTGAAGAAGTTAAGGAAGGTATGGTCAAA
AGATTCTCCGCAGAGTTCCGATGGCTTTACGACAGAGACGGCTCTAAGTA
TTGGTCGAGTGGCTTTTAATCTTAGTACATCGTTCGATGTGTTTCATAGC
AATTTTGTTCGCGGTAACCCAGACAATGTATCGGTACCATTTTGCGATAC
AGTTCGGCCAATGGTGTACACGCACCAAGAAGCAGTGAGTCTTGAGATTT
TGCCGGAGGTGACAGAAGGAAACAGACGTAAACGTAAGCGCCTTACATCT
CTAATCGAGCTCGATTCCTTCACTGACATTCTTCAGCTCTCGCTCGGTTG
GGGAGAACAGCAGCTATTTGAGAAGCAGCACTTTTTTGAATATGTCATGC
TACGGATTGACATATATGCCATCTCAAACCGCCATCGTGCGTATGAAGAA
GGAGACCAAGGCTTCGGGTCTCGAAACATCGCGGGAGTATCATGGAAGAG
CGCGGAAAAGCGTGTCAAAATTGCGAAGCAGAACTGGGAGGAGCAAGTGC
GCACTATCGTGGGGGTCGACAACTTTCATACTCGCTTGCGTGCTCGTAAC
TGGGGTCCTGAGTACTTGCTTTTATACTTTGCGTTCCCGGTGATTGTGTA
A
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protein sequence of Ggra6195.t1

>Ggra6195.t1 ID=Ggra6195.t1|Name=Ggra6195.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MISLPDGSDFTICARDDEPEGPPSLDPIFTVERKDKDEWQDPGSLESFRS
GIGRALPVKKLRKVWSKDSPQSSDGFTTETALSIGRVAFNLSTSFDVFHS
NFVRGNPDNVSVPFCDTVRPMVYTHQEAVSLEILPEVTEGNRRKRKRLTS
LIELDSFTDILQLSLGWGEQQLFEKQHFFEYVMLRIDIYAISNRHRAYEE
GDQGFGSRNIAGVSWKSAEKRVKIAKQNWEEQVRTIVGVDNFHTRLRARN
WGPEYLLLYFAFPVIV*
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mRNA from alignment at tig00000045_pilon:991262..993124+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6195.t1 ID=Ggra6195.t1|Name=Ggra6195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00000045_pilon:991262..993124+ (Gracilaria gracilis GNS1m male)
ATGATCTCTTTACCTGACGGAAGTGATTTTACTATATGTGCACGTGATGA
CGAGCCTGAGGGACCTCCAAGCCTTGATCCGATTTTCACAGTTGAACGAA
AAGATAAAGATGAGTGGCAAGATCCAGGCTCATTGGAAAGCTTCAGGAGC
GGGATAGGACGTGCGTTGCCCGTGAAGAAGTTAAGGAAGGTATGGTCAAA
AGATTCTCCGCAGAGTTCCGATGGCTTTACGACAGAGACGGCTCTAAGTA
TTGGTCGAGTGGCTTTTAATCTTAGTACATCGTTCGATGTGTTTCATAGC
AATTTTGTTCGCGGTAACCCAGACAATGTATCGGTACCATTTTGCGATAC
AGTTCGGCCAATGGTGTACACGCACCAAGAAGCAGTGAGTCTTGAGATTT
TGCCGGAGGTGACAGAAGGAAACAGACGTAAACGTAAGCGCCTTACATCT
CTAATCGAGCTCGATTCCTGTAACtgtagagcaaaccccaaagagagtat
gtatccaccaggatgtccgagttgtgttcccacaaaagggcgaactcaga
agtagagccctctgcccgtgcacgtgctgcgtaggagccgggtgtaaaca
gtagccggtcctggaataatctgcagaggtaaagaagagcgtgagactag
agaggagtaaccgacgatgggtcacgagagaacgagtccagaagtggagc
gaacggtgccgtaagacggtgtaatgctcctacggagaaccacacgagcg
acgctacggcccgtgcgaacggcaggaacagggccgatagtagaacgaga
cacacacacacgagtgtccaaatataaatctgtacagaggcggaagcgag
acttgcaccaggaaaacgatgaactaaacaacgatccggtacctcggcga
acgacaacaaatacaacctgatactggggtaattagcggaataagccaga
aactggtagtaaagaactttcttagggaccttgaggggtgatcgtaccga
gactagtcgtggttactctccttagaggagtcgtgaacctacgtaggcag
taacaaccatggcccggccttcggggtgaagaccacgtacttcaggaaca
agatacgactcaggtgagttttacttagtggctccagggcgagatcgccc
gagcatatatactttctactgtatctagggctgcgcactcccacgagcgc
tctacacgtgaacaacctagtgtcagggtgccacagtatctacccagcga
gtgtgacgccaaatatttgcacaaataagccacaaggccctactgtacac
ctatttcatatgttctattcctgattcacctaacaaggtacgtcccaaca
atatttccaatttcacccgaaacggggtccatattcatagtctgacacgt
cagagctcaatgggtagagctctattatgagaaacttcattgtaccgaca
tccgattgccattgctccacaGTAACAAGGACATTCAACACCCCATCGTG
CACGGTCTCGTTGACATAACTCACTTTTCAGTCACTGACATTCTTCAGCT
CTCGCTCGGTTGGGGAGAACAGCAGCTATTTGAGAAGCAGCACTTTTTTG
AATATGTCATGCTACGGATTGACATATATGCCATCTCAAACCGCCATCGT
GCGTATGAAGAAGGAGACCAAGGCTTCGGGTCTCGAAACATCGCGGGAGT
ATCATGGAAGAGCGCGGAAAAGCGTGTCAAAATTGCGAAGCAGAACTGGG
AGGAGCAAGTGCGCACTATCGTGGGGGTCGACAACTTTCATACTCGCTTG
CGTGCTCGTAACTGGGGTCCTGAGTACTTGCTTTTATACTTTGCGTTCCC
GGTGATTGTGTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:991262..993124+

>Ggra6195.t1 ID=Ggra6195.t1|Name=Ggra6195.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000045_pilon:991262..993124+ (Gracilaria gracilis GNS1m male)
ATGATCTCTTTACCTGACGGAAGTGATTTTACTATATGTGCACGTGATGA
CGAGCCTGAGGGACCTCCAAGCCTTGATCCGATTTTCACAGTTGAACGAA
AAGATAAAGATGAGTGGCAAGATCCAGGCTCATTGGAAAGCTTCAGGAGC
GGGATAGGACGTGCGTTGCCCGTGAAGAAGTTAAGGAAGGTATGGTCAAA
AGATTCTCCGCAGAGTTCCGATGGCTTTACGACAGAGACGGCTCTAAGTA
TTGGTCGAGTGGCTTTTAATCTTAGTACATCGTTCGATGTGTTTCATAGC
AATTTTGTTCGCGGTAACCCAGACAATGTATCGGTACCATTTTGCGATAC
AGTTCGGCCAATGGTGTACACGCACCAAGAAGCAGTGAGTCTTGAGATTT
TGCCGGAGGTGACAGAAGGAAACAGACGTAAACGTAAGCGCCTTACATCT
CTAATCGAGCTCGATTCCTTCACTGACATTCTTCAGCTCTCGCTCGGTTG
GGGAGAACAGCAGCTATTTGAGAAGCAGCACTTTTTTGAATATGTCATGC
TACGGATTGACATATATGCCATCTCAAACCGCCATCGTGCGTATGAAGAA
GGAGACCAAGGCTTCGGGTCTCGAAACATCGCGGGAGTATCATGGAAGAG
CGCGGAAAAGCGTGTCAAAATTGCGAAGCAGAACTGGGAGGAGCAAGTGC
GCACTATCGTGGGGGTCGACAACTTTCATACTCGCTTGCGTGCTCGTAAC
TGGGGTCCTGAGTACTTGCTTTTATACTTTGCGTTCCCGGTGATTGTGTA
A
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